Wall clock time and date at job start Sat Apr 11 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 117.00119 * 2 1 4 4 O 1.20826 * 120.00159 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00004 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47244 * 179.97438 * 5 3 2 7 7 N 1.46495 * 109.47203 * 180.02562 * 6 5 3 8 8 C 1.37101 * 120.00234 * 265.56814 * 7 6 5 9 9 H 1.07995 * 119.99820 * 145.67359 * 8 7 6 10 10 C 1.38945 * 119.99733 * 325.67127 * 8 7 6 11 11 N 1.31414 * 120.00560 * 338.40742 * 10 8 7 12 12 Si 1.86803 * 119.99839 * 158.40483 * 10 8 7 13 13 H 1.48498 * 109.47173 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46778 * 120.00231 * 12 10 8 15 15 H 1.48496 * 109.47233 * 240.00058 * 12 10 8 16 16 C 1.34776 * 119.99726 * 85.56901 * 7 6 5 17 17 O 1.21291 * 120.00264 * 0.02562 * 16 7 6 18 18 C 1.50707 * 119.99920 * 179.97438 * 16 7 6 19 19 C 1.50694 * 109.47313 * 179.97438 * 18 16 7 20 20 C 1.36132 * 120.17737 * 264.98188 * 19 18 16 21 21 C 1.39327 * 120.99033 * 180.02562 * 20 19 18 22 22 C 1.36132 * 120.99016 * 359.91059 * 21 20 19 23 23 C 1.40502 * 119.65898 * 0.05977 * 22 21 20 24 24 C 1.40537 * 121.30208 * 179.97438 * 23 22 21 25 25 C 1.36095 * 119.65371 * 180.02562 * 24 23 22 26 26 C 1.39377 * 120.99504 * 359.95327 * 25 24 23 27 27 C 1.36087 * 120.99331 * 0.04912 * 26 25 24 28 28 C 1.40510 * 120.17589 * 84.99681 * 19 18 16 29 29 H 1.08996 * 109.47566 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46729 * 300.00512 * 1 2 3 31 31 H 1.08994 * 109.46954 * 59.99626 * 1 2 3 32 32 H 1.09010 * 109.46648 * 60.00401 * 5 3 2 33 33 H 1.08990 * 109.47458 * 300.00455 * 5 3 2 34 34 H 1.09004 * 109.47083 * 60.00169 * 6 5 3 35 35 H 1.09004 * 109.47549 * 300.00656 * 6 5 3 36 36 H 0.96995 * 120.00280 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.46835 * 59.99971 * 18 16 7 38 38 H 1.09001 * 109.46889 * 299.99630 * 18 16 7 39 39 H 1.07999 * 119.50367 * 0.03747 * 20 19 18 40 40 H 1.07995 * 119.50702 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.17057 * 180.32844 * 22 21 20 42 42 H 1.08003 * 120.17802 * 0.03129 * 24 23 22 43 43 H 1.08001 * 119.50226 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.50678 * 180.02562 * 26 25 24 45 45 H 1.08006 * 120.17608 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8186 -0.0002 8 6 6.1430 2.9467 1.1834 9 1 7.1078 2.4771 1.3056 10 6 5.5907 3.6809 2.2258 11 7 4.6674 4.5825 1.9776 12 14 6.1604 3.3861 3.9803 13 1 7.2010 2.3267 3.9914 14 1 6.7272 4.6419 4.5342 15 1 5.0064 2.9558 4.8098 16 6 6.1408 2.7632 -1.1639 17 8 5.5394 2.6504 -2.2112 18 6 7.6458 2.8426 -1.1641 19 6 8.1532 2.7578 -2.5805 20 6 8.5419 1.5600 -3.0975 21 6 9.0142 1.4622 -4.4047 22 6 9.0989 2.5613 -5.2035 23 6 8.7062 3.8149 -4.7051 24 6 8.7797 4.9720 -5.4993 25 6 8.3909 6.1693 -4.9822 26 6 7.9187 6.2671 -3.6745 27 6 7.8337 5.1683 -2.8762 28 6 8.2278 3.9147 -3.3745 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 3.9564 0.7805 -0.8893 33 1 3.9558 0.7809 0.8907 34 1 3.6102 3.2367 0.8894 35 1 3.6108 3.2357 -0.8906 36 1 4.2816 5.0947 2.7053 37 1 8.0533 2.0157 -0.5824 38 1 7.9597 3.7879 -0.7213 39 1 8.4833 0.6722 -2.4853 40 1 9.3166 0.4999 -4.7904 41 1 9.4619 2.4694 -6.2165 42 1 9.1427 4.9114 -6.5147 43 1 8.4488 7.0571 -5.5946 44 1 7.6162 7.2295 -3.2887 45 1 7.4662 5.2593 -1.8646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871338182.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:06 Heat of formation + Delta-G solvation = -75.984286 kcal Electronic energy + Delta-G solvation = -29342.391124 eV Core-core repulsion = 25289.891103 eV Total energy + Delta-G solvation = -4052.500021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.24190 -40.02917 -38.51165 -36.30822 -36.09945 -34.98232 -33.27952 -31.99223 -30.89749 -29.97317 -29.63759 -27.70526 -26.80153 -25.09024 -23.45166 -22.87037 -22.63789 -20.79552 -20.06896 -19.10191 -17.46349 -17.20854 -16.78185 -16.48978 -16.25317 -16.14519 -15.93651 -15.71887 -14.65485 -14.44799 -14.32132 -13.84071 -13.69151 -13.61506 -13.27992 -13.19131 -13.04842 -12.69774 -12.50133 -12.35945 -12.22542 -12.04812 -11.72811 -11.52220 -11.33815 -11.24658 -10.99047 -10.93558 -10.76846 -10.54621 -10.53806 -10.43919 -10.36494 -10.08262 -10.00125 -9.50607 -9.21049 -8.53171 -8.26637 -7.67453 -7.46309 -6.45961 -4.16321 0.87801 1.36350 2.40241 2.66733 3.03659 3.06309 3.17721 3.20046 3.32713 3.81684 4.04274 4.40804 4.75066 4.89790 4.92805 5.09649 5.16102 5.23642 5.25545 5.30440 5.32432 5.35760 5.48382 5.63255 5.68013 5.71388 5.75620 5.81326 5.88463 5.97685 6.06857 6.23446 6.28069 6.35223 6.36098 6.45900 6.55539 6.59741 6.72890 6.78437 6.83443 6.87923 7.04652 7.20452 7.27253 7.35641 7.42616 7.79089 8.17613 8.26918 8.98300 9.40330 9.83657 10.54837 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.003665 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.706514 B = 7637.294826 C = 9046.452434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.127 3.873 7 N -0.439 5.439 8 C -0.349 4.349 9 H 0.094 0.906 10 C 0.045 3.955 11 N -0.850 5.850 12 Si 0.911 3.089 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.474 3.526 17 O -0.592 6.592 18 C -0.090 4.090 19 C -0.024 4.024 20 C -0.122 4.122 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.049 4.049 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.086 4.086 28 C -0.037 4.037 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.063 0.937 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.475 -4.412 -6.375 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.003 3.997 7 N -0.157 5.157 8 C -0.476 4.476 9 H 0.112 0.888 10 C -0.162 4.162 11 N -0.486 5.486 12 Si 0.737 3.263 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.205 1.205 16 C 0.263 3.737 17 O -0.477 6.477 18 C -0.130 4.130 19 C -0.025 4.025 20 C -0.140 4.140 21 C -0.125 4.125 22 C -0.143 4.143 23 C -0.049 4.049 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.103 4.103 28 C -0.037 4.037 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.810 -4.009 -6.764 8.737 hybrid contribution -0.143 -0.075 1.034 1.046 sum 3.668 -4.084 -5.730 7.935 Atomic orbital electron populations 1.23164 0.77388 1.03013 1.02335 1.86539 1.22736 1.34445 1.84676 1.24083 0.92407 0.80884 0.71733 1.90651 1.67270 1.36216 1.45029 1.21907 0.85839 1.03488 1.05125 1.21194 0.82170 0.90831 1.05499 1.43418 1.04417 1.62882 1.05024 1.19485 1.05523 1.32642 0.89959 0.88850 1.25367 0.96841 0.93542 1.00480 1.69928 1.27149 1.18448 1.33063 0.86131 0.78921 0.78634 0.82600 1.19023 1.20620 1.20470 1.20225 0.88771 0.80908 0.83765 1.90583 1.70355 1.55149 1.31616 1.20518 0.95066 1.04853 0.92566 1.19476 0.95157 0.92529 0.95311 1.20641 1.00479 0.97146 0.95711 1.20737 0.99399 0.98256 0.94122 1.20857 1.01954 0.92031 0.99455 1.18030 0.99540 0.93962 0.93362 1.20902 1.01364 0.92202 0.99095 1.20780 0.99444 0.97541 0.95690 1.20803 1.00841 0.98807 0.94305 1.21221 0.96977 0.91671 1.00473 1.17921 0.98954 0.93695 0.93134 0.88629 0.92172 0.92182 0.88428 0.87852 0.86363 0.91876 0.91806 0.89006 0.88244 0.86303 0.86456 0.86222 0.86150 0.86517 0.86264 0.85143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.06 10.57 -39.25 -0.41 -6.48 16 3 C 0.47 9.06 7.96 36.00 0.29 9.35 16 4 O -0.50 -11.12 15.73 -18.75 -0.29 -11.42 16 5 C -0.12 -2.48 6.11 -27.88 -0.17 -2.65 16 6 C 0.13 3.01 4.21 -4.04 -0.02 3.00 16 7 N -0.44 -10.39 2.55 -114.81 -0.29 -10.68 16 8 C -0.35 -8.17 8.70 -14.93 -0.13 -8.30 16 9 H 0.09 2.05 6.98 -52.49 -0.37 1.68 16 10 C 0.04 1.07 4.94 -17.47 -0.09 0.98 16 11 N -0.85 -21.78 11.31 55.50 0.63 -21.15 16 12 Si 0.91 18.43 29.60 -169.99 -5.03 13.40 16 13 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 14 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 16 C 0.47 10.90 7.60 -10.98 -0.08 10.82 16 17 O -0.59 -15.15 15.69 5.55 0.09 -15.06 16 18 C -0.09 -1.72 3.89 -29.03 -0.11 -1.84 16 19 C -0.02 -0.44 4.38 -104.53 -0.46 -0.90 16 20 C -0.12 -1.97 9.57 -39.93 -0.38 -2.35 16 21 C -0.11 -1.52 9.95 -39.93 -0.40 -1.92 16 22 C -0.12 -1.78 9.77 -39.49 -0.39 -2.17 16 23 C -0.05 -0.80 5.74 -106.84 -0.61 -1.41 16 24 C -0.12 -1.65 9.77 -39.49 -0.39 -2.03 16 25 C -0.12 -1.60 9.95 -39.93 -0.40 -2.00 16 26 C -0.13 -2.00 9.95 -39.93 -0.40 -2.39 16 27 C -0.09 -1.53 9.28 -39.48 -0.37 -1.90 16 28 C -0.04 -0.67 5.74 -106.83 -0.61 -1.29 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 31 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 33 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.12 3.05 5.30 -51.93 -0.28 2.77 16 35 H 0.06 1.63 7.52 -51.93 -0.39 1.24 16 36 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 37 H 0.09 1.57 7.54 -51.93 -0.39 1.18 16 38 H 0.10 1.87 6.66 -51.93 -0.35 1.52 16 39 H 0.12 1.71 8.05 -52.49 -0.42 1.29 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.13 2.44 6.49 -52.48 -0.34 2.10 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -30.65 382.64 -9.09 -39.75 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.89 Total: 11.37 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -3.64 Total: -5.49 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.33 Total: -31.84 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.62 Total: -32.96 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.65 -9.09 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871338182.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.238 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds