Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.46950 * 2 1 4 4 C 1.34231 * 116.99725 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00036 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99696 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.46795 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47205 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47005 * 304.99850 * 8 7 6 10 10 O 1.42901 * 109.47199 * 64.99447 * 8 7 6 11 11 C 1.52993 * 109.47315 * 184.99896 * 8 7 6 12 12 N 1.46503 * 109.47164 * 179.97438 * 11 8 7 13 13 C 1.39930 * 119.99939 * 179.97438 * 12 11 8 14 14 C 1.38711 * 120.08075 * 359.72641 * 13 12 11 15 15 C 1.38210 * 120.01983 * 179.69675 * 14 13 12 16 16 C 1.38534 * 120.17237 * 0.60168 * 15 14 13 17 17 F 1.35097 * 119.92269 * 179.69902 * 16 15 14 18 18 C 1.38356 * 120.15655 * 359.67686 * 16 15 14 19 19 C 1.38716 * 119.98270 * 0.02562 * 18 16 15 20 20 O 1.35794 * 120.08612 * 180.02562 * 19 18 16 21 21 C 1.34805 * 117.00460 * 354.40709 * 20 19 18 22 22 H 1.07997 * 119.99380 * 5.05723 * 21 20 19 23 23 C 1.38628 * 120.00456 * 185.06411 * 21 20 19 24 24 N 1.31575 * 120.00126 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99900 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46865 * 90.00031 * 25 23 21 27 27 H 1.48492 * 109.47011 * 210.00344 * 25 23 21 28 28 H 1.48502 * 109.46888 * 330.00553 * 25 23 21 29 29 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47403 * 299.99996 * 1 2 3 31 31 H 1.09003 * 109.47133 * 60.00428 * 1 2 3 32 32 H 1.09001 * 109.46946 * 239.99730 * 2 1 3 33 33 H 1.09003 * 109.46901 * 120.00321 * 2 1 3 34 34 H 1.09003 * 109.47175 * 60.00625 * 6 4 3 35 35 H 1.08995 * 109.47557 * 300.00080 * 6 4 3 36 36 H 1.08999 * 109.47704 * 60.00067 * 7 6 4 37 37 H 1.09005 * 109.47103 * 299.99411 * 7 6 4 38 38 H 0.96697 * 113.99894 * 60.00241 * 10 8 7 39 39 H 1.09000 * 109.47047 * 299.99928 * 11 8 7 40 40 H 1.09003 * 109.47310 * 59.99611 * 11 8 7 41 41 H 0.97000 * 120.00139 * 359.97438 * 12 11 8 42 42 H 1.08000 * 119.98991 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.91940 * 180.27775 * 15 14 13 44 44 H 1.08006 * 120.00333 * 180.02562 * 18 16 15 45 45 H 0.97000 * 119.99759 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8573 0.0001 8 6 6.0335 4.2711 0.0002 9 1 5.6278 4.8322 -0.8416 10 8 5.6892 4.9290 1.2212 11 6 7.5563 4.1931 -0.1253 12 7 8.1162 5.5469 -0.1259 13 6 9.4992 5.7320 -0.2309 14 6 10.3420 4.6347 -0.3289 15 6 11.7074 4.8191 -0.4389 16 6 12.2394 6.0982 -0.4392 17 9 13.5752 6.2724 -0.5408 18 6 11.4059 7.1977 -0.3360 19 6 10.0341 7.0203 -0.2315 20 8 9.2141 8.0980 -0.1306 21 6 9.8018 9.3062 -0.0212 22 1 10.8754 9.3933 -0.0986 23 6 9.0281 10.4368 0.1908 24 7 9.6018 11.6160 0.2981 25 14 7.1709 10.2861 0.3241 26 1 6.7929 10.0648 1.7431 27 1 6.5363 11.5350 -0.1682 28 1 6.7073 9.1384 -0.4964 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.5844 3.4700 0.8896 35 1 3.5852 3.4690 -0.8904 36 1 5.7847 2.3248 -0.8896 37 1 5.7845 2.3256 0.8904 38 1 6.0184 4.4840 2.0141 39 1 7.9620 3.6321 0.7165 40 1 7.8189 3.6913 -1.0567 41 1 7.5282 6.3150 -0.0534 42 1 9.9309 3.6360 -0.3238 43 1 12.3617 3.9637 -0.5196 44 1 11.8233 8.1938 -0.3368 45 1 9.0604 12.4070 0.4468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819460191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = -213.996449 kcal Electronic energy + Delta-G solvation = -28794.873218 eV Core-core repulsion = 24305.619315 eV Total energy + Delta-G solvation = -4489.253903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.66345 -41.54976 -41.02062 -39.31143 -38.21176 -37.69825 -35.65713 -34.42538 -34.06627 -32.58565 -31.08100 -30.88553 -28.53067 -27.21484 -25.79625 -24.07944 -23.35543 -22.70739 -22.36245 -21.59875 -19.99119 -19.48059 -18.78905 -17.99801 -17.87838 -17.53347 -17.31141 -17.07451 -16.96789 -16.63365 -16.49087 -15.80399 -15.66299 -15.49157 -15.38854 -15.27550 -14.87695 -14.58834 -14.45253 -14.12985 -13.94855 -13.76751 -13.69692 -13.55767 -13.30778 -13.03082 -12.92543 -12.87773 -12.50535 -12.41983 -12.19038 -12.11929 -12.03843 -11.74906 -11.57074 -11.54541 -11.53096 -10.99800 -10.89806 -10.73672 -9.50313 -8.47669 -8.06526 -6.17327 0.44956 0.56552 1.16329 1.34173 1.39004 1.53941 1.67469 2.29250 2.52400 2.72975 2.95699 3.09234 3.51858 3.58443 3.62744 3.68368 3.97989 3.98685 4.04138 4.06619 4.18715 4.25499 4.26531 4.33512 4.35227 4.47582 4.63372 4.68046 4.76191 4.79689 4.86515 4.90836 5.01827 5.10858 5.16049 5.21327 5.23489 5.34545 5.42273 5.48080 5.61003 5.87520 6.05830 6.51469 6.70969 6.77639 6.85817 6.90118 7.56929 8.64171 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.002411 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.767312 B =11611.132630 C =13935.119574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.107 4.107 7 C -0.126 4.126 8 C 0.105 3.895 9 H 0.105 0.895 10 O -0.572 6.572 11 C 0.094 3.906 12 N -0.742 5.742 13 C 0.163 3.837 14 C -0.133 4.133 15 C -0.155 4.155 16 C 0.059 3.941 17 F -0.158 7.158 18 C -0.239 4.239 19 C 0.085 3.915 20 O -0.232 6.232 21 C -0.393 4.393 22 H 0.073 0.927 23 C 0.007 3.993 24 N -0.926 5.926 25 Si 0.976 3.024 26 H -0.268 1.268 27 H -0.273 1.273 28 H -0.253 1.253 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.388 0.612 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.399 0.601 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.111 0.889 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.849 -24.700 -0.325 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.144 4.144 7 C -0.164 4.164 8 C 0.046 3.954 9 H 0.123 0.877 10 O -0.379 6.379 11 C -0.030 4.030 12 N -0.374 5.374 13 C 0.060 3.940 14 C -0.157 4.157 15 C -0.174 4.174 16 C 0.038 3.962 17 F -0.137 7.137 18 C -0.260 4.260 19 C 0.034 3.966 20 O -0.139 6.139 21 C -0.470 4.470 22 H 0.090 0.910 23 C -0.191 4.191 24 N -0.567 5.567 25 Si 0.798 3.202 26 H -0.193 1.193 27 H -0.198 1.198 28 H -0.177 1.177 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.238 0.762 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.234 0.766 42 H 0.186 0.814 43 H 0.176 0.824 44 H 0.129 0.871 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.226 -24.568 -0.710 30.013 hybrid contribution 0.504 0.681 0.415 0.943 sum -16.722 -23.887 -0.295 29.160 Atomic orbital electron populations 1.21832 0.90738 1.04298 1.03660 1.23254 0.96929 0.79368 1.02503 1.86529 1.24564 1.33593 1.83659 1.24284 0.80436 0.93449 0.71037 1.90663 1.60967 1.44467 1.46975 1.21401 0.95876 0.89392 1.07760 1.21947 0.92977 0.96289 1.05194 1.22069 0.91917 0.93113 0.88318 0.87735 1.86617 1.79607 1.55305 1.16369 1.22183 0.94188 0.83515 1.03069 1.44417 1.02174 1.08330 1.82478 1.17319 0.85908 0.89443 1.01314 1.20443 0.91335 0.97499 1.06393 1.20872 0.96161 0.94514 1.05899 1.17402 0.76332 0.94459 1.08043 1.91382 1.31383 1.96554 1.94365 1.20912 0.93703 0.98976 1.12400 1.18769 0.88957 0.87318 1.01598 1.83431 1.33718 1.13055 1.83722 1.20590 0.93783 0.81722 1.50876 0.90962 1.25315 1.05187 0.93081 0.95501 1.69757 1.38675 0.99030 1.49246 0.85138 0.77244 0.78409 0.79411 1.19258 1.19830 1.17697 0.88337 0.91364 0.91343 0.91340 0.91381 0.86045 0.86024 0.89414 0.89989 0.76198 0.90601 0.90104 0.76636 0.81373 0.82365 0.87076 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 71.98 0.74 -0.34 16 2 C 0.05 0.65 6.19 71.98 0.45 1.10 16 3 O -0.37 -5.86 10.22 -51.42 -0.53 -6.39 16 4 C 0.46 7.73 7.96 71.24 0.57 8.29 16 5 O -0.54 -11.97 15.73 21.97 0.35 -11.62 16 6 C -0.11 -1.24 5.71 29.85 0.17 -1.07 16 7 C -0.13 -1.47 4.18 30.60 0.13 -1.34 16 8 C 0.11 1.58 3.05 30.59 0.09 1.67 16 9 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 10 O -0.57 -10.28 12.62 -148.98 -1.88 -12.16 16 11 C 0.09 1.69 4.58 86.38 0.40 2.08 16 12 N -0.74 -21.60 5.62 -338.86 -1.91 -23.51 16 13 C 0.16 5.72 6.67 38.26 0.26 5.98 16 14 C -0.13 -3.75 9.31 22.38 0.21 -3.55 16 15 C -0.15 -4.72 10.02 22.33 0.22 -4.50 16 16 C 0.06 2.30 7.29 22.37 0.16 2.47 16 17 F -0.16 -6.20 17.26 44.97 0.78 -5.43 16 18 C -0.24 -11.06 9.14 22.41 0.20 -10.86 16 19 C 0.09 3.88 6.66 22.69 0.15 4.03 16 20 O -0.23 -12.02 7.83 -22.97 -0.18 -12.20 16 21 C -0.39 -23.06 9.95 67.91 0.68 -22.38 16 22 H 0.07 4.57 5.44 -2.91 -0.02 4.55 16 23 C 0.01 0.41 5.49 84.82 0.47 0.88 16 24 N -0.93 -55.74 13.96 21.61 0.30 -55.44 16 25 Si 0.98 44.62 28.62 68.60 1.96 46.58 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.25 -11.12 7.11 99.48 0.71 -10.41 16 29 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 34 H 0.12 1.27 7.82 -2.39 -0.02 1.25 16 35 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.03 8.10 -2.39 -0.02 1.01 16 37 H 0.08 0.95 8.10 -2.38 -0.02 0.93 16 38 H 0.39 4.68 9.05 -74.06 -0.67 4.02 16 39 H 0.08 1.15 7.94 -2.39 -0.02 1.13 16 40 H 0.08 1.24 7.96 -2.39 -0.02 1.22 16 41 H 0.40 13.37 7.72 -92.71 -0.72 12.65 16 42 H 0.17 3.25 6.73 -2.91 -0.02 3.23 16 43 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 44 H 0.11 5.80 5.64 -2.91 -0.02 5.78 16 45 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -73.86 387.53 3.44 -70.41 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.34 Total: 27.28 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 4.89 Total: -17.53 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -1.60 Total: -78.95 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -2.24 Total: -42.37 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.78 Total: -5.43 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.96 Total: 46.58 kcal Total: -73.86 3.44 -70.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819460191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.583 kcal (2) G-P(sol) polarization free energy of solvation -73.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds