Wall clock time and date at job start Sat Apr 11 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00300 * 2 1 4 4 C 1.53001 * 109.47155 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47031 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47285 * 179.97438 * 5 4 3 7 7 C 1.42900 * 114.00421 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47381 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47251 * 179.97438 * 8 7 6 10 10 O 1.21296 * 119.99814 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00087 * 179.97438 * 9 8 7 12 12 C 1.40093 * 120.00112 * 185.61151 * 11 9 8 13 13 C 1.38712 * 120.07411 * 34.07260 * 12 11 9 14 14 C 1.38188 * 120.02011 * 179.97438 * 13 12 11 15 15 C 1.38549 * 120.17548 * 0.02562 * 14 13 12 16 16 F 1.35096 * 119.92178 * 179.97438 * 15 14 13 17 17 C 1.38343 * 120.15584 * 0.02562 * 15 14 13 18 18 C 1.38735 * 119.97575 * 359.97438 * 17 15 14 19 19 O 1.35777 * 120.08743 * 180.29716 * 18 17 15 20 20 C 1.34800 * 117.00080 * 354.19171 * 19 18 17 21 21 H 1.08007 * 119.99887 * 354.52311 * 20 19 18 22 22 C 1.38630 * 120.00177 * 174.51703 * 20 19 18 23 23 N 1.31568 * 120.00297 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00299 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47160 * 90.00103 * 24 22 20 26 26 H 1.48497 * 109.47720 * 210.00149 * 24 22 20 27 27 H 1.48500 * 109.47146 * 330.00665 * 24 22 20 28 28 H 1.08995 * 109.47766 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46712 * 299.99923 * 1 2 3 30 30 H 1.08998 * 109.47600 * 59.99131 * 1 2 3 31 31 H 1.08999 * 109.46882 * 60.00382 * 3 2 1 32 32 H 1.08998 * 109.46969 * 300.00573 * 3 2 1 33 33 H 1.08999 * 109.47502 * 60.00042 * 4 3 2 34 34 H 1.09011 * 109.46923 * 300.00095 * 4 3 2 35 35 H 1.09001 * 109.47814 * 59.99843 * 5 4 3 36 36 H 1.09000 * 109.47560 * 299.99483 * 5 4 3 37 37 H 1.09007 * 109.47060 * 59.99604 * 7 6 5 38 38 H 1.09006 * 109.46904 * 300.00062 * 7 6 5 39 39 H 1.09007 * 109.47069 * 59.99950 * 8 7 6 40 40 H 1.08997 * 109.47541 * 300.00298 * 8 7 6 41 41 H 0.97001 * 120.00245 * 5.61242 * 11 9 8 42 42 H 1.07997 * 119.98691 * 359.97298 * 13 12 11 43 43 H 1.07996 * 119.90792 * 180.02562 * 14 13 12 44 44 H 1.08001 * 120.01082 * 180.02562 * 17 15 14 45 45 H 0.97003 * 120.00251 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 8 5.5824 2.4694 0.0000 7 6 6.2649 3.7248 0.0000 8 6 7.7758 3.4839 0.0006 9 6 8.4956 4.8079 0.0000 10 8 7.8624 5.8424 -0.0004 11 7 9.8429 4.8424 0.0009 12 6 10.5121 6.0675 0.1190 13 6 9.9719 7.0828 0.8945 14 6 10.6332 8.2906 1.0106 15 6 11.8362 8.4918 0.3534 16 9 12.4781 9.6748 0.4701 17 6 12.3811 7.4846 -0.4228 18 6 11.7226 6.2695 -0.5438 19 8 12.2583 5.2773 -1.3001 20 6 13.3689 5.5756 -2.0035 21 1 13.7418 6.5892 -2.0198 22 6 14.0325 4.5816 -2.7058 23 7 13.5781 3.3470 -2.6863 24 14 15.5719 4.9948 -3.6800 25 1 16.7656 4.8329 -2.8116 26 1 15.6803 4.0813 -4.8457 27 1 15.4937 6.3989 -4.1570 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8568 0.6438 -0.8908 34 1 3.8574 0.6434 0.8892 35 1 3.8366 3.1227 0.8904 36 1 3.8360 3.1237 -0.8895 37 1 5.9870 4.2895 0.8900 38 1 5.9870 4.2895 -0.8900 39 1 8.0540 2.9190 -0.8892 40 1 8.0534 2.9194 0.8908 41 1 10.3493 4.0191 -0.0801 42 1 9.0341 6.9293 1.4076 43 1 10.2111 9.0797 1.6152 44 1 13.3192 7.6439 -0.9337 45 1 14.0422 2.6515 -3.1781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830173813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:24 Heat of formation + Delta-G solvation = -202.194749 kcal Electronic energy + Delta-G solvation = -28219.246325 eV Core-core repulsion = 23730.504182 eV Total energy + Delta-G solvation = -4488.742143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.84975 -41.67777 -40.32641 -39.30306 -38.62293 -38.01945 -35.60012 -34.32428 -34.20282 -32.37791 -31.09214 -29.84648 -27.93490 -27.41281 -25.90838 -24.94888 -23.88742 -23.05065 -22.55854 -21.25842 -20.16625 -19.52303 -18.57863 -18.22888 -17.69637 -17.58159 -17.19987 -16.99833 -16.91131 -16.70881 -16.49863 -16.06712 -15.91928 -15.79815 -15.50478 -15.41565 -15.18616 -15.02870 -14.82626 -14.51895 -14.03620 -13.83364 -13.57333 -13.41929 -13.05791 -12.86240 -12.65504 -12.61932 -12.57093 -12.34402 -12.25532 -12.15389 -11.92007 -11.90636 -11.69668 -11.24908 -10.92724 -10.82311 -10.64042 -10.59740 -9.58908 -8.79552 -8.52335 -6.18406 0.14282 0.44166 1.36977 1.43611 1.52030 1.53372 1.87380 2.13433 2.50692 2.64387 3.04051 3.14564 3.17350 3.43346 3.67282 3.91668 3.92855 4.04143 4.05576 4.12536 4.16536 4.30525 4.33426 4.41191 4.45975 4.49139 4.54839 4.56192 4.59894 4.66500 4.78826 4.82648 4.86487 4.89880 5.00634 5.09681 5.13938 5.20828 5.27532 5.32683 5.51711 5.91558 5.99999 6.14546 6.23741 6.44201 6.92175 7.08081 7.60275 8.68097 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012035 B = 0.001964 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.980071 B =14250.380885 C =16392.873192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.064 3.936 4 C -0.115 4.115 5 C 0.064 3.936 6 O -0.403 6.403 7 C 0.086 3.914 8 C -0.130 4.130 9 C 0.518 3.482 10 O -0.563 6.563 11 N -0.652 5.652 12 C 0.060 3.940 13 C -0.049 4.049 14 C -0.204 4.204 15 C 0.124 3.876 16 F -0.144 7.144 17 C -0.265 4.265 18 C 0.131 3.869 19 O -0.201 6.201 20 C -0.416 4.416 21 H 0.098 0.902 22 C -0.008 4.008 23 N -0.903 5.903 24 Si 1.011 2.989 25 H -0.263 1.263 26 H -0.270 1.270 27 H -0.259 1.259 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.419 0.581 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.135 0.865 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.920 -2.278 6.679 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.012 4.012 4 C -0.153 4.153 5 C -0.012 4.012 6 O -0.323 6.323 7 C 0.009 3.991 8 C -0.170 4.170 9 C 0.308 3.692 10 O -0.442 6.442 11 N -0.297 5.297 12 C -0.035 4.035 13 C -0.069 4.069 14 C -0.223 4.223 15 C 0.104 3.896 16 F -0.123 7.123 17 C -0.286 4.286 18 C 0.077 3.923 19 O -0.107 6.107 20 C -0.492 4.492 21 H 0.115 0.885 22 C -0.208 4.208 23 N -0.539 5.539 24 Si 0.831 3.169 25 H -0.188 1.188 26 H -0.195 1.195 27 H -0.183 1.183 28 H 0.113 0.887 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.130 0.870 40 H 0.145 0.855 41 H 0.256 0.744 42 H 0.169 0.831 43 H 0.177 0.823 44 H 0.153 0.847 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.191 -2.351 6.560 20.417 hybrid contribution 1.085 0.384 -0.685 1.339 sum -18.107 -1.966 5.875 19.137 Atomic orbital electron populations 1.22935 0.79248 1.03861 1.01021 1.87827 1.21685 1.28799 1.95664 1.22409 0.92568 0.84592 1.01625 1.21320 0.93568 0.96507 1.03902 1.22417 0.79941 0.97179 1.01673 1.87767 1.19187 1.29612 1.95700 1.22015 0.90356 0.85052 1.01687 1.21413 0.94356 0.93683 1.07523 1.20990 0.81387 0.92149 0.74692 1.90665 1.66554 1.36383 1.50577 1.43295 1.06644 1.08269 1.71472 1.17138 0.92900 0.90044 1.03407 1.20709 0.99537 0.91226 0.95446 1.20869 0.95331 0.99851 1.06290 1.17464 0.92513 0.80838 0.98787 1.91430 1.81539 1.44620 1.94719 1.20955 1.04537 0.94472 1.08652 1.19212 0.93116 0.88804 0.91125 1.83903 1.40792 1.33596 1.52363 1.21718 1.03166 0.97069 1.27270 0.88454 1.26378 1.02005 0.94240 0.98217 1.70110 1.40848 1.01686 1.41304 0.84678 0.75915 0.78887 0.77406 1.18800 1.19507 1.18281 0.88676 0.92933 0.93074 0.91689 0.91985 0.91249 0.90889 0.91642 0.92176 0.91881 0.92978 0.87011 0.85538 0.74381 0.83061 0.82291 0.84707 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.28 10.70 -148.98 -1.59 -8.87 16 3 C 0.06 0.88 5.94 71.98 0.43 1.30 16 4 C -0.12 -1.88 5.95 30.59 0.18 -1.69 16 5 C 0.06 1.06 5.94 71.98 0.43 1.49 16 6 O -0.40 -8.89 10.34 -148.98 -1.54 -10.43 16 7 C 0.09 1.92 5.23 71.98 0.38 2.29 16 8 C -0.13 -3.02 6.07 29.85 0.18 -2.84 16 9 C 0.52 16.19 7.56 87.66 0.66 16.85 16 10 O -0.56 -20.15 13.74 -3.08 -0.04 -20.19 16 11 N -0.65 -22.98 5.20 -303.03 -1.57 -24.56 16 12 C 0.06 2.41 6.28 38.23 0.24 2.65 16 13 C -0.05 -1.73 8.65 22.37 0.19 -1.54 16 14 C -0.20 -6.83 10.02 22.33 0.22 -6.60 16 15 C 0.12 4.69 7.29 22.37 0.16 4.86 16 16 F -0.14 -5.18 17.26 44.97 0.78 -4.40 16 17 C -0.27 -11.53 9.11 22.41 0.20 -11.33 16 18 C 0.13 6.08 6.66 22.69 0.15 6.23 16 19 O -0.20 -10.81 9.30 -22.74 -0.21 -11.02 16 20 C -0.42 -22.53 9.44 67.91 0.64 -21.89 16 21 H 0.10 4.97 5.30 -2.91 -0.02 4.95 16 22 C -0.01 -0.44 5.49 84.83 0.47 0.02 16 23 N -0.90 -50.50 13.67 21.61 0.30 -50.20 16 24 Si 1.01 40.60 29.55 68.60 2.03 42.63 16 25 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 27 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.35 8.10 -2.38 -0.02 1.33 16 38 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 39 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.42 14.37 8.55 -92.71 -0.79 13.58 16 42 H 0.15 4.90 6.48 -2.91 -0.02 4.88 16 43 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 44 H 0.14 5.97 5.71 -2.91 -0.02 5.96 16 45 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -66.68 389.91 4.15 -62.53 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.23 Total: 33.22 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 5.79 Total: -8.69 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -1.28 Total: -74.76 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -3.39 Total: -50.52 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.40 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -66.68 4.15 -62.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830173813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.663 kcal (2) G-P(sol) polarization free energy of solvation -66.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds