Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48501 * 109.47031 * 240.00034 * 3 2 1 5 5 H 1.48497 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47310 * 119.99713 * 3 2 1 7 7 C 1.37883 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99977 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47027 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54389 * 68.37581 * 10 9 7 12 12 O 1.42095 * 110.54163 * 291.62464 * 10 9 7 13 13 N 1.65599 * 104.45128 * 180.02562 * 10 9 7 14 14 C 1.34771 * 119.99973 * 64.99679 * 13 10 9 15 15 O 1.21282 * 120.00389 * 0.02562 * 14 13 10 16 16 C 1.50705 * 120.00371 * 180.02562 * 14 13 10 17 17 C 1.52997 * 109.47390 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47060 * 64.99953 * 17 16 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 20 20 C 1.52993 * 109.47473 * 60.00001 * 19 18 17 21 21 C 1.53005 * 109.47212 * 59.99579 * 20 19 18 22 22 C 1.52996 * 109.47245 * 300.00560 * 21 20 19 23 23 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 24 24 C 1.52997 * 109.46975 * 299.99595 * 22 21 20 25 25 C 1.53002 * 109.46817 * 184.99865 * 17 16 14 26 26 C 1.52996 * 109.46972 * 299.99733 * 25 17 16 27 27 H 0.97002 * 119.99696 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47205 * 60.00320 * 9 7 2 29 29 H 1.08998 * 109.47182 * 300.00213 * 9 7 2 30 30 H 0.97000 * 119.99901 * 245.00435 * 13 10 9 31 31 H 1.09001 * 109.46949 * 59.99547 * 16 14 13 32 32 H 1.09004 * 109.46555 * 300.00319 * 16 14 13 33 33 H 1.09002 * 109.47153 * 304.99634 * 17 16 14 34 34 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 35 35 H 1.09004 * 109.47108 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.46870 * 299.99783 * 19 18 17 37 37 H 1.09002 * 109.47722 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.46962 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.46524 * 60.00440 * 21 20 19 40 40 H 1.09000 * 109.46870 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47437 * 180.02562 * 23 18 17 42 42 H 1.09002 * 109.47508 * 59.99571 * 23 18 17 43 43 H 1.09001 * 109.47375 * 300.00370 * 24 22 21 44 44 H 1.09002 * 109.47497 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47407 * 60.00219 * 25 17 16 46 46 H 1.09004 * 109.47552 * 60.00305 * 26 25 17 47 47 H 1.09001 * 109.46993 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0005 11 8 3.1265 -3.9384 1.2364 12 8 3.1264 -3.9383 -1.2375 13 7 1.4794 -5.2341 -0.0013 14 6 0.6890 -5.5026 -1.0594 15 8 0.6741 -4.7512 -2.0113 16 6 -0.1763 -6.7364 -1.0599 17 6 -0.9672 -6.8042 -2.3678 18 6 -0.0005 -6.9873 -3.5395 19 6 0.7876 -8.2852 -3.3523 20 6 -0.1817 -9.4678 -3.3014 21 6 -0.9728 -9.5355 -4.6094 22 6 -1.7610 -8.2376 -4.7965 23 6 -0.7915 -7.0544 -4.8475 24 6 -2.7276 -8.0545 -3.6248 25 6 -1.9367 -7.9868 -2.3168 26 6 -1.1484 -9.2846 -2.1297 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 1.4915 -5.8352 0.7599 31 1 -0.8678 -6.6955 -0.2183 32 1 0.4533 -7.6217 -0.9701 33 1 -1.5288 -5.8795 -2.5011 34 1 0.6901 -6.1448 -3.5758 35 1 1.4760 -8.4159 -4.1874 36 1 1.3511 -8.2369 -2.4206 37 1 0.3797 -10.3925 -3.1677 38 1 -1.6637 -10.3778 -4.5729 39 1 -0.2841 -9.6659 -5.4441 40 1 -2.3241 -8.2857 -5.7285 41 1 -0.1029 -7.1854 -5.6822 42 1 -1.3528 -6.1296 -4.9806 43 1 -3.4183 -8.8971 -3.5885 44 1 -3.2895 -7.1301 -3.7583 45 1 -2.6254 -7.8563 -1.4821 46 1 -0.5849 -9.2364 -1.1979 47 1 -1.8390 -10.1272 -2.0938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845559611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -151.091966 kcal Electronic energy + Delta-G solvation = -29391.701382 eV Core-core repulsion = 25471.388398 eV Total energy + Delta-G solvation = -3920.312984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80045 -39.51524 -36.23654 -35.16309 -34.09424 -33.97683 -33.35011 -32.72826 -32.62946 -29.09342 -28.94579 -25.95198 -25.01306 -23.54161 -21.92803 -21.53828 -21.51402 -20.38509 -19.14831 -17.53117 -17.36279 -17.06705 -16.43229 -15.90732 -15.34150 -15.23975 -14.81951 -14.56463 -14.43611 -14.29915 -14.21181 -13.97904 -13.44877 -13.39034 -13.14887 -12.60306 -12.53580 -12.40460 -12.39593 -12.16103 -11.88747 -11.78468 -11.47305 -11.28897 -11.18799 -11.10896 -10.97536 -10.92641 -10.89044 -10.86850 -10.72800 -10.65677 -10.46303 -10.03519 -9.84096 -9.71210 -9.66358 -9.39884 -9.15481 -8.70086 -6.32940 -4.44148 1.05673 2.44762 3.21252 3.24669 3.27169 3.31803 4.21552 4.31292 4.34150 4.40438 4.52481 4.67172 4.88983 4.94258 4.99740 5.00367 5.07246 5.13345 5.18623 5.19410 5.23969 5.26818 5.29738 5.34359 5.39235 5.47824 5.55595 5.64869 5.69706 5.75406 5.84302 5.88890 5.90210 5.97927 6.01489 6.07161 6.10653 6.16012 6.35664 6.42941 6.51666 6.59029 6.60200 6.76871 7.04104 7.41663 7.73692 7.85001 8.56771 9.23125 10.78803 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.003096 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.995374 B = 9041.352994 C = 9614.505280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.070 0.930 9 C -0.404 4.404 10 S 2.553 3.447 11 O -0.972 6.972 12 O -0.953 6.953 13 N -1.063 6.063 14 C 0.530 3.470 15 O -0.484 6.484 16 C -0.144 4.144 17 C -0.063 4.063 18 C -0.092 4.092 19 C -0.113 4.113 20 C -0.086 4.086 21 C -0.106 4.106 22 C -0.087 4.087 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.081 4.081 26 C -0.110 4.110 27 H 0.269 0.731 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.424 0.576 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.899 -20.695 -4.751 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.088 0.912 9 C -0.540 4.540 10 S 2.655 3.345 11 O -0.962 6.962 12 O -0.944 6.944 13 N -0.823 5.823 14 C 0.317 3.683 15 O -0.355 6.355 16 C -0.186 4.186 17 C -0.082 4.082 18 C -0.110 4.110 19 C -0.150 4.150 20 C -0.104 4.104 21 C -0.143 4.143 22 C -0.106 4.106 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.100 4.100 26 C -0.147 4.147 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.257 0.743 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.115 -20.108 -5.487 21.722 hybrid contribution -0.213 0.656 0.556 0.886 sum -6.328 -19.452 -4.931 21.042 Atomic orbital electron populations 1.69946 1.06261 1.27845 1.47233 1.24916 0.95037 0.99564 0.93369 0.86404 0.79630 0.81293 0.79475 1.19351 1.20658 1.19405 1.20249 0.92700 0.88535 1.56056 0.91229 1.27590 1.09880 1.09237 1.07327 1.07095 0.77292 0.76045 0.74024 1.93515 1.71299 1.86049 1.45375 1.93525 1.70874 1.85273 1.44702 1.55507 1.56399 1.43717 1.26642 1.20634 0.78918 0.87832 0.80958 1.90871 1.63602 1.48694 1.32308 1.22026 0.99334 0.96216 1.00997 1.20930 0.95776 0.98787 0.92682 1.21242 0.97309 0.98425 0.94004 1.21625 0.97268 0.94466 1.01647 1.21052 0.96214 0.98100 0.95084 1.21515 0.98534 0.97051 0.97214 1.21072 0.96281 0.95248 0.97954 1.21515 0.97783 0.97777 0.97252 1.21509 0.97077 1.01543 0.94227 1.21084 0.96461 0.94589 0.97823 1.21594 0.97987 0.97161 0.98006 0.92104 0.88344 0.89813 0.74275 0.88108 0.87891 0.89828 0.88742 0.92033 0.92089 0.91643 0.92394 0.92233 0.91646 0.92164 0.91755 0.92200 0.91844 0.91108 0.91818 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 13.29 55.43 0.74 -24.38 16 2 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 3 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.11 9.13 -34.44 -0.31 -15.42 16 8 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 9 C -0.40 -10.06 5.64 36.00 0.20 -9.85 16 10 S 2.55 55.30 5.03 -107.50 -0.54 54.76 16 11 O -0.97 -22.33 18.08 -57.54 -1.04 -23.37 16 12 O -0.95 -23.70 17.03 -64.80 -1.10 -24.81 16 13 N -1.06 -16.58 5.60 31.22 0.17 -16.41 16 14 C 0.53 8.29 7.28 -10.99 -0.08 8.21 16 15 O -0.48 -9.55 12.07 -11.60 -0.14 -9.69 16 16 C -0.14 -1.54 4.47 -27.88 -0.12 -1.66 16 17 C -0.06 -0.70 1.58 -90.62 -0.14 -0.84 16 18 C -0.09 -1.11 2.46 -90.62 -0.22 -1.33 16 19 C -0.11 -1.17 4.92 -26.74 -0.13 -1.30 16 20 C -0.09 -0.73 3.20 -90.62 -0.29 -1.02 16 21 C -0.11 -0.87 5.19 -26.73 -0.14 -1.01 16 22 C -0.09 -0.78 3.20 -90.60 -0.29 -1.07 16 23 C -0.11 -1.15 5.20 -26.71 -0.14 -1.29 16 24 C -0.11 -0.91 5.19 -26.73 -0.14 -1.05 16 25 C -0.08 -0.71 2.72 -90.62 -0.25 -0.95 16 26 C -0.11 -0.86 4.92 -26.73 -0.13 -0.99 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.10 2.56 7.19 -51.93 -0.37 2.19 16 29 H 0.08 2.01 8.14 -51.92 -0.42 1.59 16 30 H 0.42 4.71 8.79 -34.47 -0.30 4.41 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.90 4.82 -51.93 -0.25 0.65 16 33 H 0.08 1.07 7.95 -51.93 -0.41 0.66 16 34 H 0.09 1.46 5.95 -51.93 -0.31 1.15 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.46 6.54 -51.93 -0.34 0.12 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -34.93 361.96 -11.12 -46.05 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.35 Total: 3.71 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -2.28 Total: -27.50 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.91 Total: -40.79 kcal Atomic # 8 Polarization: -55.58 SS G_CDS: -2.28 Total: -57.87 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 55.30 SS G_CDS: -0.54 Total: 54.76 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.93 -11.12 -46.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845559611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.044 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds