Wall clock time and date at job start Sat Apr 11 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00300 * 2 1 4 4 C 1.53001 * 109.47155 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47031 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47285 * 179.97438 * 5 4 3 7 7 C 1.42900 * 114.00421 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47381 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47251 * 179.97438 * 8 7 6 10 10 O 1.21296 * 119.99814 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00087 * 179.97438 * 9 8 7 12 12 C 1.40093 * 120.00112 * 185.61151 * 11 9 8 13 13 C 1.38712 * 120.07411 * 34.07260 * 12 11 9 14 14 C 1.38188 * 120.02011 * 179.97438 * 13 12 11 15 15 C 1.38549 * 120.17548 * 0.02562 * 14 13 12 16 16 F 1.35096 * 119.92178 * 179.97438 * 15 14 13 17 17 C 1.38343 * 120.15584 * 0.02562 * 15 14 13 18 18 C 1.38735 * 119.97575 * 359.97438 * 17 15 14 19 19 O 1.35777 * 120.08743 * 180.29716 * 18 17 15 20 20 C 1.34800 * 117.00080 * 354.19171 * 19 18 17 21 21 H 1.08007 * 119.99887 * 354.52311 * 20 19 18 22 22 C 1.38630 * 120.00177 * 174.51703 * 20 19 18 23 23 N 1.31568 * 120.00297 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00299 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47160 * 90.00103 * 24 22 20 26 26 H 1.48497 * 109.47720 * 210.00149 * 24 22 20 27 27 H 1.48500 * 109.47146 * 330.00665 * 24 22 20 28 28 H 1.08995 * 109.47766 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46712 * 299.99923 * 1 2 3 30 30 H 1.08998 * 109.47600 * 59.99131 * 1 2 3 31 31 H 1.08999 * 109.46882 * 60.00382 * 3 2 1 32 32 H 1.08998 * 109.46969 * 300.00573 * 3 2 1 33 33 H 1.08999 * 109.47502 * 60.00042 * 4 3 2 34 34 H 1.09011 * 109.46923 * 300.00095 * 4 3 2 35 35 H 1.09001 * 109.47814 * 59.99843 * 5 4 3 36 36 H 1.09000 * 109.47560 * 299.99483 * 5 4 3 37 37 H 1.09007 * 109.47060 * 59.99604 * 7 6 5 38 38 H 1.09006 * 109.46904 * 300.00062 * 7 6 5 39 39 H 1.09007 * 109.47069 * 59.99950 * 8 7 6 40 40 H 1.08997 * 109.47541 * 300.00298 * 8 7 6 41 41 H 0.97001 * 120.00245 * 5.61242 * 11 9 8 42 42 H 1.07997 * 119.98691 * 359.97298 * 13 12 11 43 43 H 1.07996 * 119.90792 * 180.02562 * 14 13 12 44 44 H 1.08001 * 120.01082 * 180.02562 * 17 15 14 45 45 H 0.97003 * 120.00251 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2649 3.7248 0.0000 8 6 7.7758 3.4839 0.0006 9 6 8.4956 4.8079 0.0000 10 8 7.8624 5.8424 -0.0004 11 7 9.8429 4.8424 0.0009 12 6 10.5121 6.0675 0.1190 13 6 9.9719 7.0828 0.8945 14 6 10.6332 8.2906 1.0106 15 6 11.8362 8.4918 0.3534 16 9 12.4781 9.6748 0.4701 17 6 12.3811 7.4846 -0.4228 18 6 11.7226 6.2695 -0.5438 19 8 12.2583 5.2773 -1.3001 20 6 13.3689 5.5756 -2.0035 21 1 13.7418 6.5892 -2.0198 22 6 14.0325 4.5816 -2.7058 23 7 13.5781 3.3470 -2.6863 24 14 15.5719 4.9948 -3.6800 25 1 16.7656 4.8329 -2.8116 26 1 15.6803 4.0813 -4.8457 27 1 15.4937 6.3989 -4.1570 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8568 0.6438 -0.8908 34 1 3.8574 0.6434 0.8892 35 1 3.8366 3.1227 0.8904 36 1 3.8360 3.1237 -0.8895 37 1 5.9870 4.2895 0.8900 38 1 5.9870 4.2895 -0.8900 39 1 8.0540 2.9190 -0.8892 40 1 8.0534 2.9194 0.8908 41 1 10.3493 4.0191 -0.0801 42 1 9.0341 6.9293 1.4076 43 1 10.2111 9.0797 1.6152 44 1 13.3192 7.6439 -0.9337 45 1 14.0422 2.6515 -3.1781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830173813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:25 Heat of formation + Delta-G solvation = -182.606645 kcal Electronic energy + Delta-G solvation = -28218.396921 eV Core-core repulsion = 23730.504182 eV Total energy + Delta-G solvation = -4487.892739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.29599 -40.19661 -38.85473 -38.50390 -37.82327 -36.38516 -34.13112 -33.43194 -32.44844 -31.36709 -29.46847 -28.34646 -27.37130 -25.56793 -25.18409 -23.85680 -22.34375 -21.95176 -21.45542 -19.91224 -18.39017 -17.91447 -17.45920 -16.93065 -16.77484 -16.68111 -16.19392 -16.02292 -15.45525 -15.28624 -15.10621 -14.97417 -14.87374 -14.42537 -14.31824 -13.94595 -13.78953 -13.66395 -13.50921 -13.17045 -12.84320 -12.38083 -12.27078 -12.20467 -11.92194 -11.82788 -11.67180 -11.56551 -11.40722 -11.16854 -11.15336 -11.01597 -10.76124 -10.55996 -10.09503 -9.87165 -9.81485 -9.73968 -9.44135 -8.99602 -7.94524 -7.17161 -6.63736 -4.21611 1.73624 2.06826 2.85667 2.90893 3.04958 3.06271 3.10929 3.41206 3.82125 4.00150 4.28336 4.55484 4.71309 4.75939 4.81267 4.85956 4.90087 4.92103 4.95859 4.98835 5.05488 5.06520 5.06928 5.17160 5.24613 5.32275 5.45610 5.55332 5.69373 5.70430 5.73432 5.80726 5.85718 5.97666 6.17849 6.45941 6.70683 6.71810 6.86532 6.87391 6.99204 7.01167 7.14367 7.57637 7.78480 7.84530 8.45390 8.81990 9.42088 10.53135 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.001964 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.980071 B =14250.380885 C =16392.873192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.064 3.936 4 C -0.120 4.120 5 C 0.069 3.931 6 O -0.389 6.389 7 C 0.081 3.919 8 C -0.139 4.139 9 C 0.515 3.485 10 O -0.540 6.540 11 N -0.648 5.648 12 C 0.059 3.941 13 C -0.048 4.048 14 C -0.229 4.229 15 C 0.131 3.869 16 F -0.151 7.151 17 C -0.258 4.258 18 C 0.159 3.841 19 O -0.167 6.167 20 C -0.393 4.393 21 H 0.094 0.906 22 C 0.043 3.957 23 N -0.857 5.857 24 Si 0.943 3.057 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.417 0.583 42 H 0.135 0.865 43 H 0.123 0.877 44 H 0.143 0.857 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.661 -3.264 5.807 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.012 4.012 4 C -0.157 4.157 5 C -0.008 4.008 6 O -0.308 6.308 7 C 0.004 3.996 8 C -0.179 4.179 9 C 0.302 3.698 10 O -0.418 6.418 11 N -0.292 5.292 12 C -0.035 4.035 13 C -0.069 4.069 14 C -0.250 4.250 15 C 0.112 3.888 16 F -0.130 7.130 17 C -0.279 4.279 18 C 0.103 3.897 19 O -0.069 6.069 20 C -0.469 4.469 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.491 5.491 24 Si 0.767 3.233 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.190 1.190 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.253 0.747 42 H 0.153 0.847 43 H 0.141 0.859 44 H 0.161 0.839 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.895 -3.359 5.659 19.067 hybrid contribution 0.913 0.563 -0.582 1.220 sum -16.982 -2.797 5.077 17.944 Atomic orbital electron populations 1.22755 0.80790 1.02900 1.00053 1.87874 1.19868 1.27837 1.95445 1.22377 0.93569 0.84835 1.00467 1.21372 0.92531 0.96945 1.04871 1.22253 0.81326 0.96707 1.00553 1.87793 1.17666 1.29783 1.95590 1.22118 0.90771 0.84911 1.01809 1.21435 0.94359 0.95903 1.06178 1.20384 0.82189 0.91027 0.76154 1.90687 1.66334 1.35117 1.49640 1.43151 1.05938 1.08932 1.71200 1.16833 0.93610 0.88750 1.04340 1.20449 0.99058 0.91513 0.95857 1.20444 0.96836 0.99469 1.08219 1.17450 0.91857 0.80953 0.98578 1.91413 1.81540 1.45218 1.94783 1.20875 1.04612 0.94096 1.08333 1.18824 0.91952 0.88674 0.90283 1.83930 1.40081 1.32360 1.50561 1.21347 1.02657 0.96509 1.26352 0.88815 1.25295 0.99029 0.94477 0.97392 1.70003 1.38971 1.00637 1.39495 0.85673 0.79912 0.78876 0.78840 1.19693 1.20121 1.19039 0.89497 0.94009 0.93976 0.93046 0.93016 0.90065 0.90130 0.93089 0.93029 0.92336 0.92228 0.87586 0.87787 0.74655 0.84749 0.85894 0.83906 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.57 10.70 -35.23 -0.38 -3.95 16 3 C 0.06 0.48 5.94 37.16 0.22 0.70 16 4 C -0.12 -1.02 5.95 -26.74 -0.16 -1.18 16 5 C 0.07 0.62 5.94 37.15 0.22 0.84 16 6 O -0.39 -4.56 10.34 -35.23 -0.36 -4.93 16 7 C 0.08 0.96 5.23 37.15 0.19 1.16 16 8 C -0.14 -1.71 6.07 -27.89 -0.17 -1.88 16 9 C 0.51 8.32 7.56 -10.99 -0.08 8.23 16 10 O -0.54 -10.06 13.74 5.54 0.08 -9.99 16 11 N -0.65 -11.49 5.20 -9.71 -0.05 -11.54 16 12 C 0.06 1.19 6.28 -83.45 -0.52 0.67 16 13 C -0.05 -0.91 8.65 -39.42 -0.34 -1.25 16 14 C -0.23 -4.18 10.02 -39.49 -0.40 -4.58 16 15 C 0.13 2.59 7.29 -39.43 -0.29 2.30 16 16 F -0.15 -2.85 17.26 2.25 0.04 -2.81 16 17 C -0.26 -5.57 9.11 -39.36 -0.36 -5.93 16 18 C 0.16 3.62 6.66 -38.94 -0.26 3.36 16 19 O -0.17 -4.30 9.30 0.05 0.00 -4.30 16 20 C -0.39 -10.27 9.44 30.88 0.29 -9.98 16 21 H 0.09 2.31 5.30 -52.48 -0.28 2.03 16 22 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 23 N -0.86 -23.19 13.67 55.48 0.76 -22.43 16 24 Si 0.94 19.55 29.55 -169.99 -5.02 14.52 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 26 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.42 7.03 8.55 -40.82 -0.35 6.68 16 42 H 0.13 2.37 6.48 -52.49 -0.34 2.03 16 43 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 44 H 0.14 3.08 5.71 -52.49 -0.30 2.78 16 45 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -30.51 389.91 -6.02 -36.53 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.32 Total: 8.24 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -0.63 Total: -5.22 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.71 Total: -33.98 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.66 Total: -23.16 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.51 -6.02 -36.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830173813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.079 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds