Wall clock time and date at job start Sat Apr 11 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34238 * 116.99773 * 2 1 4 4 O 1.20823 * 119.99816 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99561 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46586 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47150 * 179.97438 * 6 5 3 8 8 C 1.36935 * 120.00317 * 275.95860 * 7 6 5 9 9 H 1.08001 * 119.99613 * 37.39973 * 8 7 6 10 10 C 1.38809 * 120.00425 * 217.40564 * 8 7 6 11 11 N 1.31624 * 119.99716 * 18.60772 * 10 8 7 12 12 Si 1.86800 * 120.00069 * 198.61009 * 10 8 7 13 13 H 1.48502 * 109.47056 * 90.00031 * 12 10 8 14 14 H 1.48498 * 109.46819 * 209.99697 * 12 10 8 15 15 H 1.48500 * 109.47248 * 329.99602 * 12 10 8 16 16 C 1.46498 * 119.99769 * 95.95115 * 7 6 5 17 17 C 1.50699 * 109.47596 * 269.99930 * 16 7 6 18 18 C 1.38659 * 120.02652 * 90.00161 * 17 16 7 19 19 O 1.35899 * 120.01363 * 0.02562 * 18 17 16 20 20 C 1.42897 * 116.99965 * 180.02562 * 19 18 17 21 21 C 1.38727 * 119.97302 * 180.02562 * 18 17 16 22 22 C 1.38406 * 120.02567 * 0.02562 * 21 18 17 23 23 F 1.35100 * 119.96415 * 179.72186 * 22 21 18 24 24 C 1.38403 * 120.06008 * 359.97438 * 22 21 18 25 25 C 1.38646 * 120.03348 * 270.02391 * 17 16 7 26 26 O 1.35889 * 120.01657 * 359.95950 * 25 17 16 27 27 C 1.42895 * 117.00108 * 179.97438 * 26 25 17 28 28 H 1.08997 * 109.47121 * 299.99546 * 1 2 3 29 29 H 1.09002 * 109.47220 * 59.99974 * 1 2 3 30 30 H 1.08995 * 109.46957 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47368 * 60.00484 * 5 3 2 32 32 H 1.09003 * 109.47146 * 299.99664 * 5 3 2 33 33 H 1.09004 * 109.47720 * 59.99771 * 6 5 3 34 34 H 1.09000 * 109.47234 * 299.99453 * 6 5 3 35 35 H 0.97001 * 119.99639 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.46879 * 150.00516 * 16 7 6 37 37 H 1.08995 * 109.47275 * 30.00922 * 16 7 6 38 38 H 1.09002 * 109.46911 * 60.00731 * 20 19 18 39 39 H 1.08997 * 109.47068 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47408 * 300.00427 * 20 19 18 41 41 H 1.08001 * 119.98727 * 179.97438 * 21 18 17 42 42 H 1.08005 * 119.98146 * 179.97438 * 24 22 21 43 43 H 1.09001 * 109.47609 * 60.00157 * 27 26 25 44 44 H 1.09005 * 109.47427 * 179.97438 * 27 26 25 45 45 H 1.09003 * 109.47520 * 299.99759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8189 0.0002 8 6 6.1533 2.7312 1.1796 9 1 5.8145 2.0600 1.9549 10 6 7.2884 3.5051 1.3788 11 7 7.5022 4.5650 0.6283 12 14 8.5123 3.0422 2.7119 13 1 9.5373 2.1281 2.1470 14 1 9.1724 4.2692 3.2254 15 1 7.8002 2.3613 3.8229 16 6 6.1876 2.9893 -1.2616 17 6 6.5102 1.6367 -1.8424 18 6 5.6172 1.0219 -2.7068 19 8 4.4507 1.6391 -3.0312 20 6 3.5780 0.9475 -3.9267 21 6 5.9150 -0.2236 -3.2404 22 6 7.1027 -0.8526 -2.9098 23 9 7.3889 -2.0680 -3.4257 24 6 7.9949 -0.2401 -2.0471 25 6 7.6999 1.0056 -1.5125 26 8 8.5763 1.6069 -0.6658 27 6 9.7817 0.8990 -0.3697 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9557 0.7811 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 3.6107 3.2358 0.8906 34 1 3.6101 3.2368 -0.8894 35 1 8.2955 5.1056 0.7673 36 1 7.1128 3.5359 -1.0783 37 1 5.5686 3.5479 -1.9635 38 1 3.2914 -0.0087 -3.4887 39 1 2.6857 1.5486 -4.1011 40 1 4.0908 0.7746 -4.8728 41 1 5.2195 -0.7028 -3.9134 42 1 8.9212 -0.7323 -1.7897 43 1 10.3372 0.7256 -1.2914 44 1 10.3907 1.4889 0.3154 45 1 9.5373 -0.0574 0.0926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877711563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:22 Heat of formation + Delta-G solvation = -149.139776 kcal Electronic energy + Delta-G solvation = -32080.893180 eV Core-core repulsion = 27594.451674 eV Total energy + Delta-G solvation = -4486.441506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.66342 -40.19749 -39.96368 -38.57407 -36.42169 -35.89880 -35.40998 -32.00388 -31.30766 -29.42170 -29.30087 -27.58430 -27.40115 -26.55119 -25.23862 -24.17114 -21.88746 -21.67991 -20.62187 -19.83928 -18.46027 -17.31003 -17.02001 -16.71472 -16.19877 -16.14970 -15.96246 -15.72431 -15.66802 -15.19286 -15.09830 -14.93124 -14.59588 -14.15432 -13.91193 -13.87557 -13.49194 -13.14326 -13.02532 -12.55292 -12.39244 -12.14129 -11.97412 -11.93935 -11.50842 -11.44345 -11.24974 -11.17344 -11.05467 -10.73822 -10.60217 -10.54265 -10.47429 -10.10742 -10.08903 -9.96225 -9.86160 -9.78124 -8.41144 -7.90569 -7.62963 -6.55747 -5.72152 -3.30676 1.60305 1.73795 2.63123 3.07988 3.26635 3.37286 3.45100 3.46661 4.00075 4.09500 4.52670 4.55188 5.14309 5.17032 5.19981 5.22302 5.24116 5.26871 5.29499 5.35685 5.41123 5.50060 5.53391 5.56708 5.58837 5.59757 5.78476 5.86375 5.90305 6.07279 6.33366 6.36285 6.46497 6.50237 6.65125 6.70188 6.79742 6.82502 7.10411 7.17406 7.68168 7.80293 7.88647 7.95251 8.14523 8.58439 9.24252 9.86455 10.43019 11.29264 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008516 B = 0.006005 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.114937 B = 4661.341004 C = 6802.945310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.369 6.369 3 C 0.463 3.537 4 O -0.512 6.512 5 C -0.133 4.133 6 C 0.166 3.834 7 N -0.565 5.565 8 C -0.262 4.262 9 H 0.056 0.944 10 C 0.036 3.964 11 N -0.880 5.880 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.295 1.295 15 H -0.282 1.282 16 C 0.187 3.813 17 C -0.147 4.147 18 C 0.180 3.820 19 O -0.297 6.297 20 C 0.026 3.974 21 C -0.286 4.286 22 C 0.150 3.850 23 F -0.146 7.146 24 C -0.285 4.285 25 C 0.207 3.793 26 O -0.263 6.263 27 C 0.024 3.976 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.254 0.746 36 H 0.117 0.883 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.048 0.952 44 H 0.097 0.903 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 -10.079 -7.287 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.286 6.286 3 C 0.307 3.693 4 O -0.399 6.399 5 C -0.173 4.173 6 C 0.039 3.961 7 N -0.283 5.283 8 C -0.391 4.391 9 H 0.074 0.926 10 C -0.165 4.165 11 N -0.521 5.521 12 Si 0.723 3.277 13 H -0.208 1.208 14 H -0.221 1.221 15 H -0.208 1.208 16 C 0.061 3.939 17 C -0.151 4.151 18 C 0.133 3.867 19 O -0.209 6.209 20 C -0.070 4.070 21 C -0.306 4.306 22 C 0.131 3.869 23 F -0.124 7.124 24 C -0.305 4.305 25 C 0.158 3.842 26 O -0.174 6.174 27 C -0.072 4.072 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.135 0.865 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.133 -9.244 -7.095 12.364 hybrid contribution 0.633 -1.362 0.353 1.543 sum -3.500 -10.606 -6.742 13.046 Atomic orbital electron populations 1.23146 0.77684 1.02933 1.02207 1.86585 1.22540 1.34840 1.84611 1.24511 0.92799 0.80701 0.71322 1.90616 1.67431 1.36289 1.45591 1.22451 0.84434 1.05598 1.04845 1.20613 0.85648 0.89328 1.00537 1.43722 0.98778 1.83318 1.02492 1.18916 1.08338 1.18071 0.93757 0.92588 1.24968 1.00059 0.94152 0.97343 1.69890 1.27236 1.14158 1.40843 0.86521 0.82097 0.77460 0.81654 1.20757 1.22120 1.20776 1.19897 1.00615 0.88006 0.85359 1.19875 0.91381 1.03854 1.00008 1.18132 0.85836 0.89513 0.93177 1.86199 1.27596 1.45053 1.62062 1.23039 0.93407 0.97997 0.92514 1.20851 1.00089 0.98487 1.11148 1.16827 0.94169 0.80692 0.95260 1.91443 1.93729 1.41806 1.85447 1.20984 1.03319 0.98691 1.07526 1.18145 0.89249 0.88916 0.87840 1.86470 1.28192 1.43494 1.59198 1.23099 0.85866 0.97842 1.00371 0.92224 0.92312 0.88776 0.88631 0.88540 0.92916 0.93126 0.93572 0.86536 0.94199 0.92903 0.88490 0.92811 0.85128 0.84998 0.93355 0.88461 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.65 10.57 -39.28 -0.42 -6.06 16 3 C 0.46 8.18 7.96 36.01 0.29 8.47 16 4 O -0.51 -10.07 15.73 -18.75 -0.29 -10.37 16 5 C -0.13 -2.48 6.10 -27.88 -0.17 -2.65 16 6 C 0.17 3.59 5.01 -4.04 -0.02 3.57 16 7 N -0.57 -13.50 2.42 -174.61 -0.42 -13.93 16 8 C -0.26 -6.78 9.47 -15.06 -0.14 -6.92 16 9 H 0.06 1.48 7.90 -52.49 -0.41 1.06 16 10 C 0.04 0.94 4.29 -17.43 -0.07 0.86 16 11 N -0.88 -23.99 11.28 55.49 0.63 -23.37 16 12 Si 0.89 20.62 29.59 -169.99 -5.03 15.59 16 13 H -0.28 -6.06 5.95 56.52 0.34 -5.73 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 16 C 0.19 4.30 5.00 -5.20 -0.03 4.27 16 17 C -0.15 -2.96 5.47 -104.32 -0.57 -3.53 16 18 C 0.18 3.17 5.25 -39.25 -0.21 2.96 16 19 O -0.30 -4.86 8.55 -19.42 -0.17 -5.03 16 20 C 0.03 0.30 9.81 101.05 0.99 1.29 16 21 C -0.29 -4.53 9.01 -39.34 -0.35 -4.89 16 22 C 0.15 2.47 7.29 -39.46 -0.29 2.18 16 23 F -0.15 -2.28 17.27 2.25 0.04 -2.24 16 24 C -0.29 -4.83 9.01 -39.34 -0.35 -5.18 16 25 C 0.21 4.02 6.65 -39.25 -0.26 3.76 16 26 O -0.26 -5.34 8.79 -19.39 -0.17 -5.51 16 27 C 0.02 0.37 9.67 101.05 0.98 1.35 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.77 5.44 -51.93 -0.28 1.48 16 32 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.05 1.21 8.05 -51.93 -0.42 0.79 16 34 H 0.05 1.09 7.79 -51.93 -0.40 0.69 16 35 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.12 3.01 4.77 -51.93 -0.25 2.76 16 37 H 0.04 0.91 7.24 -51.93 -0.38 0.53 16 38 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 39 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 41 H 0.13 1.74 6.29 -52.49 -0.33 1.41 16 42 H 0.13 1.95 6.29 -52.48 -0.33 1.62 16 43 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 44 H 0.10 1.50 7.13 -51.93 -0.37 1.13 16 45 H 0.05 0.73 7.66 -51.93 -0.40 0.34 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -29.77 375.47 -5.40 -35.17 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.08 Total: 3.08 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 0.85 Total: 7.00 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.20 Total: -37.29 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.05 Total: -26.97 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.77 -5.40 -35.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877711563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.969 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds