Wall clock time and date at job start Sat Apr 11 2020 06:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00028 * 2 1 4 4 H 1.48497 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47148 * 300.00061 * 3 2 1 6 6 H 1.48504 * 109.47096 * 59.99994 * 3 2 1 7 7 C 1.38654 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99931 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99724 * 185.05457 * 9 7 2 11 11 C 1.38871 * 120.07093 * 354.47270 * 10 9 7 12 12 C 1.38101 * 119.93230 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06351 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92770 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47448 * 89.99847 * 14 13 12 16 16 C 1.34768 * 120.00179 * 180.02562 * 15 14 13 17 17 O 1.21282 * 120.00090 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00150 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47420 * 179.97438 * 18 16 15 20 20 C 1.38255 * 119.99942 * 264.72542 * 19 18 16 21 21 C 1.38215 * 119.99839 * 179.73971 * 20 19 18 22 22 C 1.38254 * 119.99989 * 0.55621 * 21 20 19 23 23 C 1.38219 * 119.99964 * 359.70187 * 22 21 20 24 24 C 1.38216 * 119.99659 * 84.99714 * 19 18 16 25 25 C 1.50693 * 120.00504 * 0.02562 * 24 19 18 26 26 O 1.42893 * 109.47398 * 179.97438 * 25 24 19 27 27 C 1.38299 * 120.13958 * 0.24969 * 13 12 11 28 28 C 1.38093 * 120.06953 * 359.45600 * 27 13 12 29 29 H 0.97002 * 120.00021 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.03853 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.96732 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.47376 * 209.99867 * 14 13 12 33 33 H 1.09001 * 109.47298 * 329.99829 * 14 13 12 34 34 H 0.97000 * 119.99373 * 359.97438 * 15 14 13 35 35 H 1.09002 * 109.47156 * 299.99724 * 18 16 15 36 36 H 1.09001 * 109.47522 * 59.99677 * 18 16 15 37 37 H 1.08001 * 120.00201 * 359.97438 * 20 19 18 38 38 H 1.08001 * 120.00075 * 180.27266 * 21 20 19 39 39 H 1.08000 * 120.00302 * 179.72174 * 22 21 20 40 40 H 1.07998 * 119.99836 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47126 * 300.00118 * 25 24 19 42 42 H 1.09009 * 109.47046 * 59.99737 * 25 24 19 43 43 H 0.96701 * 114.00705 * 180.02562 * 26 25 24 44 44 H 1.08005 * 119.96050 * 179.70549 * 27 13 12 45 45 H 1.07999 * 120.03730 * 180.26989 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4572 -3.4394 0.0921 12 6 4.2025 -4.5971 0.1997 13 6 3.5687 -5.8205 0.3200 14 6 4.3850 -7.0819 0.4366 15 7 4.6566 -7.3591 1.8493 16 6 5.3760 -8.4444 2.1968 17 8 5.7982 -9.1919 1.3401 18 6 5.6550 -8.7299 3.6500 19 6 6.4714 -9.9912 3.7665 20 6 5.8442 -11.2018 3.9957 21 6 6.5925 -12.3594 4.0972 22 6 7.9691 -12.3051 3.9811 23 6 8.5965 -11.0940 3.7573 24 6 7.8475 -9.9369 3.6499 25 6 8.5317 -8.6164 3.4068 26 8 9.9437 -8.8194 3.3247 27 6 2.1874 -5.8892 0.3279 28 6 1.4367 -4.7346 0.2269 29 1 -0.4850 0.8401 0.0004 30 1 3.9527 -2.4845 -0.0031 31 1 5.2813 -4.5471 0.1889 32 1 3.8311 -7.9145 0.0029 33 1 5.3273 -6.9555 -0.0966 34 1 4.3193 -6.7610 2.5344 35 1 6.2083 -7.8971 4.0841 36 1 4.7126 -8.8569 4.1828 37 1 4.7693 -11.2436 4.0916 38 1 6.1023 -13.3058 4.2719 39 1 8.5543 -13.2090 4.0649 40 1 9.6718 -11.0517 3.6661 41 1 8.1710 -8.1870 2.4721 42 1 8.3099 -7.9355 4.2287 43 1 10.4492 -8.0098 3.1693 44 1 1.6955 -6.8465 0.4173 45 1 0.3581 -4.7884 0.2375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779762227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:36 Heat of formation + Delta-G solvation = -69.227756 kcal Electronic energy + Delta-G solvation = -27588.332986 eV Core-core repulsion = 23536.125950 eV Total energy + Delta-G solvation = -4052.207036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.39996 -39.34828 -38.83218 -36.92715 -36.86317 -34.44702 -33.29775 -32.40821 -31.56207 -30.35964 -30.13644 -28.04247 -26.26065 -25.77772 -24.61218 -22.28884 -22.10368 -21.37566 -20.68235 -20.23530 -18.12711 -17.78045 -17.43985 -16.94578 -16.80309 -15.93648 -15.71780 -15.26110 -15.01123 -14.95083 -14.64728 -14.51494 -14.28499 -13.99240 -13.76616 -13.74806 -13.39465 -13.25172 -12.96522 -12.83705 -12.50787 -12.39914 -12.37423 -12.00317 -11.70823 -11.45417 -11.20566 -11.07807 -11.00128 -10.83426 -10.73231 -10.61269 -10.51407 -9.97762 -9.47105 -9.02064 -8.97140 -8.92193 -8.76456 -8.33861 -7.37425 -6.57109 -4.16052 1.12039 1.25491 2.02363 2.07875 2.59600 3.03895 3.06336 3.12014 3.28826 3.67770 3.86461 3.86687 4.41020 4.45091 4.57102 4.76032 4.83029 4.89682 4.95485 4.97642 5.05562 5.12476 5.14661 5.21552 5.24838 5.35408 5.37605 5.55077 5.60936 5.75129 5.78569 5.87398 5.91594 6.07358 6.26608 6.29818 6.35870 6.41521 6.45446 6.55140 6.75283 6.82498 6.91084 7.09395 7.22043 7.28788 7.30563 7.53714 7.66843 7.87543 8.20881 8.88271 9.56160 10.60390 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.001848 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.944084 B =15147.179287 C =15983.026532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.215 4.215 14 C 0.179 3.821 15 N -0.723 5.723 16 C 0.509 3.491 17 O -0.536 6.536 18 C -0.109 4.109 19 C -0.059 4.059 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.097 4.097 24 C -0.076 4.076 25 C 0.115 3.885 26 O -0.569 6.569 27 C -0.054 4.054 28 C -0.195 4.195 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.402 0.598 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.383 0.617 44 H 0.112 0.888 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.819 -16.939 9.540 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.070 4.070 13 C -0.217 4.217 14 C 0.057 3.943 15 N -0.375 5.375 16 C 0.294 3.706 17 O -0.413 6.413 18 C -0.149 4.149 19 C -0.059 4.059 20 C -0.125 4.125 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.115 4.115 24 C -0.076 4.076 25 C 0.038 3.962 26 O -0.375 6.375 27 C -0.073 4.073 28 C -0.214 4.214 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.236 0.764 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.230 0.770 44 H 0.130 0.870 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.495 -17.861 8.971 24.116 hybrid contribution 0.333 1.793 0.154 1.830 sum 13.828 -16.067 9.124 23.078 Atomic orbital electron populations 1.70044 1.06010 1.27805 1.45396 1.25330 0.95873 0.98963 0.96336 0.85626 0.79133 0.80184 0.78366 1.19043 1.20044 1.20044 1.21404 0.91893 0.80696 1.52958 0.88855 1.83980 1.34528 1.11579 1.77468 1.19440 0.90317 0.88060 0.91621 1.21158 0.93782 0.98959 1.11726 1.20632 0.98326 0.91635 0.96387 1.19203 0.93567 0.93575 1.15318 1.19972 0.98427 0.94870 0.80999 1.46378 1.54785 1.26755 1.09590 1.20481 0.78378 0.80995 0.90713 1.90734 1.51181 1.47514 1.51839 1.20737 1.01893 0.97279 0.94992 1.18969 0.92302 0.94206 1.00454 1.20917 0.99656 0.91839 1.00104 1.21102 0.94159 0.98082 1.00477 1.21161 0.94758 0.97762 1.00520 1.20935 1.00505 0.91515 0.98503 1.19449 0.92645 0.94983 1.00544 1.20922 0.80937 0.94230 1.00101 1.86411 1.17802 1.37410 1.95904 1.20530 0.92764 0.96824 0.97194 1.20222 0.99698 0.90245 1.11270 0.91891 0.85411 0.87457 0.91576 0.91675 0.76364 0.88106 0.87690 0.85992 0.86092 0.86150 0.85176 0.92002 0.92339 0.76966 0.86969 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.33 13.67 55.48 0.76 -23.57 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.71 29.55 -169.99 -5.02 14.68 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.39 -10.52 9.49 30.89 0.29 -10.23 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.72 9.76 0.05 0.00 -4.72 16 10 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.24 -4.77 9.17 -39.40 -0.36 -5.13 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.22 -3.30 5.25 -104.57 -0.55 -3.85 16 14 C 0.18 2.39 5.80 -5.19 -0.03 2.36 16 15 N -0.72 -8.20 5.55 -61.47 -0.34 -8.55 16 16 C 0.51 6.10 7.47 -10.99 -0.08 6.01 16 17 O -0.54 -8.62 16.03 5.56 0.09 -8.53 16 18 C -0.11 -0.96 5.33 -29.03 -0.15 -1.11 16 19 C -0.06 -0.63 4.37 -104.62 -0.46 -1.08 16 20 C -0.11 -1.08 9.68 -39.58 -0.38 -1.46 16 21 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.10 -1.06 9.38 -39.58 -0.37 -1.44 16 24 C -0.08 -0.85 5.88 -104.63 -0.62 -1.47 16 25 C 0.12 1.09 6.22 36.00 0.22 1.31 16 26 O -0.57 -5.11 12.14 -35.23 -0.43 -5.54 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 28 C -0.20 -3.82 9.99 -39.40 -0.39 -4.22 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.40 3.90 8.46 -40.82 -0.35 3.55 16 35 H 0.10 0.68 6.84 -51.93 -0.36 0.32 16 36 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 1.38 7.01 -52.49 -0.37 1.01 16 41 H 0.06 0.64 7.78 -51.93 -0.40 0.23 16 42 H 0.06 0.43 7.51 -51.92 -0.39 0.04 16 43 H 0.38 1.68 9.12 45.56 0.42 2.09 16 44 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 45 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -33.48 386.12 -8.87 -42.35 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -4.95 Total: 9.65 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -4.80 Total: -21.59 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.42 Total: -32.11 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.34 Total: -18.79 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.48 -8.87 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779762227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.881 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds