Wall clock time and date at job start Sat Apr 11 2020 06:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 116.99579 * 2 1 4 4 C 1.38562 * 120.07774 * 359.97438 * 3 2 1 5 5 C 1.38247 * 120.00056 * 180.02562 * 4 3 2 6 6 C 1.38258 * 120.14511 * 359.74706 * 5 4 3 7 7 C 1.38244 * 120.14408 * 0.51190 * 6 5 4 8 8 C 1.50698 * 119.99380 * 179.76811 * 7 6 5 9 9 N 1.46502 * 109.47027 * 259.71476 * 8 7 6 10 10 C 1.34777 * 120.00158 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99631 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00058 * 180.02562 * 10 9 8 13 13 C 1.50698 * 109.46927 * 180.02562 * 12 10 9 14 14 C 1.37637 * 120.13328 * 264.99985 * 13 12 10 15 15 C 1.38610 * 120.25115 * 179.97438 * 14 13 12 16 16 C 1.38662 * 120.50078 * 0.02899 * 15 14 13 17 17 C 1.37595 * 120.24945 * 0.02562 * 16 15 14 18 18 C 1.40704 * 120.12208 * 84.73196 * 13 12 10 19 19 C 1.41393 * 120.24665 * 359.97438 * 18 13 12 20 20 H 1.07996 * 119.99758 * 333.90135 * 19 18 13 21 21 C 1.39952 * 119.99920 * 153.89974 * 19 18 13 22 22 N 1.30817 * 119.99956 * 343.71193 * 21 19 18 23 23 Si 1.86797 * 119.99651 * 163.71287 * 21 19 18 24 24 H 1.48495 * 109.47102 * 90.00226 * 23 21 19 25 25 H 1.48505 * 109.46943 * 210.00003 * 23 21 19 26 26 H 1.48500 * 109.47194 * 330.00031 * 23 21 19 27 27 C 1.38564 * 119.99972 * 359.48692 * 7 6 5 28 28 O 1.35993 * 120.07025 * 180.23664 * 27 7 6 29 29 H 1.08997 * 109.46807 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46749 * 299.99408 * 1 2 3 31 31 H 1.08996 * 109.47357 * 59.99320 * 1 2 3 32 32 H 1.07995 * 119.99790 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.92488 * 180.02562 * 5 4 3 34 34 H 1.07994 * 119.92486 * 180.25131 * 6 5 4 35 35 H 1.09007 * 109.46886 * 139.71957 * 8 7 6 36 36 H 1.08996 * 109.47535 * 19.72531 * 8 7 6 37 37 H 0.97000 * 119.99875 * 0.02562 * 9 8 7 38 38 H 1.08997 * 109.46636 * 60.00523 * 12 10 9 39 39 H 1.08996 * 109.46994 * 300.00595 * 12 10 9 40 40 H 1.07999 * 119.87356 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.74901 * 179.97438 * 15 14 13 42 42 H 1.07998 * 119.87086 * 179.97438 * 16 15 14 43 43 H 1.07995 * 120.12964 * 179.97438 * 17 16 15 44 44 H 0.97000 * 120.00500 * 179.97438 * 22 21 19 45 45 H 0.96697 * 114.00839 * 89.99995 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0005 5 6 1.9224 3.6058 -0.0011 6 6 3.3029 3.6799 0.0042 7 6 4.0603 2.5234 -0.0006 8 6 5.5649 2.6081 -0.0001 9 7 6.0664 2.3952 -1.3601 10 6 7.3918 2.4273 -1.6023 11 8 8.1693 2.6321 -0.6943 12 6 7.9077 2.2088 -3.0013 13 6 9.4123 2.2934 -3.0007 14 6 10.0377 3.4801 -3.3090 15 6 11.4214 3.5608 -3.3087 16 6 12.1912 2.4498 -2.9993 17 6 11.5875 1.2528 -2.6892 18 6 10.1831 1.1609 -2.6797 19 6 9.5516 -0.0619 -2.3554 20 1 8.5530 -0.0614 -1.9442 21 6 10.2206 -1.2727 -2.5673 22 7 11.2734 -1.3113 -3.3428 23 14 9.6102 -2.8337 -1.7426 24 1 8.6266 -3.5085 -2.6270 25 1 10.7575 -3.7431 -1.4936 26 1 8.9614 -2.4904 -0.4517 27 6 3.4359 1.2864 -0.0001 28 8 4.1795 0.1478 0.0000 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 0.2146 2.3197 -0.0005 33 1 1.3341 4.5115 -0.0011 34 1 3.7907 4.6434 0.0079 35 1 5.9716 1.8430 0.6611 36 1 5.8733 3.5929 0.3509 37 1 5.4445 2.2317 -2.0863 38 1 7.5006 2.9740 -3.6622 39 1 7.5995 1.2240 -3.3524 40 1 9.4480 4.3519 -3.5511 41 1 11.9037 4.4959 -3.5522 42 1 13.2686 2.5240 -3.0026 43 1 12.1889 0.3886 -2.4490 44 1 11.7374 -2.1504 -3.4894 45 1 4.3949 -0.1814 0.8834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777419021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:24 Heat of formation + Delta-G solvation = -73.627411 kcal Electronic energy + Delta-G solvation = -28760.080420 eV Core-core repulsion = 24707.682600 eV Total energy + Delta-G solvation = -4052.397820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.76686 -39.15002 -38.19682 -37.18793 -36.68579 -34.33449 -33.53246 -31.76400 -30.83420 -29.98895 -29.36319 -27.73804 -27.10066 -25.54581 -24.65991 -22.71845 -21.55659 -20.84707 -20.42040 -19.29520 -18.66701 -17.78674 -17.08735 -16.85190 -16.29850 -16.21013 -15.71161 -15.46932 -15.23485 -14.83975 -14.49904 -14.37478 -14.29433 -13.67675 -13.47769 -13.39318 -12.86825 -12.68420 -12.52763 -12.43737 -12.32546 -12.14991 -11.65924 -11.50879 -11.47632 -11.39832 -11.05869 -10.90468 -10.87976 -10.68719 -10.60784 -10.31443 -9.39862 -9.33961 -9.28821 -9.06896 -8.84889 -8.59974 -8.40902 -7.22544 -7.20052 -6.65016 -4.24916 0.84099 1.06415 2.86845 2.89980 3.05545 3.13551 3.20103 3.26874 3.35242 3.45717 3.91143 4.02482 4.06582 4.42683 4.54164 4.73059 4.75105 4.78312 4.93821 5.01211 5.06272 5.13182 5.40793 5.59554 5.61211 5.82471 5.87726 5.94156 6.05964 6.13038 6.24035 6.25854 6.36301 6.37036 6.53677 6.59219 6.85576 6.89715 6.93723 7.18035 7.38382 7.51070 7.60161 7.73392 7.98527 8.06281 8.17773 8.21564 8.40775 8.74247 8.96976 9.01252 9.10675 10.29112 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.003057 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.162403 B = 9158.001566 C =11023.698009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.098 3.902 4 C -0.193 4.193 5 C -0.091 4.091 6 C -0.124 4.124 7 C -0.090 4.090 8 C 0.170 3.830 9 N -0.735 5.735 10 C 0.516 3.484 11 O -0.523 6.523 12 C -0.070 4.070 13 C -0.180 4.180 14 C -0.081 4.081 15 C -0.241 4.241 16 C -0.108 4.108 17 C -0.160 4.160 18 C 0.129 3.871 19 C -0.455 4.455 20 H 0.075 0.925 21 C 0.077 3.923 22 N -0.797 5.797 23 Si 0.902 3.098 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.261 1.261 27 C 0.095 3.905 28 O -0.476 6.476 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.397 0.603 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.279 0.721 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.747 4.429 6.124 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.052 3.948 4 C -0.212 4.212 5 C -0.110 4.110 6 C -0.143 4.143 7 C -0.091 4.091 8 C 0.046 3.954 9 N -0.390 5.390 10 C 0.304 3.696 11 O -0.397 6.397 12 C -0.110 4.110 13 C -0.182 4.182 14 C -0.100 4.100 15 C -0.260 4.260 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.126 3.874 19 C -0.484 4.484 20 H 0.093 0.907 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.727 3.273 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.185 1.185 27 C 0.048 3.952 28 O -0.286 6.286 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.089 0.911 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -20.919 4.251 6.091 22.199 hybrid contribution -0.876 -0.791 0.525 1.292 sum -21.796 3.460 6.616 23.039 Atomic orbital electron populations 1.23086 0.78546 1.04084 1.01214 1.86181 1.21119 1.26123 1.88564 1.19470 0.91716 0.84980 0.98598 1.21185 1.00067 0.91984 1.07986 1.20946 0.94479 0.97062 0.98474 1.20976 0.93528 0.97882 1.01865 1.20180 0.96219 0.91866 1.00859 1.19886 0.87113 1.02181 0.86195 1.46085 1.07802 1.75906 1.09174 1.21228 0.80729 0.75282 0.92340 1.90674 1.55665 1.46880 1.46481 1.20257 0.95664 1.03081 0.91997 1.19066 0.91412 0.95526 1.12150 1.20292 0.94145 0.95338 1.00197 1.20293 0.93596 0.97477 1.14671 1.20665 0.97142 0.93975 1.00827 1.21292 0.95112 0.96274 1.05244 1.17345 0.91523 0.91420 0.87075 1.19489 1.01825 0.90022 1.37109 0.90676 1.25873 0.94107 1.00957 0.93060 1.69822 1.16698 1.28368 1.27351 0.86409 0.79168 0.80839 0.80921 1.19535 1.20200 1.18502 1.17629 0.86062 0.86582 1.04913 1.84956 1.71497 1.38956 1.33163 0.88134 0.92732 0.92619 0.85127 0.85345 0.85069 0.90850 0.90902 0.76943 0.90693 0.88550 0.89809 0.89736 0.89655 0.86550 0.91055 0.75627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.31 10.28 -34.24 -0.35 -3.66 16 3 C 0.10 1.08 6.70 -39.12 -0.26 0.81 16 4 C -0.19 -1.67 9.04 -39.46 -0.36 -2.02 16 5 C -0.09 -0.75 10.04 -39.57 -0.40 -1.14 16 6 C -0.12 -1.17 9.66 -39.57 -0.38 -1.56 16 7 C -0.09 -1.04 5.26 -104.50 -0.55 -1.59 16 8 C 0.17 2.35 5.46 -5.19 -0.03 2.32 16 9 N -0.74 -11.53 5.55 -61.47 -0.34 -11.87 16 10 C 0.52 10.45 7.44 -10.99 -0.08 10.37 16 11 O -0.52 -12.82 16.03 5.56 0.09 -12.73 16 12 C -0.07 -1.44 5.18 -29.04 -0.15 -1.59 16 13 C -0.18 -4.47 4.43 -103.91 -0.46 -4.93 16 14 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 15 C -0.24 -5.78 10.05 -39.29 -0.39 -6.17 16 16 C -0.11 -2.70 10.02 -39.66 -0.40 -3.10 16 17 C -0.16 -4.39 8.69 -38.87 -0.34 -4.73 16 18 C 0.13 3.55 5.56 -106.82 -0.59 2.95 16 19 C -0.45 -12.36 8.14 -37.74 -0.31 -12.67 16 20 H 0.08 2.01 6.67 -52.49 -0.35 1.66 16 21 C 0.08 2.00 5.16 -17.34 -0.09 1.91 16 22 N -0.80 -21.11 10.96 55.55 0.61 -20.50 16 23 Si 0.90 19.55 29.59 -169.99 -5.03 14.52 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 27 C 0.09 1.15 6.69 -39.12 -0.26 0.88 16 28 O -0.48 -6.24 12.52 -34.22 -0.43 -6.67 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.26 7.66 -51.92 -0.40 -0.14 16 31 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 1.07 8.03 -52.49 -0.42 0.64 16 35 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 36 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 37 H 0.40 5.44 8.46 -40.82 -0.35 5.09 16 38 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 39 H 0.10 1.97 7.08 -51.93 -0.37 1.61 16 40 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.12 3.28 6.20 -52.49 -0.33 2.95 16 44 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 45 H 0.39 3.62 9.06 45.56 0.41 4.03 16 LS Contribution 382.96 15.07 5.77 5.77 Total: -1.00 -34.21 382.96 -9.14 -43.35 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.01 Total: 13.19 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -4.44 Total: -21.41 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.27 Total: -32.37 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.69 Total: -23.06 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.21 -9.14 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777419021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.278 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds