Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86803 * 120.00028 * 2 1 4 4 H 1.48497 * 109.47263 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47148 * 300.00061 * 3 2 1 6 6 H 1.48504 * 109.47096 * 59.99994 * 3 2 1 7 7 C 1.38654 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99931 * 180.02562 * 7 2 1 9 9 O 1.34826 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.35754 * 116.99724 * 185.05457 * 9 7 2 11 11 C 1.38871 * 120.07093 * 354.47270 * 10 9 7 12 12 C 1.38101 * 119.93230 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06351 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.92770 * 179.97438 * 13 12 11 15 15 N 1.46503 * 109.47448 * 89.99847 * 14 13 12 16 16 C 1.34768 * 120.00179 * 180.02562 * 15 14 13 17 17 O 1.21282 * 120.00090 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00150 * 180.02562 * 16 15 14 19 19 C 1.50701 * 109.47420 * 179.97438 * 18 16 15 20 20 C 1.38255 * 119.99942 * 264.72542 * 19 18 16 21 21 C 1.38215 * 119.99839 * 179.73971 * 20 19 18 22 22 C 1.38254 * 119.99989 * 0.55621 * 21 20 19 23 23 C 1.38219 * 119.99964 * 359.70187 * 22 21 20 24 24 C 1.38216 * 119.99659 * 84.99714 * 19 18 16 25 25 C 1.50693 * 120.00504 * 0.02562 * 24 19 18 26 26 O 1.42893 * 109.47398 * 179.97438 * 25 24 19 27 27 C 1.38299 * 120.13958 * 0.24969 * 13 12 11 28 28 C 1.38093 * 120.06953 * 359.45600 * 27 13 12 29 29 H 0.97002 * 120.00021 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.03853 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.96732 * 179.97438 * 12 11 10 32 32 H 1.09002 * 109.47376 * 209.99867 * 14 13 12 33 33 H 1.09001 * 109.47298 * 329.99829 * 14 13 12 34 34 H 0.97000 * 119.99373 * 359.97438 * 15 14 13 35 35 H 1.09002 * 109.47156 * 299.99724 * 18 16 15 36 36 H 1.09001 * 109.47522 * 59.99677 * 18 16 15 37 37 H 1.08001 * 120.00201 * 359.97438 * 20 19 18 38 38 H 1.08001 * 120.00075 * 180.27266 * 21 20 19 39 39 H 1.08000 * 120.00302 * 179.72174 * 22 21 20 40 40 H 1.07998 * 119.99836 * 180.02562 * 23 22 21 41 41 H 1.08997 * 109.47126 * 300.00118 * 25 24 19 42 42 H 1.09009 * 109.47046 * 59.99737 * 25 24 19 43 43 H 0.96701 * 114.00705 * 180.02562 * 26 25 24 44 44 H 1.08005 * 119.96050 * 179.70549 * 27 13 12 45 45 H 1.07999 * 120.03730 * 180.26989 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1055 11 6 3.4572 -3.4394 0.0921 12 6 4.2025 -4.5971 0.1997 13 6 3.5687 -5.8205 0.3200 14 6 4.3850 -7.0819 0.4366 15 7 4.6566 -7.3591 1.8493 16 6 5.3760 -8.4444 2.1968 17 8 5.7982 -9.1919 1.3401 18 6 5.6550 -8.7299 3.6500 19 6 6.4714 -9.9912 3.7665 20 6 5.8442 -11.2018 3.9957 21 6 6.5925 -12.3594 4.0972 22 6 7.9691 -12.3051 3.9811 23 6 8.5965 -11.0940 3.7573 24 6 7.8475 -9.9369 3.6499 25 6 8.5317 -8.6164 3.4068 26 8 9.9437 -8.8194 3.3247 27 6 2.1874 -5.8892 0.3279 28 6 1.4367 -4.7346 0.2269 29 1 -0.4850 0.8401 0.0004 30 1 3.9527 -2.4845 -0.0031 31 1 5.2813 -4.5471 0.1889 32 1 3.8311 -7.9145 0.0029 33 1 5.3273 -6.9555 -0.0966 34 1 4.3193 -6.7610 2.5344 35 1 6.2083 -7.8971 4.0841 36 1 4.7126 -8.8569 4.1828 37 1 4.7693 -11.2436 4.0916 38 1 6.1023 -13.3058 4.2719 39 1 8.5543 -13.2090 4.0649 40 1 9.6718 -11.0517 3.6661 41 1 8.1710 -8.1870 2.4721 42 1 8.3099 -7.9355 4.2287 43 1 10.4492 -8.0098 3.1693 44 1 1.6955 -6.8465 0.4173 45 1 0.3581 -4.7884 0.2375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779762227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = -92.299521 kcal Electronic energy + Delta-G solvation = -27589.333453 eV Core-core repulsion = 23536.125950 eV Total energy + Delta-G solvation = -4053.207503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.27795 -40.79398 -39.85483 -38.46395 -37.54584 -35.62336 -34.28822 -34.02888 -32.28160 -31.84654 -31.46757 -28.94271 -27.58054 -26.91413 -25.93620 -23.64654 -23.07309 -22.29273 -21.99655 -21.12136 -19.87410 -18.92124 -18.44173 -18.15525 -17.57462 -16.89936 -16.70954 -16.34671 -16.23599 -15.98505 -15.79374 -15.66424 -15.54158 -15.46317 -15.07010 -14.67757 -14.58468 -14.36610 -14.24161 -13.96813 -13.70301 -13.40607 -13.25620 -13.07088 -13.01464 -12.86652 -12.57612 -12.35250 -12.23604 -12.09418 -11.90137 -11.72773 -11.26495 -11.19937 -11.02997 -10.79326 -10.04385 -9.80961 -9.68492 -9.49265 -9.00278 -8.48548 -6.16670 0.37505 0.50400 0.57190 0.57865 1.36124 1.43270 1.53851 1.68789 2.16684 2.31638 2.81617 2.93998 3.18719 3.28432 3.48637 3.70421 3.86391 3.90415 4.02767 4.09761 4.11805 4.17530 4.19886 4.32450 4.40415 4.45832 4.49171 4.56914 4.62188 4.69980 4.77316 4.80899 4.85169 5.04368 5.11491 5.14534 5.18952 5.26668 5.45800 5.53137 5.55967 5.63617 5.68675 5.69282 5.75102 6.01518 6.12204 6.16146 6.62915 6.84997 6.96486 7.30201 7.75920 8.74437 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.001848 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.944084 B =15147.179287 C =15983.026532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.122 3.878 11 C -0.243 4.243 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.185 3.815 15 N -0.715 5.715 16 C 0.513 3.487 17 O -0.578 6.578 18 C -0.103 4.103 19 C -0.073 4.073 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.096 4.096 25 C 0.118 3.882 26 O -0.585 6.585 27 C -0.044 4.044 28 C -0.205 4.205 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.140 0.860 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.413 0.587 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.401 0.599 44 H 0.147 0.853 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.771 -18.513 10.685 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.173 1.173 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.122 0.878 9 O -0.136 6.136 10 C 0.071 3.929 11 C -0.263 4.263 12 C -0.064 4.064 13 C -0.182 4.182 14 C 0.062 3.938 15 N -0.367 5.367 16 C 0.301 3.699 17 O -0.458 6.458 18 C -0.142 4.142 19 C -0.074 4.074 20 C -0.137 4.137 21 C -0.146 4.146 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.097 4.097 25 C 0.040 3.960 26 O -0.394 6.394 27 C -0.062 4.062 28 C -0.224 4.224 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.250 0.750 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.251 0.749 44 H 0.165 0.835 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.486 -19.467 10.137 26.861 hybrid contribution -0.107 1.851 -0.179 1.863 sum 15.379 -17.616 9.958 25.416 Atomic orbital electron populations 1.70185 1.08026 1.28782 1.48680 1.26583 0.96830 1.02768 0.95855 0.84535 0.78339 0.74902 0.78489 1.17321 1.19582 1.19372 1.21867 0.92576 0.81305 1.53063 0.87840 1.83950 1.36097 1.12694 1.80852 1.20000 0.91658 0.87941 0.93304 1.21243 0.92983 1.00098 1.11936 1.20936 0.99805 0.90678 0.94966 1.19490 0.93423 0.94127 1.11158 1.19842 0.98122 0.93422 0.82421 1.46175 1.54687 1.26990 1.08893 1.20948 0.77201 0.80076 0.91684 1.90728 1.52816 1.48917 1.53326 1.20773 1.03277 0.97339 0.92785 1.19215 0.92358 0.95184 1.00613 1.21264 1.00692 0.91956 0.99765 1.21433 0.94167 0.99060 0.99973 1.21448 0.95347 0.98124 0.99991 1.21082 1.00560 0.92328 0.99584 1.19791 0.93353 0.95758 1.00753 1.20908 0.80981 0.93804 1.00257 1.86376 1.17919 1.39151 1.95953 1.20876 0.93107 0.96937 0.95309 1.20453 1.00081 0.90430 1.11429 0.91823 0.86217 0.84266 0.91234 0.91407 0.75038 0.85760 0.85070 0.84363 0.83949 0.84357 0.85636 0.93149 0.90124 0.74889 0.83540 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.91 13.67 21.61 0.30 -54.62 16 2 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 3 Si 1.02 41.33 29.55 68.60 2.03 43.35 16 4 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.41 -23.02 9.49 67.92 0.64 -22.38 16 8 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 9 O -0.23 -13.25 9.76 -22.74 -0.22 -13.47 16 10 C 0.12 5.67 6.65 22.58 0.15 5.82 16 11 C -0.24 -9.69 9.17 22.39 0.21 -9.48 16 12 C -0.05 -1.38 9.69 22.25 0.22 -1.16 16 13 C -0.18 -4.90 5.25 -19.83 -0.10 -5.00 16 14 C 0.18 4.18 5.80 85.63 0.50 4.67 16 15 N -0.72 -13.32 5.55 -466.79 -2.59 -15.91 16 16 C 0.51 10.60 7.47 87.66 0.66 11.25 16 17 O -0.58 -17.25 16.03 -3.04 -0.05 -17.30 16 18 C -0.10 -1.43 5.33 29.10 0.16 -1.27 16 19 C -0.07 -1.39 4.37 -19.87 -0.09 -1.47 16 20 C -0.12 -2.12 9.68 22.27 0.22 -1.91 16 21 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 22 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 23 C -0.12 -2.50 9.38 22.27 0.21 -2.29 16 24 C -0.10 -2.01 5.88 -19.87 -0.12 -2.13 16 25 C 0.12 2.00 6.22 71.23 0.44 2.44 16 26 O -0.59 -9.75 12.14 -148.98 -1.81 -11.56 16 27 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 28 C -0.20 -7.98 9.99 22.39 0.22 -7.76 16 29 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 30 H 0.12 4.90 5.64 -2.91 -0.02 4.88 16 31 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 32 H 0.07 1.61 8.08 -2.39 -0.02 1.59 16 33 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 34 H 0.41 6.14 8.46 -92.71 -0.78 5.35 16 35 H 0.12 1.15 6.84 -2.39 -0.02 1.13 16 36 H 0.13 1.16 8.05 -2.39 -0.02 1.14 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 39 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 40 H 0.13 2.65 7.01 -2.91 -0.02 2.63 16 41 H 0.05 0.96 7.78 -2.39 -0.02 0.94 16 42 H 0.08 0.96 7.51 -2.38 -0.02 0.94 16 43 H 0.40 2.88 9.12 -74.06 -0.68 2.21 16 44 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 45 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -77.82 386.12 1.68 -76.15 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.41 Total: 30.00 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 4.43 Total: -36.66 kcal Atomic # 7 Polarization: -68.23 SS G_CDS: -2.29 Total: -70.52 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -2.08 Total: -42.33 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -77.82 1.68 -76.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779762227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.152 kcal (2) G-P(sol) polarization free energy of solvation -77.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds