Wall clock time and date at job start Sat Apr 11 2020 06:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48501 * 109.47031 * 240.00034 * 3 2 1 5 5 H 1.48497 * 109.47194 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47310 * 119.99713 * 3 2 1 7 7 C 1.37883 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99579 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99977 * 359.97438 * 7 2 1 10 10 S 1.81400 * 109.47027 * 180.02562 * 9 7 2 11 11 O 1.42097 * 110.54389 * 68.37581 * 10 9 7 12 12 O 1.42095 * 110.54163 * 291.62464 * 10 9 7 13 13 N 1.65599 * 104.45128 * 180.02562 * 10 9 7 14 14 C 1.34771 * 119.99973 * 64.99679 * 13 10 9 15 15 O 1.21282 * 120.00389 * 0.02562 * 14 13 10 16 16 C 1.50705 * 120.00371 * 180.02562 * 14 13 10 17 17 C 1.52997 * 109.47390 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47060 * 64.99953 * 17 16 14 19 19 C 1.52996 * 109.47328 * 60.00126 * 18 17 16 20 20 C 1.52993 * 109.47473 * 60.00001 * 19 18 17 21 21 C 1.53005 * 109.47212 * 59.99579 * 20 19 18 22 22 C 1.52996 * 109.47245 * 300.00560 * 21 20 19 23 23 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 24 24 C 1.52997 * 109.46975 * 299.99595 * 22 21 20 25 25 C 1.53002 * 109.46817 * 184.99865 * 17 16 14 26 26 C 1.52996 * 109.46972 * 299.99733 * 25 17 16 27 27 H 0.97002 * 119.99696 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47205 * 60.00320 * 9 7 2 29 29 H 1.08998 * 109.47182 * 300.00213 * 9 7 2 30 30 H 0.97000 * 119.99901 * 245.00435 * 13 10 9 31 31 H 1.09001 * 109.46949 * 59.99547 * 16 14 13 32 32 H 1.09004 * 109.46555 * 300.00319 * 16 14 13 33 33 H 1.09002 * 109.47153 * 304.99634 * 17 16 14 34 34 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 35 35 H 1.09004 * 109.47108 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.46870 * 299.99783 * 19 18 17 37 37 H 1.09002 * 109.47722 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.46962 * 180.02562 * 21 20 19 39 39 H 1.08996 * 109.46524 * 60.00440 * 21 20 19 40 40 H 1.09000 * 109.46870 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.47437 * 180.02562 * 23 18 17 42 42 H 1.09002 * 109.47508 * 59.99571 * 23 18 17 43 43 H 1.09001 * 109.47375 * 300.00370 * 24 22 21 44 44 H 1.09002 * 109.47497 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47407 * 60.00219 * 25 17 16 46 46 H 1.09004 * 109.47552 * 60.00305 * 26 25 17 47 47 H 1.09001 * 109.46993 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4297 -3.8780 -0.0005 11 8 3.1265 -3.9384 1.2364 12 8 3.1264 -3.9383 -1.2375 13 7 1.4794 -5.2341 -0.0013 14 6 0.6890 -5.5026 -1.0594 15 8 0.6741 -4.7512 -2.0113 16 6 -0.1763 -6.7364 -1.0599 17 6 -0.9672 -6.8042 -2.3678 18 6 -0.0005 -6.9873 -3.5395 19 6 0.7876 -8.2852 -3.3523 20 6 -0.1817 -9.4678 -3.3014 21 6 -0.9728 -9.5355 -4.6094 22 6 -1.7610 -8.2376 -4.7965 23 6 -0.7915 -7.0544 -4.8475 24 6 -2.7276 -8.0545 -3.6248 25 6 -1.9367 -7.9868 -2.3168 26 6 -1.1484 -9.2846 -2.1297 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5571 0.8896 30 1 1.4915 -5.8352 0.7599 31 1 -0.8678 -6.6955 -0.2183 32 1 0.4533 -7.6217 -0.9701 33 1 -1.5288 -5.8795 -2.5011 34 1 0.6901 -6.1448 -3.5758 35 1 1.4760 -8.4159 -4.1874 36 1 1.3511 -8.2369 -2.4206 37 1 0.3797 -10.3925 -3.1677 38 1 -1.6637 -10.3778 -4.5729 39 1 -0.2841 -9.6659 -5.4441 40 1 -2.3241 -8.2857 -5.7285 41 1 -0.1029 -7.1854 -5.6822 42 1 -1.3528 -6.1296 -4.9806 43 1 -3.4183 -8.8971 -3.5885 44 1 -3.2895 -7.1301 -3.7583 45 1 -2.6254 -7.8563 -1.4821 46 1 -0.5849 -9.2364 -1.1979 47 1 -1.8390 -10.1272 -2.0938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845559611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:41 Heat of formation + Delta-G solvation = -175.054036 kcal Electronic energy + Delta-G solvation = -29392.740455 eV Core-core repulsion = 25471.388398 eV Total energy + Delta-G solvation = -3921.352057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.63113 -40.80216 -38.10937 -37.06173 -35.57764 -35.42314 -34.83028 -33.44820 -33.39921 -31.12574 -29.86114 -26.68891 -25.93974 -25.57255 -23.05098 -22.33939 -22.23255 -21.36631 -20.74353 -19.28816 -18.55566 -18.38547 -18.02958 -17.53917 -16.74114 -16.52827 -16.13518 -16.05792 -15.63295 -15.32900 -15.20377 -14.92414 -14.52118 -14.25356 -14.16207 -14.11974 -13.96315 -13.70100 -13.52045 -13.38453 -13.22725 -13.14141 -13.11215 -13.01744 -12.74882 -12.64896 -12.55676 -12.00052 -11.91261 -11.87693 -11.71622 -11.67188 -11.61414 -11.51400 -11.25495 -11.04020 -10.81067 -10.43619 -10.39560 -10.32837 -8.45103 -6.64609 -0.73417 1.15819 1.35221 1.39631 1.47557 1.65488 2.28104 2.75450 2.88995 3.19531 3.43517 3.56104 3.66059 3.75447 4.00119 4.15495 4.19059 4.27680 4.36574 4.39728 4.44987 4.46579 4.49354 4.61775 4.63498 4.65113 4.70561 4.73254 4.81976 4.92323 4.95872 4.99281 5.07910 5.21320 5.25075 5.25272 5.25923 5.27727 5.30496 5.34282 5.37843 5.62215 5.65521 5.68204 5.72990 5.74567 5.82217 6.44563 6.60380 7.07139 8.67631 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.003096 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.995374 B = 9041.352994 C = 9614.505280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.571 4.571 8 H 0.067 0.933 9 C -0.421 4.421 10 S 2.597 3.403 11 O -0.982 6.982 12 O -0.988 6.988 13 N -1.044 6.044 14 C 0.523 3.477 15 O -0.529 6.529 16 C -0.135 4.135 17 C -0.064 4.064 18 C -0.095 4.095 19 C -0.113 4.113 20 C -0.083 4.083 21 C -0.104 4.104 22 C -0.085 4.085 23 C -0.108 4.108 24 C -0.107 4.107 25 C -0.076 4.076 26 C -0.108 4.108 27 H 0.275 0.725 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.447 0.553 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.623 -23.271 -3.533 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.610 4.610 8 H 0.085 0.915 9 C -0.555 4.555 10 S 2.697 3.303 11 O -0.973 6.973 12 O -0.978 6.978 13 N -0.810 5.810 14 C 0.312 3.688 15 O -0.402 6.402 16 C -0.176 4.176 17 C -0.083 4.083 18 C -0.113 4.113 19 C -0.150 4.150 20 C -0.102 4.102 21 C -0.141 4.141 22 C -0.103 4.103 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.095 4.095 26 C -0.146 4.146 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.287 0.713 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.095 0.905 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.845 -22.687 -4.235 24.072 hybrid contribution -0.014 1.417 0.112 1.422 sum -6.859 -21.269 -4.124 22.725 Atomic orbital electron populations 1.70030 1.07609 1.29049 1.47628 1.25880 0.96021 1.03259 0.92645 0.85476 0.78723 0.77089 0.79901 1.19027 1.19160 1.18121 1.20705 0.93078 0.90542 1.56699 0.91532 1.27646 1.10724 1.10853 1.06300 1.05429 0.76212 0.75786 0.72845 1.93491 1.71643 1.86477 1.45676 1.93481 1.71824 1.86003 1.46464 1.54955 1.55775 1.42287 1.28016 1.21730 0.78498 0.88827 0.79705 1.90878 1.64784 1.50537 1.34018 1.22196 0.99287 0.94002 1.02092 1.20928 0.95905 0.99080 0.92417 1.21173 0.97138 0.97871 0.95167 1.21629 0.97537 0.94431 1.01412 1.21067 0.96034 0.97403 0.95663 1.21518 0.98667 0.96823 0.97138 1.21061 0.95947 0.94612 0.98683 1.21513 0.98052 0.98274 0.96717 1.21533 0.97123 1.01847 0.93942 1.21085 0.96075 0.93844 0.98449 1.21630 0.98046 0.96854 0.98023 0.91613 0.90433 0.89634 0.71333 0.84389 0.84901 0.92566 0.93253 0.92894 0.91867 0.90110 0.90573 0.92602 0.91143 0.92785 0.93665 0.90185 0.92966 0.89418 0.90467 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.10 13.29 21.45 0.28 -52.81 16 2 C 0.03 1.45 5.46 84.66 0.46 1.91 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.57 -33.19 9.13 25.60 0.23 -32.95 16 8 H 0.07 3.77 7.71 -2.91 -0.02 3.75 16 9 C -0.42 -21.78 5.64 71.24 0.40 -21.38 16 10 S 2.60 114.07 5.03 -56.49 -0.28 113.78 16 11 O -0.98 -44.74 18.08 -127.65 -2.31 -47.05 16 12 O -0.99 -50.46 17.03 -120.71 -2.06 -52.52 16 13 N -1.04 -31.73 5.60 -173.53 -0.97 -32.70 16 14 C 0.52 16.30 7.28 87.66 0.64 16.94 16 15 O -0.53 -22.01 12.07 13.37 0.16 -21.85 16 16 C -0.13 -2.56 4.47 29.85 0.13 -2.43 16 17 C -0.06 -1.38 1.58 -10.79 -0.02 -1.39 16 18 C -0.10 -2.36 2.46 -10.79 -0.03 -2.39 16 19 C -0.11 -2.22 4.92 30.59 0.15 -2.07 16 20 C -0.08 -1.15 3.20 -10.79 -0.03 -1.19 16 21 C -0.10 -1.45 5.19 30.59 0.16 -1.29 16 22 C -0.08 -1.42 3.20 -10.78 -0.03 -1.45 16 23 C -0.11 -2.48 5.20 30.61 0.16 -2.32 16 24 C -0.11 -1.61 5.19 30.60 0.16 -1.45 16 25 C -0.08 -1.10 2.72 -10.79 -0.03 -1.13 16 26 C -0.11 -1.21 4.92 30.60 0.15 -1.06 16 27 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.08 4.29 7.19 -2.39 -0.02 4.27 16 29 H 0.09 4.27 8.14 -2.39 -0.02 4.25 16 30 H 0.45 8.89 8.79 -96.75 -0.85 8.03 16 31 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.13 1.81 4.82 -2.39 -0.01 1.79 16 33 H 0.06 1.50 7.95 -2.39 -0.02 1.48 16 34 H 0.05 1.67 5.95 -2.39 -0.01 1.65 16 35 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.19 6.32 -2.39 -0.02 1.17 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.08 0.69 6.54 -2.39 -0.02 0.67 16 47 H 0.08 0.67 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -79.25 361.96 -0.51 -79.76 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.13 Total: 21.33 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 2.51 Total: -53.65 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -0.69 Total: -85.51 kcal Atomic # 8 Polarization: -117.21 SS G_CDS: -4.20 Total: -121.42 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 114.07 SS G_CDS: -0.28 Total: 113.78 kcal Total: -79.25 -0.51 -79.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845559611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.290 kcal (2) G-P(sol) polarization free energy of solvation -79.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds