Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99862 * 2 1 4 4 C 1.50703 * 109.46899 * 66.04659 * 3 2 1 5 5 H 1.07997 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99831 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99834 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99986 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47266 * 90.00159 * 8 6 4 10 10 H 1.48503 * 109.47437 * 210.00280 * 8 6 4 11 11 H 1.48501 * 109.47303 * 330.00208 * 8 6 4 12 12 C 1.46897 * 110.99831 * 236.04365 * 2 1 3 13 13 C 1.50692 * 109.47473 * 293.95603 * 12 2 1 14 14 N 1.30385 * 126.18964 * 89.98083 * 13 12 2 15 15 N 1.28666 * 109.52687 * 179.97438 * 14 13 12 16 16 C 1.31231 * 109.24653 * 359.97438 * 15 14 13 17 17 C 1.47867 * 126.37708 * 179.97438 * 16 15 14 18 18 C 1.39634 * 120.08983 * 180.02562 * 17 16 15 19 19 C 1.38012 * 120.09338 * 180.02562 * 18 17 16 20 20 C 1.38159 * 120.27191 * 0.02562 * 19 18 17 21 21 C 1.39375 * 120.16946 * 359.97438 * 20 19 18 22 22 C 1.48478 * 120.04683 * 179.72237 * 21 20 19 23 23 N 1.34044 * 126.67319 * 179.68904 * 22 21 20 24 24 N 1.28987 * 107.26798 * 179.84173 * 23 22 21 25 25 N 1.28722 * 108.94338 * 0.43093 * 24 23 22 26 26 H 0.97001 * 125.34321 * 179.75293 * 25 24 23 27 27 N 1.28875 * 109.31793 * 359.72643 * 25 24 23 28 28 C 1.39065 * 119.90678 * 0.02562 * 21 20 19 29 29 O 1.34415 * 126.18763 * 270.24102 * 13 12 2 30 30 H 1.08996 * 109.47129 * 183.95215 * 1 2 3 31 31 H 1.08996 * 109.47287 * 303.95346 * 1 2 3 32 32 H 1.09007 * 109.46724 * 63.95450 * 1 2 3 33 33 H 1.09003 * 109.46699 * 186.03860 * 3 2 1 34 34 H 1.08993 * 109.47133 * 306.04381 * 3 2 1 35 35 H 0.97004 * 119.99880 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46733 * 173.95103 * 12 2 1 37 37 H 1.08995 * 109.47247 * 53.96251 * 12 2 1 38 38 H 1.08001 * 119.95176 * 0.02562 * 18 17 16 39 39 H 1.08005 * 119.86329 * 179.97438 * 19 18 17 40 40 H 1.08003 * 119.91627 * 180.02562 * 20 19 18 41 41 H 1.08006 * 120.13758 * 179.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3491 1.5290 7 7 2.7127 4.0015 0.6155 8 14 1.5826 4.1869 3.1381 9 1 2.6586 3.9499 4.1338 10 1 1.4311 5.6466 2.9110 11 1 0.3042 3.6302 3.6491 12 6 1.9954 -0.7660 -1.1375 13 6 1.6369 -2.2204 -0.9728 14 7 0.5558 -2.8014 -1.4129 15 7 0.5776 -4.0479 -1.0949 16 6 1.6826 -4.3070 -0.4362 17 6 2.0922 -5.6197 0.1075 18 6 3.3030 -5.7473 0.7914 19 6 3.6856 -6.9725 1.2984 20 6 2.8748 -8.0789 1.1325 21 6 1.6640 -7.9642 0.4518 22 6 0.7978 -9.1562 0.2696 23 7 -0.3882 -9.1963 -0.3539 24 7 -0.8099 -10.4140 -0.2966 25 7 0.0535 -11.1257 0.3396 26 1 -0.0273 -12.0749 0.5228 27 7 1.0426 -10.3797 0.6947 28 6 1.2714 -6.7331 -0.0621 29 8 2.3715 -3.1523 -0.3415 30 1 -0.3633 -1.0252 0.0708 31 1 -0.3633 0.5739 0.8524 32 1 -0.3633 0.4513 -0.9234 33 1 3.0798 1.3444 -0.1081 34 1 1.5612 1.9273 -0.8309 35 1 2.9873 4.9177 0.7775 36 1 3.0797 -0.6611 -1.1756 37 1 1.5612 -0.3872 -2.0627 38 1 3.9409 -4.8859 0.9237 39 1 4.6230 -7.0671 1.8264 40 1 3.1797 -9.0348 1.5320 41 1 0.3341 -6.6401 -0.5906 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821597815.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 175.444810 kcal Electronic energy + Delta-G solvation = -27294.160681 eV Core-core repulsion = 23213.608602 eV Total energy + Delta-G solvation = -4080.552079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.50134 -45.26997 -40.36670 -38.54676 -37.30786 -35.54167 -35.00616 -34.73138 -33.69161 -31.86367 -31.52236 -29.32949 -28.65923 -26.37227 -25.88686 -25.69972 -25.09012 -23.79497 -22.88128 -22.38120 -22.16309 -20.25312 -18.91137 -18.57765 -18.49077 -18.17382 -17.62714 -17.04767 -16.83209 -16.31414 -16.17401 -15.92034 -15.69607 -15.53248 -15.06669 -14.65910 -14.36387 -14.30846 -13.86284 -13.59002 -13.55885 -13.41546 -13.09829 -13.04100 -12.85712 -12.75455 -12.62828 -12.49071 -12.47265 -12.36625 -12.20727 -12.18068 -12.04317 -11.90818 -11.41148 -11.21603 -10.60211 -9.95140 -9.68337 -9.25411 -8.20242 -6.29100 -0.70538 -0.32099 0.14409 0.48321 1.01239 1.13421 1.40270 1.41397 1.44233 1.44288 1.55523 2.40980 2.52673 2.62161 2.65806 3.10163 3.12337 3.15339 3.36783 3.70003 3.84517 3.90926 3.99968 4.13079 4.20643 4.27900 4.33421 4.36699 4.44393 4.45267 4.51670 4.65127 4.66686 4.86232 5.01849 5.14900 5.15229 5.22122 5.26218 5.28920 5.60063 5.61839 5.65687 5.96810 6.11701 6.42656 6.83819 7.08236 7.12085 7.39686 8.90460 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.001892 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.890469 B =14796.929243 C =15082.679171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.546 5.546 3 C 0.209 3.791 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.966 3.034 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.143 3.857 13 C 0.196 3.804 14 N -0.304 5.304 15 N -0.302 5.302 16 C 0.205 3.795 17 C -0.041 4.041 18 C -0.060 4.060 19 C -0.104 4.104 20 C -0.042 4.042 21 C -0.028 4.028 22 C 0.209 3.791 23 N -0.299 5.299 24 N -0.057 5.057 25 N -0.197 5.197 26 H 0.496 0.504 27 N -0.282 5.282 28 C -0.035 4.035 29 O -0.212 6.212 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.026 0.974 33 H 0.023 0.977 34 H -0.020 1.020 35 H 0.265 0.735 36 H 0.120 0.880 37 H 0.091 0.909 38 H 0.149 0.851 39 H 0.181 0.819 40 H 0.167 0.833 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -32.100 1.155 32.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.272 5.272 3 C 0.084 3.916 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.014 3.986 13 C -0.015 4.015 14 N -0.152 5.152 15 N -0.148 5.148 16 C -0.003 4.003 17 C -0.043 4.043 18 C -0.081 4.081 19 C -0.122 4.122 20 C -0.063 4.063 21 C -0.032 4.032 22 C -0.071 4.071 23 N -0.171 5.171 24 N -0.052 5.052 25 N -0.048 5.048 26 H 0.355 0.645 27 N -0.135 5.135 28 C -0.056 4.056 29 O -0.091 6.091 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.041 0.959 34 H -0.002 1.002 35 H 0.074 0.926 36 H 0.138 0.862 37 H 0.109 0.891 38 H 0.167 0.833 39 H 0.198 0.802 40 H 0.184 0.816 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.552 -32.632 0.727 32.677 hybrid contribution 0.572 1.138 0.446 1.350 sum 2.124 -31.494 1.174 31.587 Atomic orbital electron populations 1.22204 0.87161 1.00429 1.00853 1.62014 1.08674 1.16719 1.39809 1.19473 0.94673 0.81681 0.95784 1.21396 1.35193 0.97557 1.02343 0.92194 1.25799 0.95007 0.97894 1.00449 1.70048 1.39015 1.11966 1.35813 0.85432 0.78823 0.77331 0.79317 1.19836 1.20756 1.19316 1.20628 1.03348 0.79617 0.94998 1.28155 0.86980 0.94740 0.91601 1.74386 1.18996 1.00172 1.21626 1.74641 1.18015 1.07568 1.14625 1.25848 0.88275 0.87982 0.98185 1.17116 0.98131 0.84744 1.04282 1.21733 0.93114 1.00349 0.92866 1.21431 1.01491 0.89952 0.99277 1.21722 0.90390 1.01116 0.93029 1.17065 0.94837 0.87438 1.03826 1.23645 0.92917 0.92411 0.98164 1.76165 1.10601 1.10441 1.19915 1.78912 1.16751 0.97724 1.11835 1.47824 1.09214 1.14949 1.32822 0.64461 1.74846 1.13749 1.02637 1.22290 1.20999 0.98835 0.89906 0.95904 1.84842 1.46559 1.17732 1.59966 0.92664 0.91626 0.95543 0.95931 1.00246 0.92568 0.86189 0.89102 0.83344 0.80162 0.81559 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.18 127.69 1.17 2.88 16 2 N -0.55 -23.30 4.74 -931.67 -4.42 -27.72 16 3 C 0.21 10.53 4.72 85.56 0.40 10.94 16 4 C -0.53 -28.99 8.46 25.60 0.22 -28.77 16 5 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 6 C 0.01 0.40 5.46 84.66 0.46 0.86 16 7 N -0.93 -53.76 13.29 21.45 0.28 -53.47 16 8 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 12 C 0.14 4.98 5.59 85.55 0.48 5.46 16 13 C 0.20 6.85 7.10 88.32 0.63 7.48 16 14 N -0.30 -11.32 11.50 -165.33 -1.90 -13.22 16 15 N -0.30 -10.69 11.91 -166.30 -1.98 -12.67 16 16 C 0.21 6.29 7.99 87.33 0.70 6.98 16 17 C -0.04 -0.93 5.87 -20.12 -0.12 -1.05 16 18 C -0.06 -0.97 9.72 22.55 0.22 -0.75 16 19 C -0.10 -1.00 10.02 22.20 0.22 -0.78 16 20 C -0.04 -0.46 9.69 22.52 0.22 -0.24 16 21 C -0.03 -0.49 5.87 -20.07 -0.12 -0.61 16 22 C 0.21 3.84 7.93 137.39 1.09 4.93 16 23 N -0.30 -6.62 12.23 -52.17 -0.64 -7.26 16 24 N -0.06 -0.97 13.47 37.02 0.50 -0.47 16 25 N -0.20 -1.83 7.90 37.02 0.29 -1.54 16 26 H 0.50 -0.59 8.96 -347.54 -3.12 -3.71 16 27 N -0.28 -3.73 12.07 -52.12 -0.63 -4.36 16 28 C -0.03 -0.76 9.35 22.74 0.21 -0.55 16 29 O -0.21 -6.89 10.66 -8.46 -0.09 -6.98 16 30 H 0.05 2.16 6.73 -2.39 -0.02 2.14 16 31 H 0.06 2.83 6.76 -2.39 -0.02 2.82 16 32 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.02 1.18 7.93 -2.39 -0.02 1.17 16 34 H -0.02 -1.08 8.12 -2.39 -0.02 -1.10 16 35 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 36 H 0.12 3.74 7.93 -2.38 -0.02 3.72 16 37 H 0.09 2.95 8.12 -2.39 -0.02 2.93 16 38 H 0.15 2.16 7.93 -2.91 -0.02 2.14 16 39 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.17 0.97 7.87 -2.91 -0.02 0.95 16 41 H 0.13 3.41 7.69 -2.91 -0.02 3.39 16 Total: -1.00 -73.75 365.25 -2.78 -76.53 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -2.01 Total: -1.11 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 5.78 Total: 6.78 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -8.49 Total: -120.72 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.09 Total: -6.98 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -73.75 -2.78 -76.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821597815.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.974 kcal (2) G-P(sol) polarization free energy of solvation -73.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds