Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99862 * 2 1 4 4 C 1.50703 * 109.46899 * 66.04659 * 3 2 1 5 5 H 1.07997 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99831 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99834 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99986 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47266 * 90.00159 * 8 6 4 10 10 H 1.48503 * 109.47437 * 210.00280 * 8 6 4 11 11 H 1.48501 * 109.47303 * 330.00208 * 8 6 4 12 12 C 1.46897 * 110.99831 * 236.04365 * 2 1 3 13 13 C 1.50692 * 109.47473 * 293.95603 * 12 2 1 14 14 N 1.30385 * 126.18964 * 89.98083 * 13 12 2 15 15 N 1.28666 * 109.52687 * 179.97438 * 14 13 12 16 16 C 1.31231 * 109.24653 * 359.97438 * 15 14 13 17 17 C 1.47867 * 126.37708 * 179.97438 * 16 15 14 18 18 C 1.39634 * 120.08983 * 180.02562 * 17 16 15 19 19 C 1.38012 * 120.09338 * 180.02562 * 18 17 16 20 20 C 1.38159 * 120.27191 * 0.02562 * 19 18 17 21 21 C 1.39375 * 120.16946 * 359.97438 * 20 19 18 22 22 C 1.48478 * 120.04683 * 179.72237 * 21 20 19 23 23 N 1.34044 * 126.67319 * 179.68904 * 22 21 20 24 24 N 1.28987 * 107.26798 * 179.84173 * 23 22 21 25 25 N 1.28722 * 108.94338 * 0.43093 * 24 23 22 26 26 H 0.97001 * 125.34321 * 179.75293 * 25 24 23 27 27 N 1.28875 * 109.31793 * 359.72643 * 25 24 23 28 28 C 1.39065 * 119.90678 * 0.02562 * 21 20 19 29 29 O 1.34415 * 126.18763 * 270.24102 * 13 12 2 30 30 H 1.08996 * 109.47129 * 183.95215 * 1 2 3 31 31 H 1.08996 * 109.47287 * 303.95346 * 1 2 3 32 32 H 1.09007 * 109.46724 * 63.95450 * 1 2 3 33 33 H 1.09003 * 109.46699 * 186.03860 * 3 2 1 34 34 H 1.08993 * 109.47133 * 306.04381 * 3 2 1 35 35 H 0.97004 * 119.99880 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46733 * 173.95103 * 12 2 1 37 37 H 1.08995 * 109.47247 * 53.96251 * 12 2 1 38 38 H 1.08001 * 119.95176 * 0.02562 * 18 17 16 39 39 H 1.08005 * 119.86329 * 179.97438 * 19 18 17 40 40 H 1.08003 * 119.91627 * 180.02562 * 20 19 18 41 41 H 1.08006 * 120.13758 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7127 4.0015 0.6155 8 14 1.5826 4.1869 3.1381 9 1 2.6586 3.9499 4.1338 10 1 1.4311 5.6466 2.9110 11 1 0.3042 3.6302 3.6491 12 6 1.9954 -0.7660 -1.1375 13 6 1.6369 -2.2204 -0.9728 14 7 0.5558 -2.8014 -1.4129 15 7 0.5776 -4.0479 -1.0949 16 6 1.6826 -4.3070 -0.4362 17 6 2.0922 -5.6197 0.1075 18 6 3.3030 -5.7473 0.7914 19 6 3.6856 -6.9725 1.2984 20 6 2.8748 -8.0789 1.1325 21 6 1.6640 -7.9642 0.4518 22 6 0.7978 -9.1562 0.2696 23 7 -0.3882 -9.1963 -0.3539 24 7 -0.8099 -10.4140 -0.2966 25 7 0.0535 -11.1257 0.3396 26 1 -0.0273 -12.0749 0.5228 27 7 1.0426 -10.3797 0.6947 28 6 1.2714 -6.7331 -0.0621 29 8 2.3715 -3.1523 -0.3415 30 1 -0.3633 -1.0252 0.0708 31 1 -0.3633 0.5739 0.8524 32 1 -0.3633 0.4513 -0.9234 33 1 3.0798 1.3444 -0.1081 34 1 1.5612 1.9273 -0.8309 35 1 2.9873 4.9177 0.7775 36 1 3.0797 -0.6611 -1.1756 37 1 1.5612 -0.3872 -2.0627 38 1 3.9409 -4.8859 0.9237 39 1 4.6230 -7.0671 1.8264 40 1 3.1797 -9.0348 1.5320 41 1 0.3341 -6.6401 -0.5906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821597815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = 202.887780 kcal Electronic energy + Delta-G solvation = -27292.970664 eV Core-core repulsion = 23213.608602 eV Total energy + Delta-G solvation = -4079.362062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.85607 -43.99562 -39.64574 -36.88060 -36.02005 -34.86343 -34.19159 -33.04896 -32.48678 -31.12083 -30.35016 -27.66687 -27.04071 -25.34157 -25.01952 -24.50158 -23.99301 -22.49687 -21.90707 -21.45958 -20.51927 -19.63335 -17.97246 -17.53895 -17.23394 -16.69300 -16.40969 -16.25277 -15.43063 -15.00009 -14.94677 -14.49525 -14.36821 -14.29082 -14.01840 -13.95548 -13.55726 -12.77516 -12.64370 -12.27627 -12.23446 -12.02171 -11.96223 -11.79658 -11.73860 -11.65672 -11.49774 -11.47683 -11.26658 -10.98183 -10.85220 -10.70383 -10.57380 -10.26097 -9.97902 -9.36813 -9.24093 -8.72972 -8.50484 -7.53565 -6.10299 -4.11959 0.12094 0.46272 0.80536 1.52517 1.80999 1.95398 2.24179 2.55091 3.23220 3.29360 3.35499 3.38917 3.39430 3.68917 3.81577 4.32818 4.40061 4.54224 4.58764 4.63930 4.85642 4.91131 4.96196 5.08540 5.19274 5.25316 5.26350 5.43763 5.46478 5.58705 5.71684 5.84885 5.88385 5.91233 5.97828 6.01807 6.10242 6.28075 6.29745 6.71617 7.07325 7.16750 7.64438 7.74182 7.87041 8.00820 8.36111 8.40298 8.94480 9.52447 11.00506 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.001892 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.890469 B =14796.929243 C =15082.679171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.537 5.537 3 C 0.194 3.806 4 C -0.510 4.510 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.139 3.861 13 C 0.206 3.794 14 N -0.289 5.289 15 N -0.268 5.268 16 C 0.185 3.815 17 C -0.012 4.012 18 C -0.063 4.063 19 C -0.120 4.120 20 C -0.061 4.061 21 C -0.022 4.022 22 C 0.221 3.779 23 N -0.262 5.262 24 N -0.046 5.046 25 N -0.227 5.227 26 H 0.476 0.524 27 N -0.293 5.293 28 C -0.029 4.029 29 O -0.210 6.210 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.022 0.978 33 H 0.035 0.965 34 H 0.000 1.000 35 H 0.263 0.737 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.689 -29.813 -0.602 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.263 5.263 3 C 0.070 3.930 4 C -0.549 4.549 5 H 0.083 0.917 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.009 3.991 13 C -0.004 4.004 14 N -0.137 5.137 15 N -0.116 5.116 16 C -0.023 4.023 17 C -0.014 4.014 18 C -0.084 4.084 19 C -0.138 4.138 20 C -0.081 4.081 21 C -0.025 4.025 22 C -0.058 4.058 23 N -0.135 5.135 24 N -0.041 5.041 25 N -0.073 5.073 26 H 0.330 0.670 27 N -0.145 5.145 28 C -0.050 4.050 29 O -0.088 6.088 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.017 0.983 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.221 -30.299 -1.018 30.317 hybrid contribution 0.948 0.719 0.962 1.530 sum 1.169 -29.580 -0.056 29.603 Atomic orbital electron populations 1.22323 0.87600 1.00318 1.01339 1.62188 1.08224 1.18489 1.37409 1.19816 0.95630 0.80082 0.97442 1.21095 1.35255 0.97004 1.01516 0.91716 1.24973 0.95170 0.97232 0.97118 1.69945 1.38108 1.11571 1.33988 0.86456 0.78916 0.78423 0.83378 1.20582 1.21248 1.19816 1.20637 1.02482 0.80002 0.95970 1.28391 0.86694 0.94715 0.90576 1.74462 1.18519 0.99485 1.21216 1.74676 1.16522 1.07884 1.12519 1.25143 0.89434 0.87358 1.00373 1.16991 0.96301 0.86264 1.01862 1.21531 0.94299 0.98871 0.93664 1.21029 1.00567 0.91504 1.00652 1.21363 0.91887 0.99798 0.95095 1.16967 0.93890 0.88211 1.03421 1.23539 0.92971 0.91675 0.97650 1.76177 1.09472 1.09334 1.18482 1.78968 1.16174 0.97918 1.11062 1.47743 1.10513 1.14190 1.34889 0.66960 1.74891 1.13568 1.03299 1.22719 1.21146 0.99360 0.89135 0.95360 1.84851 1.46535 1.17502 1.59911 0.93352 0.90141 0.95972 0.94690 0.98255 0.92782 0.87732 0.90252 0.84068 0.84018 0.84260 0.82885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.18 60.07 0.55 1.21 16 2 N -0.54 -11.32 4.74 -245.83 -1.17 -12.49 16 3 C 0.19 4.80 4.72 -4.97 -0.02 4.78 16 4 C -0.51 -13.90 8.46 -34.44 -0.29 -14.19 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -25.78 13.29 55.43 0.74 -25.04 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.14 2.40 5.59 -4.98 -0.03 2.37 16 13 C 0.21 3.56 7.10 -12.90 -0.09 3.47 16 14 N -0.29 -5.25 11.50 32.58 0.37 -4.87 16 15 N -0.27 -4.59 11.91 32.07 0.38 -4.21 16 16 C 0.19 2.80 7.99 -13.87 -0.11 2.69 16 17 C -0.01 -0.14 5.87 -105.02 -0.62 -0.76 16 18 C -0.06 -0.57 9.72 -39.14 -0.38 -0.96 16 19 C -0.12 -0.81 10.02 -39.69 -0.40 -1.21 16 20 C -0.06 -0.44 9.69 -39.19 -0.38 -0.82 16 21 C -0.02 -0.20 5.87 -104.95 -0.62 -0.82 16 22 C 0.22 2.17 7.93 -156.30 -1.24 0.93 16 23 N -0.26 -2.91 12.23 32.16 0.39 -2.52 16 24 N -0.05 -0.41 13.47 60.35 0.81 0.40 16 25 N -0.23 -1.28 7.90 60.35 0.48 -0.81 16 26 H 0.48 0.30 8.96 -340.37 -3.05 -2.75 16 27 N -0.29 -2.27 12.07 32.17 0.39 -1.88 16 28 C -0.03 -0.31 9.35 -38.86 -0.36 -0.68 16 29 O -0.21 -3.40 10.66 4.04 0.04 -3.35 16 30 H 0.05 0.93 6.73 -51.93 -0.35 0.58 16 31 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 32 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.04 0.90 7.93 -51.93 -0.41 0.49 16 34 H 0.00 -0.01 8.12 -51.93 -0.42 -0.43 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.10 1.64 7.93 -51.93 -0.41 1.22 16 37 H 0.08 1.28 8.12 -51.93 -0.42 0.86 16 38 H 0.14 1.19 7.93 -52.49 -0.42 0.77 16 39 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.14 0.74 7.87 -52.48 -0.41 0.33 16 41 H 0.15 1.81 7.69 -52.48 -0.40 1.41 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -33.60 365.25 -8.17 -41.76 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -7.01 Total: -6.21 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -4.08 Total: -2.50 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 2.40 Total: -51.42 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.60 -8.17 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.649 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds