Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 110.53588 * 2 1 4 4 N 1.47315 * 110.59950 * 237.00515 * 2 1 3 5 5 C 1.34528 * 106.61536 * 241.25118 * 4 2 1 6 6 O 1.21541 * 123.76825 * 180.20597 * 5 4 2 7 7 N 1.33785 * 112.46039 * 0.37818 * 5 4 2 8 8 C 1.46501 * 124.17862 * 179.86300 * 7 5 4 9 9 C 1.52994 * 109.47373 * 269.70316 * 8 7 5 10 10 C 1.53001 * 109.47178 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.47334 * 179.97438 * 10 9 8 12 12 O 1.21295 * 119.99787 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00446 * 179.97438 * 11 10 9 14 14 C 1.37101 * 120.00551 * 179.97438 * 13 11 10 15 15 H 1.07995 * 119.99228 * 16.26459 * 14 13 11 16 16 C 1.38950 * 120.00373 * 196.25700 * 14 13 11 17 17 N 1.31410 * 119.99826 * 21.14199 * 16 14 13 18 18 Si 1.86794 * 119.99975 * 201.14050 * 16 14 13 19 19 H 1.48501 * 109.47243 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47244 * 120.00223 * 18 16 14 21 21 H 1.48500 * 109.47243 * 240.00232 * 18 16 14 22 22 C 1.46505 * 120.00038 * 0.02562 * 13 11 10 23 23 C 1.50706 * 109.46825 * 84.13922 * 22 13 11 24 24 O 1.20821 * 120.00260 * 0.02562 * 23 22 13 25 25 O 1.34235 * 119.99705 * 180.02562 * 23 22 13 26 26 C 1.34769 * 111.64461 * 359.59898 * 7 5 4 27 27 O 1.21240 * 127.15658 * 180.18971 * 26 7 5 28 28 H 1.09000 * 109.46993 * 297.16801 * 1 2 3 29 29 H 1.08993 * 109.47119 * 57.16921 * 1 2 3 30 30 H 1.09004 * 109.46849 * 177.17356 * 1 2 3 31 31 H 1.08999 * 109.47370 * 182.83552 * 3 2 1 32 32 H 1.08998 * 109.46930 * 302.83181 * 3 2 1 33 33 H 1.08999 * 109.46840 * 62.82813 * 3 2 1 34 34 H 0.96998 * 126.68935 * 61.43491 * 4 2 1 35 35 H 1.09005 * 109.47196 * 149.70084 * 8 7 5 36 36 H 1.08998 * 109.47052 * 29.70492 * 8 7 5 37 37 H 1.08995 * 109.47195 * 59.99678 * 9 8 7 38 38 H 1.09003 * 109.46952 * 299.99667 * 9 8 7 39 39 H 1.08998 * 109.47215 * 300.00156 * 10 9 8 40 40 H 1.09005 * 109.47229 * 59.99867 * 10 9 8 41 41 H 0.96996 * 119.99920 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.47281 * 204.14191 * 22 13 11 43 43 H 1.09001 * 109.46768 * 324.14740 * 22 13 11 44 44 H 0.96702 * 116.99725 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0483 -0.7509 -1.1566 5 6 2.7640 -1.7762 -0.6601 6 8 3.3370 -2.5966 -1.3499 7 7 2.7716 -1.7938 0.6776 8 6 3.4688 -2.7992 1.4834 9 6 2.5254 -3.9700 1.7661 10 6 3.2538 -5.0203 2.6072 11 6 2.3244 -6.1733 2.8861 12 8 1.1911 -6.1569 2.4542 13 7 2.7527 -7.2232 3.6145 14 6 1.9071 -8.2719 3.8688 15 1 1.0061 -8.3925 3.2857 16 6 2.2093 -9.1797 4.8764 17 7 3.0360 -8.8406 5.8399 18 14 1.4404 -10.8820 4.8614 19 1 0.5527 -11.0138 3.6782 20 1 2.5114 -11.9084 4.7928 21 1 0.6461 -11.0774 6.1008 22 6 4.1218 -7.2433 4.1358 23 6 4.1760 -6.4810 5.4347 24 8 3.1739 -5.9735 5.8796 25 8 5.3377 -6.3660 6.0973 26 6 2.0634 -0.7692 1.1923 27 8 1.8886 -0.5159 2.3649 28 1 -0.3633 0.4692 0.9143 29 1 -0.3633 0.5571 -0.8635 30 1 -0.3633 -1.0265 -0.0507 31 1 3.1554 1.4130 -0.0508 32 1 1.6724 1.9685 -0.8635 33 1 1.7547 1.9376 0.9143 34 1 1.9041 -0.5447 -2.0933 35 1 3.7865 -2.3529 2.4258 36 1 4.3419 -3.1592 0.9394 37 1 2.2077 -4.4163 0.8238 38 1 1.6523 -3.6100 2.3103 39 1 4.1267 -5.3803 2.0627 40 1 3.5719 -4.5743 3.5496 41 1 3.2467 -9.4742 6.5435 42 1 4.4304 -8.2746 4.3065 43 1 4.7924 -6.7781 3.4133 44 1 5.3228 -5.8681 6.9262 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736738340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -160.642618 kcal Electronic energy + Delta-G solvation = -30633.893777 eV Core-core repulsion = 26166.873432 eV Total energy + Delta-G solvation = -4467.020345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.68846 -39.47531 -38.74346 -38.22835 -36.90735 -35.93119 -35.24487 -34.52303 -33.02325 -31.78031 -31.42434 -27.96734 -27.95796 -27.45100 -24.96801 -24.21958 -22.67536 -21.47971 -21.07524 -20.42861 -18.83568 -18.11099 -17.18635 -16.93440 -16.83355 -16.55241 -16.16016 -15.90337 -15.75165 -15.54614 -14.90446 -14.75287 -14.49186 -14.44609 -14.31267 -14.01146 -13.80241 -13.21725 -13.04567 -12.76891 -12.69168 -12.65818 -12.34371 -12.12612 -11.99797 -11.73791 -11.62073 -11.44078 -11.33322 -10.97402 -10.83001 -10.56762 -10.42066 -10.33465 -10.29826 -10.21885 -9.88605 -9.70670 -9.64504 -9.04960 -8.52137 -7.91467 -6.45035 -3.88742 1.46381 2.05163 2.85381 2.89096 3.12974 3.24906 3.32531 3.43987 3.63878 3.65853 4.07226 4.15355 4.24672 4.35192 4.67614 4.82521 5.01999 5.04189 5.09388 5.13088 5.19139 5.21347 5.25124 5.39188 5.43899 5.52468 5.66692 5.68160 5.71518 5.84539 5.89346 6.09373 6.37017 6.47743 6.54318 6.57851 6.59377 6.91566 7.22972 7.48232 7.55131 7.97018 7.99044 8.37086 9.01996 9.09425 9.31078 9.84568 10.64064 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.002711 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.985731 B =10324.460052 C =10877.474903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.116 3.884 3 C -0.146 4.146 4 N -0.724 5.724 5 C 0.703 3.297 6 O -0.539 6.539 7 N -0.573 5.573 8 C 0.116 3.884 9 C -0.113 4.113 10 C -0.131 4.131 11 C 0.463 3.537 12 O -0.575 6.575 13 N -0.434 5.434 14 C -0.303 4.303 15 H 0.108 0.892 16 C 0.028 3.972 17 N -0.883 5.883 18 Si 0.928 3.072 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.283 1.283 22 C 0.145 3.855 23 C 0.488 3.512 24 O -0.504 6.504 25 O -0.535 6.535 26 C 0.527 3.473 27 O -0.459 6.459 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.437 0.563 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.270 0.730 42 H 0.129 0.871 43 H 0.078 0.922 44 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 17.678 -10.030 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.026 3.974 3 C -0.204 4.204 4 N -0.389 5.389 5 C 0.404 3.596 6 O -0.412 6.412 7 N -0.318 5.318 8 C -0.005 4.005 9 C -0.151 4.151 10 C -0.172 4.172 11 C 0.252 3.748 12 O -0.458 6.458 13 N -0.154 5.154 14 C -0.430 4.430 15 H 0.126 0.874 16 C -0.174 4.174 17 N -0.524 5.524 18 Si 0.755 3.245 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.209 1.209 22 C 0.019 3.981 23 C 0.329 3.671 24 O -0.389 6.389 25 O -0.346 6.346 26 C 0.313 3.687 27 O -0.328 6.328 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.282 0.718 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.147 0.853 43 H 0.096 0.904 44 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.532 17.111 -9.972 20.117 hybrid contribution -0.311 -0.515 0.631 0.872 sum 3.222 16.595 -9.341 19.314 Atomic orbital electron populations 1.22017 0.90090 1.04204 1.04343 1.21484 0.97344 0.94146 0.84438 1.21994 1.02006 0.91971 1.04404 1.45680 1.54986 1.29257 1.08962 1.15884 0.79813 0.82139 0.81807 1.91028 1.48173 1.41086 1.60915 1.46434 1.49347 1.28254 1.07811 1.21879 0.95610 0.87820 0.95151 1.21573 0.98301 0.93802 1.01465 1.21487 0.99224 0.95792 1.00711 1.19957 0.88139 0.82848 0.83864 1.90527 1.20326 1.79249 1.55746 1.43466 1.09723 1.17300 1.44888 1.19765 1.06376 1.00182 1.16718 0.87445 1.25223 0.97794 1.00635 0.93774 1.69798 1.37062 1.35025 1.10485 0.85826 0.78807 0.81450 0.78400 1.19170 1.20554 1.20918 1.20700 0.85851 1.02782 0.88812 1.23878 0.79768 0.76493 0.87001 1.90622 1.35335 1.45413 1.67504 1.84528 1.38674 1.72254 1.39120 1.20793 0.77414 0.80530 0.89929 1.90820 1.56215 1.69159 1.16566 0.89692 0.90286 0.91027 0.91403 0.90286 0.89716 0.71830 0.88712 0.88400 0.90510 0.90796 0.89905 0.90156 0.91967 0.85294 0.90404 0.75180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.98 37.16 0.33 -0.66 16 2 C 0.12 0.93 1.37 -132.09 -0.18 0.75 16 3 C -0.15 -0.79 8.99 37.16 0.33 -0.46 16 4 N -0.72 -6.08 5.91 -52.93 -0.31 -6.39 16 5 C 0.70 8.94 8.62 -88.02 -0.76 8.18 16 6 O -0.54 -8.67 17.48 5.33 0.09 -8.57 16 7 N -0.57 -7.41 2.60 -120.73 -0.31 -7.73 16 8 C 0.12 1.56 5.70 -4.04 -0.02 1.53 16 9 C -0.11 -1.92 4.83 -26.73 -0.13 -2.05 16 10 C -0.13 -2.39 4.31 -27.88 -0.12 -2.51 16 11 C 0.46 11.33 7.42 -10.99 -0.08 11.25 16 12 O -0.58 -16.08 15.62 5.54 0.09 -15.99 16 13 N -0.43 -10.97 2.18 -116.09 -0.25 -11.22 16 14 C -0.30 -8.40 9.35 -14.93 -0.14 -8.54 16 15 H 0.11 3.14 7.36 -52.49 -0.39 2.75 16 16 C 0.03 0.73 4.89 -17.47 -0.09 0.64 16 17 N -0.88 -23.23 9.25 55.50 0.51 -22.72 16 18 Si 0.93 20.67 29.60 -169.99 -5.03 15.63 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.15 3.12 4.97 -5.19 -0.03 3.10 16 23 C 0.49 10.73 5.87 36.01 0.21 10.94 16 24 O -0.50 -13.11 16.81 -18.75 -0.32 -13.42 16 25 O -0.53 -9.46 13.42 -39.27 -0.53 -9.99 16 26 C 0.53 6.41 6.98 -10.56 -0.07 6.34 16 27 O -0.46 -6.81 17.76 5.59 0.10 -6.71 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.44 2.48 8.96 -40.82 -0.37 2.11 16 35 H 0.09 1.18 8.00 -51.93 -0.42 0.76 16 36 H 0.10 1.20 7.85 -51.93 -0.41 0.79 16 37 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 38 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 39 H 0.08 1.26 7.41 -51.93 -0.39 0.87 16 40 H 0.08 1.43 7.52 -51.93 -0.39 1.04 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.13 2.89 6.34 -51.93 -0.33 2.56 16 43 H 0.08 1.33 6.68 -51.93 -0.35 0.98 16 44 H 0.39 5.33 9.10 45.56 0.41 5.75 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -37.83 376.84 -6.15 -43.98 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -5.13 Total: 8.94 kcal Atomic # 6 Polarization: 29.25 SS G_CDS: -0.74 Total: 28.51 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.37 Total: -48.06 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.56 Total: -54.69 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.83 -6.15 -43.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736738340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.662 kcal (2) G-P(sol) polarization free energy of solvation -37.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds