Wall clock time and date at job start Sat Apr 11 2020 06:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 116.99878 * 2 1 4 4 C 1.38566 * 120.07215 * 0.02562 * 3 2 1 5 5 C 1.38245 * 119.99775 * 179.70626 * 4 3 2 6 6 C 1.38259 * 120.14412 * 0.55406 * 5 4 3 7 7 C 1.50698 * 119.92288 * 179.72562 * 6 5 4 8 8 N 1.46502 * 109.47027 * 269.71581 * 7 6 5 9 9 C 1.34777 * 120.00158 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99631 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00058 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.46927 * 180.02562 * 11 9 8 13 13 C 1.37637 * 120.13328 * 264.99985 * 12 11 9 14 14 C 1.38610 * 120.25115 * 179.97438 * 13 12 11 15 15 C 1.38662 * 120.50078 * 0.02899 * 14 13 12 16 16 C 1.37595 * 120.24945 * 0.02562 * 15 14 13 17 17 C 1.40704 * 120.12208 * 84.73196 * 12 11 9 18 18 C 1.41393 * 120.24665 * 359.97438 * 17 12 11 19 19 H 1.07996 * 119.99758 * 333.90135 * 18 17 12 20 20 C 1.39952 * 119.99920 * 153.89974 * 18 17 12 21 21 N 1.30817 * 119.99956 * 343.71193 * 20 18 17 22 22 Si 1.86797 * 119.99651 * 163.71287 * 20 18 17 23 23 H 1.48495 * 109.47102 * 90.00226 * 22 20 18 24 24 H 1.48505 * 109.46943 * 210.00003 * 22 20 18 25 25 H 1.48500 * 109.47194 * 330.00031 * 22 20 18 26 26 C 1.38244 * 120.14592 * 359.44069 * 6 5 4 27 27 C 1.38571 * 119.99859 * 0.28593 * 26 6 5 28 28 O 1.35994 * 120.06632 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47075 * 300.00299 * 1 2 3 31 31 H 1.09004 * 109.46978 * 60.00223 * 1 2 3 32 32 H 1.08001 * 120.00086 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.92799 * 180.29002 * 5 4 3 34 34 H 1.09007 * 109.46886 * 149.72062 * 7 6 5 35 35 H 1.08996 * 109.47535 * 29.72637 * 7 6 5 36 36 H 0.97000 * 119.99875 * 0.02562 * 8 7 6 37 37 H 1.08997 * 109.46636 * 60.00523 * 11 9 8 38 38 H 1.08996 * 109.46994 * 300.00595 * 11 9 8 39 39 H 1.07999 * 119.87356 * 0.02562 * 13 12 11 40 40 H 1.07994 * 119.74901 * 179.97438 * 14 13 12 41 41 H 1.07998 * 119.87086 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.12964 * 179.97438 * 16 15 14 43 43 H 0.97000 * 120.00500 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.99998 * 180.25305 * 26 6 5 45 45 H 0.96701 * 113.99894 * 90.00760 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9223 3.6057 0.0067 6 6 3.3029 3.6799 0.0007 7 6 3.9836 5.0244 0.0012 8 7 4.2041 5.4606 -1.3799 9 6 4.8021 6.6431 -1.6258 10 8 5.1581 7.3459 -0.7037 11 6 5.0284 7.0920 -3.0464 12 6 5.7092 8.4365 -3.0460 13 6 4.9633 9.5886 -3.1488 14 6 5.5869 10.8265 -3.1480 15 6 6.9665 10.9196 -3.0446 16 6 7.7322 9.7810 -2.9419 17 6 7.1094 8.5189 -2.9348 18 6 7.8854 7.3423 -2.8224 19 1 7.4495 6.4455 -2.4076 20 6 9.2185 7.3400 -3.2486 21 7 9.6572 8.2935 -4.0293 22 14 10.3710 5.9751 -2.7027 23 1 10.3160 4.8597 -3.6815 24 1 11.7584 6.4994 -2.6273 25 1 9.9551 5.4813 -1.3654 26 6 4.0603 2.5233 0.0003 27 6 3.4359 1.2863 -0.0002 28 8 4.1796 0.1477 -0.0011 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2146 2.3196 0.0014 33 1 1.3342 4.5115 0.0118 34 1 4.9418 4.9463 0.5149 35 1 3.3538 5.7503 0.5154 36 1 3.9190 4.8986 -2.1173 37 1 4.0701 7.1698 -3.5598 38 1 5.6583 6.3663 -3.5608 39 1 3.8880 9.5280 -3.2294 40 1 4.9938 11.7254 -3.2295 41 1 7.4418 11.8893 -3.0455 42 1 8.8066 9.8557 -2.8619 43 1 10.5812 8.2922 -4.3245 44 1 5.1385 2.5840 -0.0002 45 1 4.3949 -0.1822 0.8820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777419960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:26 Heat of formation + Delta-G solvation = -75.883802 kcal Electronic energy + Delta-G solvation = -28255.382871 eV Core-core repulsion = 24202.887206 eV Total energy + Delta-G solvation = -4052.495664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75852 -39.22484 -38.19795 -37.40290 -36.90729 -34.16390 -33.57118 -31.76859 -30.79786 -30.23537 -29.39999 -28.06948 -26.94478 -25.39587 -24.61950 -22.93622 -21.61707 -20.88615 -20.48570 -19.33678 -18.78470 -17.86937 -17.13342 -16.88766 -16.48914 -16.16100 -15.76366 -15.35079 -15.06064 -14.90163 -14.60003 -14.40269 -14.29600 -14.09530 -13.53173 -13.46576 -12.97433 -12.71658 -12.64083 -12.51492 -12.30392 -12.02605 -11.67742 -11.56616 -11.52306 -11.38336 -11.10146 -10.95135 -10.92409 -10.83696 -10.65338 -10.35356 -9.43615 -9.33419 -9.26105 -9.12151 -9.09682 -8.68612 -8.37423 -7.26082 -7.23884 -6.68788 -4.29108 0.90620 0.95552 2.83016 2.85695 3.01138 3.10321 3.15689 3.21976 3.31463 3.38988 3.82119 3.98038 3.99562 4.44312 4.53700 4.64433 4.71298 4.74476 4.86359 5.03570 5.07138 5.23947 5.34866 5.49957 5.68656 5.77104 5.85632 5.88646 5.90795 6.08147 6.21075 6.29779 6.33357 6.36650 6.48796 6.55847 6.79316 6.85275 6.85675 7.13705 7.34723 7.46545 7.47433 7.69312 7.93440 8.00916 8.13041 8.18072 8.36755 8.69988 8.90511 8.96978 9.06823 10.25334 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.002618 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.978714 B =10692.049622 C =12385.383046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.105 3.895 4 C -0.197 4.197 5 C -0.069 4.069 6 C -0.120 4.120 7 C 0.165 3.835 8 N -0.742 5.742 9 C 0.515 3.485 10 O -0.521 6.521 11 C -0.070 4.070 12 C -0.181 4.181 13 C -0.081 4.081 14 C -0.240 4.240 15 C -0.107 4.107 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.455 4.455 19 H 0.074 0.926 20 C 0.077 3.923 21 N -0.796 5.796 22 Si 0.902 3.098 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.086 4.086 27 C 0.072 3.928 28 O -0.485 6.485 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.397 0.603 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.140 0.860 45 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 -15.312 7.092 22.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.059 3.941 4 C -0.216 4.216 5 C -0.087 4.087 6 C -0.121 4.121 7 C 0.042 3.958 8 N -0.397 5.397 9 C 0.302 3.698 10 O -0.394 6.394 11 C -0.110 4.110 12 C -0.183 4.183 13 C -0.100 4.100 14 C -0.260 4.260 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.126 3.874 18 C -0.485 4.485 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.422 5.422 22 Si 0.726 3.274 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.185 1.185 26 C -0.105 4.105 27 C 0.027 3.973 28 O -0.294 6.294 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.230 0.770 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.158 0.842 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -14.685 -14.839 7.038 22.031 hybrid contribution 0.189 -0.841 0.373 0.940 sum -14.495 -15.681 7.411 22.603 Atomic orbital electron populations 1.23100 0.78425 1.04066 1.01429 1.86153 1.21264 1.26288 1.88511 1.19512 0.91777 0.84915 0.97924 1.21154 1.00149 0.91766 1.08556 1.20953 0.93857 0.97294 0.96611 1.19780 0.93477 0.94786 1.04073 1.20025 0.99964 0.90758 0.85085 1.46230 1.64064 1.22105 1.07325 1.21269 0.75893 0.79742 0.92869 1.90683 1.48498 1.53789 1.46462 1.20262 1.00521 0.98250 0.91980 1.19064 0.94006 0.91244 1.13957 1.20292 0.96550 0.92802 1.00310 1.20302 0.94416 0.95574 1.15686 1.20671 0.93780 0.96971 1.01162 1.21294 0.99474 0.91512 1.05593 1.17344 0.90104 0.93010 0.86919 1.19458 0.95020 0.97767 1.36247 0.90793 1.25878 0.98810 0.96644 0.92726 1.69817 1.17139 1.31207 1.23987 0.86417 0.79339 0.81245 0.80381 1.19530 1.20124 1.18537 1.21286 1.00978 0.90213 0.98064 1.17712 0.86099 0.86647 1.06850 1.84916 1.71734 1.39535 1.33250 0.88148 0.92611 0.92493 0.84906 0.85090 0.90857 0.90958 0.76962 0.90638 0.88564 0.89800 0.89709 0.89624 0.86538 0.91009 0.84203 0.75909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.03 10.28 -34.23 -0.35 -3.38 16 3 C 0.10 1.08 6.70 -39.12 -0.26 0.82 16 4 C -0.20 -1.73 9.04 -39.46 -0.36 -2.09 16 5 C -0.07 -0.64 9.69 -39.57 -0.38 -1.02 16 6 C -0.12 -1.28 5.25 -104.61 -0.55 -1.83 16 7 C 0.17 2.13 5.80 -5.19 -0.03 2.10 16 8 N -0.74 -10.79 5.55 -61.47 -0.34 -11.13 16 9 C 0.51 9.99 7.44 -10.99 -0.08 9.91 16 10 O -0.52 -12.44 16.03 5.56 0.09 -12.35 16 11 C -0.07 -1.39 5.18 -29.04 -0.15 -1.54 16 12 C -0.18 -4.40 4.43 -103.91 -0.46 -4.86 16 13 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 14 C -0.24 -5.68 10.05 -39.29 -0.39 -6.07 16 15 C -0.11 -2.66 10.02 -39.66 -0.40 -3.05 16 16 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 17 C 0.13 3.48 5.56 -106.82 -0.59 2.89 16 18 C -0.46 -12.10 8.14 -37.74 -0.31 -12.41 16 19 H 0.07 1.91 6.67 -52.49 -0.35 1.56 16 20 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 21 N -0.80 -20.78 10.96 55.55 0.61 -20.18 16 22 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.09 -0.94 9.63 -39.46 -0.38 -1.32 16 27 C 0.07 0.79 6.72 -39.12 -0.26 0.53 16 28 O -0.49 -5.12 13.29 -34.22 -0.45 -5.57 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 31 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 32 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 35 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.40 4.80 8.46 -40.82 -0.35 4.45 16 37 H 0.08 1.24 8.05 -51.93 -0.42 0.83 16 38 H 0.10 1.88 7.08 -51.93 -0.37 1.51 16 39 H 0.08 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.12 3.24 6.20 -52.49 -0.33 2.91 16 43 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 44 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 45 H 0.39 2.27 9.06 45.56 0.41 2.69 16 LS Contribution 384.04 15.07 5.79 5.79 Total: -1.00 -33.81 384.04 -9.15 -42.96 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -4.43 Total: -21.90 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.27 Total: -31.30 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.72 Total: -21.30 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.81 -9.15 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777419960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.923 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds