Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47419 * 2 1 4 4 C 1.50707 * 109.46837 * 239.99729 * 2 1 3 5 5 O 1.20826 * 119.99832 * 240.00231 * 4 2 1 6 6 O 1.34228 * 119.99574 * 60.00534 * 4 2 1 7 7 C 1.45210 * 116.99632 * 179.97438 * 6 4 2 8 8 C 1.50692 * 109.47083 * 179.97438 * 7 6 4 9 9 O 1.21297 * 119.99860 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00235 * 179.97438 * 8 7 6 11 11 C 1.37093 * 120.00311 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99982 * 0.02562 * 11 10 8 13 13 C 1.38952 * 119.99935 * 180.02562 * 11 10 8 14 14 N 1.31418 * 119.99819 * 180.02562 * 13 11 10 15 15 Si 1.86794 * 120.00137 * 359.97438 * 13 11 10 16 16 H 1.48499 * 109.46938 * 90.00452 * 15 13 11 17 17 H 1.48501 * 109.47223 * 209.99829 * 15 13 11 18 18 H 1.48494 * 109.47255 * 330.00055 * 15 13 11 19 19 C 1.50704 * 109.46999 * 120.00289 * 2 1 3 20 20 C 1.36124 * 120.17219 * 241.98191 * 19 2 1 21 21 C 1.39336 * 120.99168 * 179.97438 * 20 19 2 22 22 C 1.36128 * 120.98415 * 0.07951 * 21 20 19 23 23 C 1.40506 * 119.65697 * 359.94131 * 22 21 20 24 24 C 1.40542 * 121.29283 * 180.02562 * 23 22 21 25 25 C 1.36090 * 119.65096 * 179.97438 * 24 23 22 26 26 C 1.39383 * 120.99805 * 0.02562 * 25 24 23 27 27 C 1.36089 * 120.98953 * 359.97438 * 26 25 24 28 28 C 1.40494 * 120.17543 * 62.00395 * 19 2 1 29 29 H 1.09004 * 109.47073 * 307.06267 * 1 2 3 30 30 H 1.09000 * 109.46739 * 67.05887 * 1 2 3 31 31 H 1.08992 * 109.47433 * 187.05932 * 1 2 3 32 32 H 1.08999 * 109.46919 * 182.81675 * 3 2 1 33 33 H 1.08999 * 109.47043 * 302.81917 * 3 2 1 34 34 H 1.08997 * 109.47175 * 62.81586 * 3 2 1 35 35 H 1.09003 * 109.47116 * 300.00059 * 7 6 4 36 36 H 1.09000 * 109.46640 * 59.99991 * 7 6 4 37 37 H 0.97004 * 119.99656 * 0.02562 * 10 8 7 38 38 H 0.96998 * 119.99738 * 179.97438 * 14 13 11 39 39 H 1.08004 * 119.50386 * 0.02562 * 20 19 2 40 40 H 1.07990 * 119.50681 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.16616 * 180.22614 * 22 21 20 42 42 H 1.08000 * 120.17453 * 359.93468 * 24 23 22 43 43 H 1.08004 * 119.50206 * 180.02562 * 25 24 23 44 44 H 1.07996 * 119.50559 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.16935 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7269 -1.6929 -1.1196 6 8 1.7080 -0.2518 -2.4496 7 6 2.2276 -0.9858 -3.5897 8 6 1.7626 -0.3294 -4.8640 9 8 1.0618 0.6595 -4.8160 10 7 2.1254 -0.8410 -6.0569 11 6 1.7019 -0.2441 -7.2161 12 1 1.0779 0.6364 -7.1735 13 6 2.0756 -0.7720 -8.4460 14 7 1.6700 -0.1995 -9.5573 15 14 3.1553 -2.2944 -8.5198 16 1 2.2995 -3.5078 -8.5388 17 1 3.9842 -2.2542 -9.7513 18 1 4.0407 -2.3316 -7.3282 19 6 2.0323 -0.7105 1.2305 20 6 2.7815 -0.0412 2.1490 21 6 3.2543 -0.6811 3.2929 22 6 2.9819 -1.9946 3.5243 23 6 2.2119 -2.7186 2.5984 24 6 1.9096 -4.0758 2.8032 25 6 1.1605 -4.7446 1.8848 26 6 0.6870 -4.1043 0.7409 27 6 0.9597 -2.7913 0.5093 28 6 1.7302 -2.0672 1.4354 29 1 -0.3633 0.6194 0.8201 30 1 -0.3633 0.4006 -0.9464 31 1 -0.3634 -1.0198 0.1263 32 1 3.1289 1.4428 -0.0505 33 1 1.6361 1.9707 -0.8636 34 1 1.7186 1.9415 0.9141 35 1 3.3171 -0.9848 -3.5566 36 1 1.8640 -2.0129 -3.5569 37 1 2.6855 -1.6320 -6.0952 38 1 1.9312 -0.5677 -10.4158 39 1 3.0123 1.0017 1.9891 40 1 3.8463 -0.1270 4.0061 41 1 3.3520 -2.4765 4.4172 42 1 2.2705 -4.5853 3.6844 43 1 0.9293 -5.7875 2.0448 44 1 0.0949 -4.6584 0.0277 45 1 0.5865 -2.3084 -0.3817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837780967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = -65.950689 kcal Electronic energy + Delta-G solvation = -29389.136713 eV Core-core repulsion = 25337.071781 eV Total energy + Delta-G solvation = -4052.064932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50196 -40.00652 -38.39278 -37.18793 -36.23527 -35.50543 -34.06700 -31.90758 -31.78886 -30.60296 -29.31467 -28.56221 -27.39685 -24.92279 -24.23936 -23.37365 -22.83696 -21.96546 -19.76560 -19.62968 -18.60397 -17.68994 -17.52713 -17.04154 -16.63163 -16.23769 -16.05162 -15.50829 -15.00953 -14.88454 -14.68422 -14.27244 -13.96326 -13.80403 -13.73590 -13.57817 -13.14871 -13.10261 -12.71026 -12.62536 -12.45014 -12.30671 -12.23135 -11.98959 -11.92853 -11.89053 -11.58461 -11.38095 -11.26859 -10.99947 -10.69000 -10.65769 -10.49221 -10.24295 -10.05371 -9.93072 -9.68234 -8.72846 -8.67272 -8.29961 -8.00544 -6.40014 -3.92830 0.35153 0.89442 1.85724 2.22934 2.58330 2.90394 2.98320 3.02879 3.11626 3.54804 3.97051 4.03177 4.09156 4.34762 4.50266 4.57616 4.69426 4.75202 4.82828 4.84218 4.91446 4.97325 5.10462 5.21869 5.25879 5.30312 5.32992 5.41869 5.49931 5.53459 5.54562 5.57541 5.64077 5.67326 5.79179 5.93953 5.97819 6.01884 6.06171 6.10467 6.26778 6.39133 6.48400 6.52028 6.66420 6.86111 7.44108 7.80761 8.00238 8.47126 8.82947 9.29222 9.64873 10.72269 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.002698 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.803742 B =10376.541901 C =11234.445331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.010 4.010 3 C -0.146 4.146 4 C 0.462 3.538 5 O -0.498 6.498 6 O -0.319 6.319 7 C 0.057 3.943 8 C 0.448 3.552 9 O -0.556 6.556 10 N -0.580 5.580 11 C -0.308 4.308 12 H 0.122 0.878 13 C 0.045 3.955 14 N -0.875 5.875 15 Si 0.878 3.122 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.268 1.268 19 C -0.053 4.053 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.106 4.106 23 C -0.052 4.052 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.090 4.090 28 C -0.024 4.024 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.373 0.627 38 H 0.275 0.725 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.646 -5.599 27.002 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 C -0.203 4.203 4 C 0.304 3.696 5 O -0.385 6.385 6 O -0.234 6.234 7 C -0.021 4.021 8 C 0.233 3.767 9 O -0.438 6.438 10 N -0.220 5.220 11 C -0.436 4.436 12 H 0.140 0.860 13 C -0.159 4.159 14 N -0.514 5.514 15 Si 0.704 3.296 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.194 1.194 19 C -0.053 4.053 20 C -0.129 4.129 21 C -0.134 4.134 22 C -0.124 4.124 23 C -0.052 4.052 24 C -0.130 4.130 25 C -0.132 4.132 26 C -0.139 4.139 27 C -0.108 4.108 28 C -0.024 4.024 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.206 0.794 38 H 0.086 0.914 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.370 -5.208 26.770 27.306 hybrid contribution 1.131 -1.486 -0.424 1.915 sum 2.501 -6.694 26.345 27.297 Atomic orbital electron populations 1.22168 0.90507 1.03793 1.04519 1.19314 0.98246 0.96168 0.87375 1.21987 1.01834 0.92307 1.04201 1.23487 0.78061 0.82914 0.85122 1.90706 1.35165 1.25413 1.87245 1.86553 1.68653 1.54455 1.13715 1.22761 0.99656 0.95687 0.84012 1.19174 0.86504 0.87507 0.83491 1.90603 1.40107 1.26770 1.86330 1.42040 1.46896 1.27572 1.05465 1.19422 1.30481 1.12717 0.80980 0.85993 1.25035 0.97717 0.98169 0.94953 1.69615 1.44264 1.39948 0.97582 0.86688 0.80884 0.83307 0.78692 1.19397 1.19932 1.19367 1.19180 0.98502 0.92899 0.94737 1.20858 0.97256 1.00653 0.94153 1.20789 1.00198 0.94973 0.97486 1.21022 0.98128 0.94582 0.98644 1.18031 0.98559 0.94118 0.94518 1.20960 0.99149 0.93211 0.99678 1.20836 0.98020 0.99916 0.94385 1.20857 1.00469 0.94898 0.97648 1.21166 0.96953 0.94715 0.97974 1.17763 0.97521 0.92943 0.94204 0.90608 0.89813 0.91148 0.91639 0.89841 0.90513 0.89504 0.89534 0.79411 0.91387 0.85148 0.85830 0.85670 0.85727 0.86092 0.86030 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.15 37.16 0.30 -1.34 16 2 C -0.01 -0.12 0.70 -156.81 -0.11 -0.23 16 3 C -0.15 -1.49 7.07 37.16 0.26 -1.23 16 4 C 0.46 7.14 5.03 36.01 0.18 7.32 16 5 O -0.50 -8.53 13.55 -18.75 -0.25 -8.79 16 6 O -0.32 -5.64 9.45 -45.90 -0.43 -6.07 16 7 C 0.06 1.02 5.94 36.00 0.21 1.23 16 8 C 0.45 10.31 7.86 -10.99 -0.09 10.23 16 9 O -0.56 -15.07 16.08 -14.12 -0.23 -15.30 16 10 N -0.58 -13.73 5.09 -10.97 -0.06 -13.78 16 11 C -0.31 -8.58 10.16 -14.93 -0.15 -8.73 16 12 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 13 C 0.05 1.22 5.50 -17.46 -0.10 1.12 16 14 N -0.87 -25.08 13.96 55.50 0.77 -24.31 16 15 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 19 C -0.05 -0.64 4.38 -104.53 -0.46 -1.10 16 20 C -0.11 -1.13 8.94 -39.93 -0.36 -1.49 16 21 C -0.12 -1.06 9.95 -39.93 -0.40 -1.45 16 22 C -0.11 -1.01 9.77 -39.49 -0.39 -1.39 16 23 C -0.05 -0.60 5.74 -106.83 -0.61 -1.22 16 24 C -0.11 -1.12 9.77 -39.49 -0.39 -1.50 16 25 C -0.11 -1.13 9.95 -39.93 -0.40 -1.53 16 26 C -0.12 -1.37 9.95 -39.93 -0.40 -1.76 16 27 C -0.09 -1.17 6.49 -39.48 -0.26 -1.42 16 28 C -0.02 -0.31 5.06 -106.83 -0.54 -0.85 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 31 H 0.07 0.76 5.06 -51.93 -0.26 0.49 16 32 H 0.06 0.66 7.77 -51.93 -0.40 0.25 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.58 7.23 -51.93 -0.38 0.21 16 35 H 0.09 1.42 8.13 -51.93 -0.42 0.99 16 36 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 37 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 38 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.13 1.04 5.80 -52.48 -0.30 0.74 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 45 H 0.12 1.63 4.34 -52.49 -0.23 1.41 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -34.18 369.44 -8.60 -42.78 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.58 Total: 10.90 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.67 Total: -5.34 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.72 Total: -38.09 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.91 Total: -30.16 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.18 -8.60 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837780967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.171 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds