Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 116.99878 * 2 1 4 4 C 1.38566 * 120.07215 * 0.02562 * 3 2 1 5 5 C 1.38245 * 119.99775 * 179.70626 * 4 3 2 6 6 C 1.38259 * 120.14412 * 0.55406 * 5 4 3 7 7 C 1.50698 * 119.92288 * 179.72562 * 6 5 4 8 8 N 1.46502 * 109.47027 * 269.71581 * 7 6 5 9 9 C 1.34777 * 120.00158 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99631 * 0.02562 * 9 8 7 11 11 C 1.50698 * 120.00058 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.46927 * 180.02562 * 11 9 8 13 13 C 1.37637 * 120.13328 * 264.99985 * 12 11 9 14 14 C 1.38610 * 120.25115 * 179.97438 * 13 12 11 15 15 C 1.38662 * 120.50078 * 0.02899 * 14 13 12 16 16 C 1.37595 * 120.24945 * 0.02562 * 15 14 13 17 17 C 1.40704 * 120.12208 * 84.73196 * 12 11 9 18 18 C 1.41393 * 120.24665 * 359.97438 * 17 12 11 19 19 H 1.07996 * 119.99758 * 333.90135 * 18 17 12 20 20 C 1.39952 * 119.99920 * 153.89974 * 18 17 12 21 21 N 1.30817 * 119.99956 * 343.71193 * 20 18 17 22 22 Si 1.86797 * 119.99651 * 163.71287 * 20 18 17 23 23 H 1.48495 * 109.47102 * 90.00226 * 22 20 18 24 24 H 1.48505 * 109.46943 * 210.00003 * 22 20 18 25 25 H 1.48500 * 109.47194 * 330.00031 * 22 20 18 26 26 C 1.38244 * 120.14592 * 359.44069 * 6 5 4 27 27 C 1.38571 * 119.99859 * 0.28593 * 26 6 5 28 28 O 1.35994 * 120.06632 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47271 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47075 * 300.00299 * 1 2 3 31 31 H 1.09004 * 109.46978 * 60.00223 * 1 2 3 32 32 H 1.08001 * 120.00086 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.92799 * 180.29002 * 5 4 3 34 34 H 1.09007 * 109.46886 * 149.72062 * 7 6 5 35 35 H 1.08996 * 109.47535 * 29.72637 * 7 6 5 36 36 H 0.97000 * 119.99875 * 0.02562 * 8 7 6 37 37 H 1.08997 * 109.46636 * 60.00523 * 11 9 8 38 38 H 1.08996 * 109.46994 * 300.00595 * 11 9 8 39 39 H 1.07999 * 119.87356 * 0.02562 * 13 12 11 40 40 H 1.07994 * 119.74901 * 179.97438 * 14 13 12 41 41 H 1.07998 * 119.87086 * 179.97438 * 15 14 13 42 42 H 1.07995 * 120.12964 * 179.97438 * 16 15 14 43 43 H 0.97000 * 120.00500 * 179.97438 * 21 20 18 44 44 H 1.07995 * 119.99998 * 180.25305 * 26 6 5 45 45 H 0.96701 * 113.99894 * 90.00760 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9223 3.6057 0.0067 6 6 3.3029 3.6799 0.0007 7 6 3.9836 5.0244 0.0012 8 7 4.2041 5.4606 -1.3799 9 6 4.8021 6.6431 -1.6258 10 8 5.1581 7.3459 -0.7037 11 6 5.0284 7.0920 -3.0464 12 6 5.7092 8.4365 -3.0460 13 6 4.9633 9.5886 -3.1488 14 6 5.5869 10.8265 -3.1480 15 6 6.9665 10.9196 -3.0446 16 6 7.7322 9.7810 -2.9419 17 6 7.1094 8.5189 -2.9348 18 6 7.8854 7.3423 -2.8224 19 1 7.4495 6.4455 -2.4076 20 6 9.2185 7.3400 -3.2486 21 7 9.6572 8.2935 -4.0293 22 14 10.3710 5.9751 -2.7027 23 1 10.3160 4.8597 -3.6815 24 1 11.7584 6.4994 -2.6273 25 1 9.9551 5.4813 -1.3654 26 6 4.0603 2.5233 0.0003 27 6 3.4359 1.2863 -0.0002 28 8 4.1796 0.1477 -0.0011 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2146 2.3196 0.0014 33 1 1.3342 4.5115 0.0118 34 1 4.9418 4.9463 0.5149 35 1 3.3538 5.7503 0.5154 36 1 3.9190 4.8986 -2.1173 37 1 4.0701 7.1698 -3.5598 38 1 5.6583 6.3663 -3.5608 39 1 3.8880 9.5280 -3.2294 40 1 4.9938 11.7254 -3.2295 41 1 7.4418 11.8893 -3.0455 42 1 8.8066 9.8557 -2.8619 43 1 10.5812 8.2922 -4.3245 44 1 5.1385 2.5840 -0.0002 45 1 4.3949 -0.1822 0.8820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777419960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = -98.158582 kcal Electronic energy + Delta-G solvation = -28256.348778 eV Core-core repulsion = 24202.887206 eV Total energy + Delta-G solvation = -4053.461571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50530 -40.70059 -39.21863 -38.81352 -37.87057 -35.48940 -35.39684 -33.45775 -31.77678 -31.31465 -31.01398 -28.98738 -28.18928 -26.99400 -25.97969 -23.66622 -22.81048 -22.50532 -22.02540 -20.95402 -19.55631 -19.05403 -18.60490 -17.80372 -17.63866 -17.35449 -17.04756 -16.68922 -16.26608 -16.15220 -15.83289 -15.50153 -15.32636 -15.21670 -14.95636 -14.86187 -14.41584 -14.36060 -13.79224 -13.56949 -13.36674 -13.32639 -12.96390 -12.91255 -12.87203 -12.73436 -12.57508 -12.48019 -12.20295 -12.12128 -12.03053 -11.58857 -11.30279 -11.19643 -11.00879 -10.78256 -10.01139 -9.89693 -9.20645 -9.19787 -9.09105 -8.58195 -6.27467 0.15854 0.18438 1.01479 1.15861 1.36015 1.47114 1.54406 1.87027 2.20575 2.24112 2.32995 2.73660 2.82346 3.19933 3.66999 3.78565 3.79574 4.02797 4.18424 4.25924 4.36573 4.39311 4.40300 4.44126 4.48307 4.59589 4.64834 4.72824 4.74412 4.79778 4.84770 4.90241 5.07773 5.09847 5.18548 5.21884 5.39049 5.50559 5.52889 5.57194 5.63171 5.79800 6.06004 6.19132 6.23590 6.25192 6.44240 6.68182 6.77326 6.83964 7.01221 7.13491 7.46648 8.38179 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013299 B = 0.002618 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.978714 B =10692.049622 C =12385.383046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.100 3.900 4 C -0.191 4.191 5 C -0.064 4.064 6 C -0.125 4.125 7 C 0.168 3.832 8 N -0.721 5.721 9 C 0.518 3.482 10 O -0.573 6.573 11 C -0.070 4.070 12 C -0.188 4.188 13 C -0.091 4.091 14 C -0.243 4.243 15 C -0.118 4.118 16 C -0.194 4.194 17 C 0.095 3.905 18 C -0.481 4.481 19 H 0.071 0.929 20 C 0.036 3.964 21 N -0.827 5.827 22 Si 0.970 3.030 23 H -0.256 1.256 24 H -0.268 1.268 25 H -0.267 1.267 26 C -0.094 4.094 27 C 0.058 3.942 28 O -0.501 6.501 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.285 0.715 44 H 0.134 0.866 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.770 -16.717 7.085 25.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.053 3.947 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.126 4.126 7 C 0.045 3.955 8 N -0.375 5.375 9 C 0.306 3.694 10 O -0.451 6.451 11 C -0.109 4.109 12 C -0.189 4.189 13 C -0.109 4.109 14 C -0.262 4.262 15 C -0.136 4.136 16 C -0.214 4.214 17 C 0.092 3.908 18 C -0.511 4.511 19 H 0.089 0.911 20 C -0.179 4.179 21 N -0.453 5.453 22 Si 0.791 3.209 23 H -0.181 1.181 24 H -0.192 1.192 25 H -0.192 1.192 26 C -0.113 4.113 27 C 0.012 3.988 28 O -0.313 6.313 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.178 0.822 33 H 0.167 0.833 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.248 0.752 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.096 0.904 44 H 0.152 0.848 45 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -17.264 -16.290 7.015 24.752 hybrid contribution 0.819 -0.435 0.387 1.005 sum -16.445 -16.725 7.403 24.596 Atomic orbital electron populations 1.23406 0.76295 1.05677 1.02544 1.86132 1.23529 1.26201 1.88351 1.19663 0.91712 0.85741 0.97559 1.21417 1.01463 0.90823 1.07203 1.21138 0.93173 0.98340 0.95571 1.19527 0.94099 0.93213 1.05728 1.20022 0.99557 0.92187 0.83691 1.46011 1.62086 1.20555 1.08840 1.21114 0.75699 0.80559 0.92031 1.90665 1.51085 1.55734 1.47661 1.20280 1.01910 0.95972 0.92781 1.19562 0.93430 0.93889 1.12062 1.20741 0.98361 0.92390 0.99393 1.20729 0.94134 0.97135 1.14211 1.20947 0.94676 0.97157 1.00824 1.21304 0.98925 0.92861 1.08291 1.17750 0.91857 0.93189 0.87964 1.19599 0.96226 0.97756 1.37509 0.91128 1.26657 0.99891 0.98998 0.92317 1.69878 1.17798 1.32866 1.24786 0.85393 0.77326 0.78551 0.79631 1.18079 1.19247 1.19158 1.21261 1.00842 0.90553 0.98658 1.17843 0.86796 0.86606 1.07507 1.84854 1.71878 1.39541 1.35016 0.86505 0.91168 0.91574 0.82157 0.83308 0.92449 0.90688 0.75232 0.86838 0.88689 0.86398 0.86642 0.87727 0.88581 0.90408 0.84797 0.73960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.79 10.28 -79.63 -0.82 -6.61 16 3 C 0.10 1.86 6.70 22.57 0.15 2.01 16 4 C -0.19 -2.78 9.04 22.35 0.20 -2.58 16 5 C -0.06 -1.01 9.69 22.28 0.22 -0.80 16 6 C -0.12 -2.49 5.25 -19.86 -0.10 -2.60 16 7 C 0.17 4.23 5.80 85.63 0.50 4.73 16 8 N -0.72 -20.08 5.55 -466.79 -2.59 -22.67 16 9 C 0.52 19.80 7.44 87.66 0.65 20.46 16 10 O -0.57 -27.72 16.03 -3.03 -0.05 -27.77 16 11 C -0.07 -2.68 5.18 29.10 0.15 -2.53 16 12 C -0.19 -9.11 4.43 -19.40 -0.09 -9.20 16 13 C -0.09 -4.10 9.66 22.22 0.21 -3.89 16 14 C -0.24 -11.16 10.05 22.46 0.23 -10.93 16 15 C -0.12 -5.88 10.02 22.22 0.22 -5.66 16 16 C -0.19 -10.92 8.69 22.73 0.20 -10.72 16 17 C 0.09 5.27 5.56 -21.29 -0.12 5.15 16 18 C -0.48 -26.40 8.14 23.46 0.19 -26.21 16 19 H 0.07 3.77 6.67 -2.91 -0.02 3.76 16 20 C 0.04 1.86 5.16 85.26 0.44 2.30 16 21 N -0.83 -44.59 10.96 21.83 0.24 -44.35 16 22 Si 0.97 39.97 29.59 68.60 2.03 42.00 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 C -0.09 -1.98 9.63 22.35 0.22 -1.77 16 27 C 0.06 1.21 6.72 22.57 0.15 1.37 16 28 O -0.50 -10.30 13.29 -79.62 -1.06 -11.36 16 29 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 31 H 0.07 0.44 7.67 -2.38 -0.02 0.42 16 32 H 0.16 1.39 6.30 -2.91 -0.02 1.37 16 33 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.06 1.64 8.08 -2.38 -0.02 1.62 16 35 H 0.07 1.87 8.08 -2.39 -0.02 1.86 16 36 H 0.41 9.13 8.46 -92.71 -0.78 8.35 16 37 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16 38 H 0.09 3.66 7.08 -2.39 -0.02 3.65 16 39 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.10 4.64 8.06 -2.91 -0.02 4.62 16 42 H 0.10 5.65 6.20 -2.91 -0.02 5.63 16 43 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 44 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 45 H 0.40 4.58 9.06 -74.06 -0.67 3.90 16 Total: -1.00 -75.53 384.04 1.88 -73.66 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.41 Total: 36.72 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 4.53 Total: -39.63 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -2.35 Total: -67.02 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.93 Total: -45.73 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -75.53 1.88 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777419960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.502 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds