Wall clock time and date at job start Sat Apr 11 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.46950 * 2 1 4 4 C 1.34231 * 116.99725 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00036 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99696 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.46795 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47205 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47005 * 304.99850 * 8 7 6 10 10 O 1.42901 * 109.47199 * 64.99447 * 8 7 6 11 11 C 1.52993 * 109.47315 * 184.99896 * 8 7 6 12 12 N 1.46503 * 109.47164 * 179.97438 * 11 8 7 13 13 C 1.39930 * 119.99939 * 179.97438 * 12 11 8 14 14 C 1.38711 * 120.08075 * 359.72641 * 13 12 11 15 15 C 1.38210 * 120.01983 * 179.69675 * 14 13 12 16 16 C 1.38534 * 120.17237 * 0.60168 * 15 14 13 17 17 F 1.35097 * 119.92269 * 179.69902 * 16 15 14 18 18 C 1.38356 * 120.15655 * 359.67686 * 16 15 14 19 19 C 1.38716 * 119.98270 * 0.02562 * 18 16 15 20 20 O 1.35794 * 120.08612 * 180.02562 * 19 18 16 21 21 C 1.34805 * 117.00460 * 354.40709 * 20 19 18 22 22 H 1.07997 * 119.99380 * 5.05723 * 21 20 19 23 23 C 1.38628 * 120.00456 * 185.06411 * 21 20 19 24 24 N 1.31575 * 120.00126 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99900 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46865 * 90.00031 * 25 23 21 27 27 H 1.48492 * 109.47011 * 210.00344 * 25 23 21 28 28 H 1.48502 * 109.46888 * 330.00553 * 25 23 21 29 29 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47403 * 299.99996 * 1 2 3 31 31 H 1.09003 * 109.47133 * 60.00428 * 1 2 3 32 32 H 1.09001 * 109.46946 * 239.99730 * 2 1 3 33 33 H 1.09003 * 109.46901 * 120.00321 * 2 1 3 34 34 H 1.09003 * 109.47175 * 60.00625 * 6 4 3 35 35 H 1.08995 * 109.47557 * 300.00080 * 6 4 3 36 36 H 1.08999 * 109.47704 * 60.00067 * 7 6 4 37 37 H 1.09005 * 109.47103 * 299.99411 * 7 6 4 38 38 H 0.96697 * 113.99894 * 60.00241 * 10 8 7 39 39 H 1.09000 * 109.47047 * 299.99928 * 11 8 7 40 40 H 1.09003 * 109.47310 * 59.99611 * 11 8 7 41 41 H 0.97000 * 120.00139 * 359.97438 * 12 11 8 42 42 H 1.08000 * 119.98991 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.91940 * 180.27775 * 15 14 13 44 44 H 1.08006 * 120.00333 * 180.02562 * 18 16 15 45 45 H 0.97000 * 119.99759 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 6 6.0335 4.2711 0.0002 9 1 5.6278 4.8322 -0.8416 10 8 5.6892 4.9290 1.2212 11 6 7.5563 4.1931 -0.1253 12 7 8.1162 5.5469 -0.1259 13 6 9.4992 5.7320 -0.2309 14 6 10.3420 4.6347 -0.3289 15 6 11.7074 4.8191 -0.4389 16 6 12.2394 6.0982 -0.4392 17 9 13.5752 6.2724 -0.5408 18 6 11.4059 7.1977 -0.3360 19 6 10.0341 7.0203 -0.2315 20 8 9.2141 8.0980 -0.1306 21 6 9.8018 9.3062 -0.0212 22 1 10.8754 9.3933 -0.0986 23 6 9.0281 10.4368 0.1908 24 7 9.6018 11.6160 0.2981 25 14 7.1709 10.2861 0.3241 26 1 6.7929 10.0648 1.7431 27 1 6.5363 11.5350 -0.1682 28 1 6.7073 9.1384 -0.4964 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5844 3.4700 0.8896 35 1 3.5852 3.4690 -0.8904 36 1 5.7847 2.3248 -0.8896 37 1 5.7845 2.3256 0.8904 38 1 6.0184 4.4840 2.0141 39 1 7.9620 3.6321 0.7165 40 1 7.8189 3.6913 -1.0567 41 1 7.5282 6.3150 -0.0534 42 1 9.9309 3.6360 -0.3238 43 1 12.3617 3.9637 -0.5196 44 1 11.8233 8.1938 -0.3368 45 1 9.0604 12.4070 0.4468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819460191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:03 Heat of formation + Delta-G solvation = -192.131328 kcal Electronic energy + Delta-G solvation = -28793.925075 eV Core-core repulsion = 24305.619315 eV Total energy + Delta-G solvation = -4488.305760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.10034 -40.86209 -39.45899 -38.39668 -37.05683 -36.59760 -34.40575 -33.41403 -32.39899 -32.09911 -29.80642 -29.48243 -27.35423 -25.31977 -24.91259 -23.37332 -22.26587 -21.32589 -21.24278 -20.85048 -18.18102 -18.08589 -17.80323 -17.25383 -16.78158 -16.67506 -16.27002 -16.16293 -15.45921 -15.29377 -14.99267 -14.85974 -14.25353 -14.12793 -14.00765 -13.96122 -13.66473 -13.56463 -13.31804 -13.07914 -12.96167 -12.87384 -12.54613 -12.33213 -12.30314 -12.13304 -12.02122 -11.55747 -11.47732 -11.33650 -11.09704 -10.96134 -10.84781 -10.79753 -10.57557 -10.36107 -10.23079 -9.55364 -9.38896 -8.89637 -7.86784 -6.60640 -6.43081 -4.07889 1.85022 2.01269 2.11186 2.25585 3.19861 3.24687 3.36074 3.66446 4.19327 4.20457 4.27195 4.35830 4.38289 4.45631 4.51677 4.62281 4.65836 4.79278 4.84804 4.94594 5.01178 5.06386 5.14259 5.18999 5.28217 5.29840 5.43438 5.47109 5.50925 5.56959 5.69055 5.73807 5.90795 6.00999 6.07332 6.23334 6.46853 6.72437 6.94337 6.99268 7.38169 7.42752 7.47705 7.60480 7.86747 8.01335 8.23364 8.91201 9.50049 10.64436 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.002411 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.767312 B =11611.132630 C =13935.119574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.510 6.510 6 C -0.110 4.110 7 C -0.137 4.137 8 C 0.096 3.904 9 H 0.108 0.892 10 O -0.554 6.554 11 C 0.102 3.898 12 N -0.743 5.743 13 C 0.151 3.849 14 C -0.145 4.145 15 C -0.190 4.190 16 C 0.087 3.913 17 F -0.155 7.155 18 C -0.227 4.227 19 C 0.128 3.872 20 O -0.214 6.214 21 C -0.385 4.385 22 H 0.106 0.894 23 C 0.063 3.937 24 N -0.878 5.878 25 Si 0.907 3.093 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.260 1.260 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.377 0.623 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.408 0.592 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.145 0.855 45 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 -20.978 -0.250 25.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.305 3.695 5 O -0.398 6.398 6 C -0.148 4.148 7 C -0.176 4.176 8 C 0.037 3.963 9 H 0.126 0.874 10 O -0.359 6.359 11 C -0.024 4.024 12 N -0.378 5.378 13 C 0.050 3.950 14 C -0.168 4.168 15 C -0.210 4.210 16 C 0.066 3.934 17 F -0.134 7.134 18 C -0.248 4.248 19 C 0.074 3.926 20 O -0.120 6.120 21 C -0.461 4.461 22 H 0.123 0.877 23 C -0.141 4.141 24 N -0.515 5.515 25 Si 0.733 3.267 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.184 1.184 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.224 0.776 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.244 0.756 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.162 0.838 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.215 -20.778 -0.635 25.760 hybrid contribution -0.230 -0.158 0.408 0.495 sum -15.445 -20.936 -0.226 26.017 Atomic orbital electron populations 1.21817 0.92530 1.03045 1.03650 1.23037 0.95468 0.80164 1.02620 1.86523 1.24743 1.32476 1.83981 1.23904 0.80482 0.93052 0.72057 1.90678 1.60392 1.43369 1.45375 1.21360 0.96161 0.90524 1.06742 1.22084 0.92910 0.97606 1.04954 1.22159 0.93164 0.92337 0.88686 0.87434 1.86636 1.79363 1.54440 1.15481 1.21827 0.93004 0.86056 1.01503 1.44149 1.03452 1.06443 1.83802 1.17077 0.84108 0.90556 1.03258 1.19930 0.92065 0.96279 1.08574 1.20358 0.95184 0.94890 1.10559 1.17249 0.76509 0.93862 1.05758 1.91395 1.31371 1.96448 1.94158 1.20933 0.92763 0.99356 1.11759 1.18293 0.88845 0.86374 0.99133 1.83492 1.33747 1.13591 1.81155 1.20722 0.94878 0.79952 1.50515 0.87654 1.24459 1.00286 0.93634 0.95688 1.69657 1.36845 0.98181 1.46848 0.86166 0.83269 0.78044 0.79243 1.19850 1.20888 1.18418 0.90186 0.91387 0.91401 0.91211 0.91214 0.86787 0.87412 0.89640 0.90231 0.77562 0.92440 0.91857 0.75567 0.86077 0.86338 0.83797 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.42 6.19 37.16 0.23 0.65 16 3 O -0.36 -3.17 10.22 -39.26 -0.40 -3.57 16 4 C 0.46 4.29 7.96 36.01 0.29 4.58 16 5 O -0.51 -6.07 15.73 -18.75 -0.29 -6.37 16 6 C -0.11 -0.79 5.71 -27.88 -0.16 -0.95 16 7 C -0.14 -1.03 4.18 -26.73 -0.11 -1.14 16 8 C 0.10 0.88 3.05 -26.73 -0.08 0.80 16 9 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 10 O -0.55 -5.78 12.62 -35.23 -0.44 -6.22 16 11 C 0.10 1.13 4.58 -4.04 -0.02 1.11 16 12 N -0.74 -11.85 5.62 -58.46 -0.33 -12.18 16 13 C 0.15 2.81 6.67 -83.52 -0.56 2.26 16 14 C -0.14 -2.37 9.31 -39.42 -0.37 -2.74 16 15 C -0.19 -3.27 10.02 -39.48 -0.40 -3.67 16 16 C 0.09 1.74 7.29 -39.43 -0.29 1.45 16 17 F -0.15 -3.05 17.26 2.25 0.04 -3.01 16 18 C -0.23 -5.03 9.14 -39.36 -0.36 -5.39 16 19 C 0.13 2.86 6.66 -38.94 -0.26 2.60 16 20 O -0.21 -5.37 7.83 -0.02 0.00 -5.37 16 21 C -0.39 -10.63 9.95 30.88 0.31 -10.32 16 22 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 23 C 0.06 1.73 5.49 -17.52 -0.10 1.63 16 24 N -0.88 -25.13 13.96 55.48 0.77 -24.35 16 25 Si 0.91 21.16 28.62 -169.99 -4.86 16.29 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 28 H -0.26 -5.95 7.11 56.52 0.40 -5.54 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 33 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 34 H 0.11 0.76 7.82 -51.93 -0.41 0.35 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.38 2.83 9.05 45.56 0.41 3.25 16 39 H 0.06 0.59 7.94 -51.93 -0.41 0.18 16 40 H 0.06 0.66 7.96 -51.93 -0.41 0.24 16 41 H 0.41 7.20 7.72 -40.82 -0.31 6.88 16 42 H 0.12 1.61 6.73 -52.49 -0.35 1.25 16 43 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 44 H 0.14 3.40 5.64 -52.48 -0.30 3.10 16 45 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -32.01 387.53 -6.60 -38.61 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.43 Total: 9.79 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.49 Total: -9.46 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.45 Total: -36.53 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.14 Total: -21.53 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.86 Total: 16.29 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.01 -6.60 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819460191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.524 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds