Wall clock time and date at job start Sat Apr 11 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34238 * 116.99773 * 2 1 4 4 O 1.20823 * 119.99816 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99561 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46586 * 180.02562 * 5 3 2 7 7 N 1.46501 * 109.47150 * 179.97438 * 6 5 3 8 8 C 1.36935 * 120.00317 * 275.95860 * 7 6 5 9 9 H 1.08001 * 119.99613 * 37.39973 * 8 7 6 10 10 C 1.38809 * 120.00425 * 217.40564 * 8 7 6 11 11 N 1.31624 * 119.99716 * 18.60772 * 10 8 7 12 12 Si 1.86800 * 120.00069 * 198.61009 * 10 8 7 13 13 H 1.48502 * 109.47056 * 90.00031 * 12 10 8 14 14 H 1.48498 * 109.46819 * 209.99697 * 12 10 8 15 15 H 1.48500 * 109.47248 * 329.99602 * 12 10 8 16 16 C 1.46498 * 119.99769 * 95.95115 * 7 6 5 17 17 C 1.50699 * 109.47596 * 269.99930 * 16 7 6 18 18 C 1.38659 * 120.02652 * 90.00161 * 17 16 7 19 19 O 1.35899 * 120.01363 * 0.02562 * 18 17 16 20 20 C 1.42897 * 116.99965 * 180.02562 * 19 18 17 21 21 C 1.38727 * 119.97302 * 180.02562 * 18 17 16 22 22 C 1.38406 * 120.02567 * 0.02562 * 21 18 17 23 23 F 1.35100 * 119.96415 * 179.72186 * 22 21 18 24 24 C 1.38403 * 120.06008 * 359.97438 * 22 21 18 25 25 C 1.38646 * 120.03348 * 270.02391 * 17 16 7 26 26 O 1.35889 * 120.01657 * 359.95950 * 25 17 16 27 27 C 1.42895 * 117.00108 * 179.97438 * 26 25 17 28 28 H 1.08997 * 109.47121 * 299.99546 * 1 2 3 29 29 H 1.09002 * 109.47220 * 59.99974 * 1 2 3 30 30 H 1.08995 * 109.46957 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47368 * 60.00484 * 5 3 2 32 32 H 1.09003 * 109.47146 * 299.99664 * 5 3 2 33 33 H 1.09004 * 109.47720 * 59.99771 * 6 5 3 34 34 H 1.09000 * 109.47234 * 299.99453 * 6 5 3 35 35 H 0.97001 * 119.99639 * 180.02562 * 11 10 8 36 36 H 1.09004 * 109.46879 * 150.00516 * 16 7 6 37 37 H 1.08995 * 109.47275 * 30.00922 * 16 7 6 38 38 H 1.09002 * 109.46911 * 60.00731 * 20 19 18 39 39 H 1.08997 * 109.47068 * 179.97438 * 20 19 18 40 40 H 1.08998 * 109.47408 * 300.00427 * 20 19 18 41 41 H 1.08001 * 119.98727 * 179.97438 * 21 18 17 42 42 H 1.08005 * 119.98146 * 179.97438 * 24 22 21 43 43 H 1.09001 * 109.47609 * 60.00157 * 27 26 25 44 44 H 1.09005 * 109.47427 * 179.97438 * 27 26 25 45 45 H 1.09003 * 109.47520 * 299.99759 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8189 0.0002 8 6 6.1533 2.7312 1.1796 9 1 5.8145 2.0600 1.9549 10 6 7.2884 3.5051 1.3788 11 7 7.5022 4.5650 0.6283 12 14 8.5123 3.0422 2.7119 13 1 9.5373 2.1281 2.1470 14 1 9.1724 4.2692 3.2254 15 1 7.8002 2.3613 3.8229 16 6 6.1876 2.9893 -1.2616 17 6 6.5102 1.6367 -1.8424 18 6 5.6172 1.0219 -2.7068 19 8 4.4507 1.6391 -3.0312 20 6 3.5780 0.9475 -3.9267 21 6 5.9150 -0.2236 -3.2404 22 6 7.1027 -0.8526 -2.9098 23 9 7.3889 -2.0680 -3.4257 24 6 7.9949 -0.2401 -2.0471 25 6 7.6999 1.0056 -1.5125 26 8 8.5763 1.6069 -0.6658 27 6 9.7817 0.8990 -0.3697 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9557 0.7811 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 3.6107 3.2358 0.8906 34 1 3.6101 3.2368 -0.8894 35 1 8.2955 5.1056 0.7673 36 1 7.1128 3.5359 -1.0783 37 1 5.5686 3.5479 -1.9635 38 1 3.2914 -0.0087 -3.4887 39 1 2.6857 1.5486 -4.1011 40 1 4.0908 0.7746 -4.8728 41 1 5.2195 -0.7028 -3.9134 42 1 8.9212 -0.7323 -1.7897 43 1 10.3372 0.7256 -1.2914 44 1 10.3907 1.4889 0.3154 45 1 9.5373 -0.0574 0.0926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877711563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:21 Heat of formation + Delta-G solvation = -165.677007 kcal Electronic energy + Delta-G solvation = -32081.610288 eV Core-core repulsion = 27594.451674 eV Total energy + Delta-G solvation = -4487.158614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.92407 -41.55600 -41.30821 -39.87272 -37.91146 -37.31846 -36.90250 -33.83432 -32.84047 -30.98439 -30.61120 -28.69215 -28.53415 -27.83642 -26.89083 -25.77581 -23.39950 -22.96018 -22.12859 -21.43024 -19.74495 -18.80983 -18.42216 -18.29710 -17.56301 -17.48830 -17.24129 -16.99857 -16.91177 -16.63046 -16.35230 -16.31028 -16.22915 -15.51968 -15.33555 -15.27458 -15.06176 -14.61642 -14.38110 -13.87211 -13.81345 -13.58085 -13.29909 -13.11031 -12.92447 -12.80197 -12.73306 -12.57116 -12.39594 -12.30121 -12.24092 -12.10598 -11.78662 -11.77768 -11.66867 -11.56294 -11.46608 -11.33515 -10.35950 -9.18696 -9.05592 -8.46952 -7.67671 -5.31193 0.25013 0.41816 1.21645 1.52163 1.54065 1.61169 1.82780 2.09266 2.58961 2.69486 2.86272 3.23090 3.46954 3.82543 3.99732 4.02873 4.03540 4.09147 4.11265 4.24547 4.31894 4.34527 4.36082 4.38752 4.40519 4.42408 4.47415 4.70495 4.70783 4.73432 4.78366 4.92155 5.05932 5.07074 5.08613 5.17087 5.30032 5.44222 5.47498 5.60981 5.80150 5.98359 6.46948 6.57828 6.64961 6.78593 7.31014 7.96037 8.50672 9.30619 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008516 B = 0.006005 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.114937 B = 4661.341004 C = 6802.945310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.118 4.118 6 C 0.173 3.827 7 N -0.578 5.578 8 C -0.268 4.268 9 H 0.047 0.953 10 C 0.003 3.997 11 N -0.909 5.909 12 Si 0.936 3.064 13 H -0.257 1.257 14 H -0.303 1.303 15 H -0.284 1.284 16 C 0.200 3.800 17 C -0.177 4.177 18 C 0.188 3.812 19 O -0.317 6.317 20 C 0.015 3.985 21 C -0.279 4.279 22 C 0.157 3.843 23 F -0.137 7.137 24 C -0.284 4.284 25 C 0.196 3.804 26 O -0.297 6.297 27 C 0.016 3.984 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.044 0.956 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 -13.065 -8.406 16.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.158 4.158 6 C 0.046 3.954 7 N -0.297 5.297 8 C -0.397 4.397 9 H 0.065 0.935 10 C -0.196 4.196 11 N -0.552 5.552 12 Si 0.765 3.235 13 H -0.182 1.182 14 H -0.231 1.231 15 H -0.210 1.210 16 C 0.075 3.925 17 C -0.181 4.181 18 C 0.141 3.859 19 O -0.230 6.230 20 C -0.079 4.079 21 C -0.298 4.298 22 C 0.137 3.863 23 F -0.116 7.116 24 C -0.304 4.304 25 C 0.148 3.852 26 O -0.209 6.209 27 C -0.079 4.079 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.179 0.821 42 H 0.171 0.829 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.660 -12.284 -8.238 15.508 hybrid contribution 0.657 -0.491 0.610 1.023 sum -4.002 -12.776 -7.628 15.408 Atomic orbital electron populations 1.23543 0.75025 1.05604 1.02494 1.86541 1.24997 1.32955 1.83907 1.24073 0.92237 0.81108 0.70846 1.90612 1.67818 1.37286 1.46867 1.22059 0.85746 1.03080 1.04963 1.20455 0.84732 0.91198 0.98975 1.43813 0.99455 1.83998 1.02441 1.18984 1.08724 1.17600 0.94412 0.93547 1.25457 1.01223 0.93954 0.98964 1.70028 1.27434 1.15225 1.42493 0.85837 0.80885 0.77140 0.79606 1.18236 1.23060 1.20988 1.19494 0.98606 0.89672 0.84747 1.19660 0.93244 1.02853 1.02362 1.18073 0.85733 0.89809 0.92319 1.86188 1.27568 1.46235 1.63034 1.23381 0.93327 0.98603 0.92591 1.21057 1.00347 0.97553 1.10845 1.16897 0.94056 0.80740 0.94574 1.91471 1.93663 1.41228 1.85198 1.21100 1.04304 0.97760 1.07228 1.18261 0.89080 0.89776 0.88095 1.86416 1.29633 1.45116 1.59693 1.23314 0.84770 0.97987 1.01822 0.92337 0.91745 0.84923 0.87983 0.88900 0.95299 0.93749 0.94125 0.89571 0.95496 0.91675 0.86996 0.90829 0.82128 0.82869 0.90749 0.88709 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.46 10.57 -51.49 -0.54 -11.00 16 3 C 0.47 16.32 7.96 71.24 0.57 16.89 16 4 O -0.54 -20.97 15.73 21.97 0.35 -20.62 16 5 C -0.12 -4.41 6.10 29.85 0.18 -4.23 16 6 C 0.17 7.74 5.01 86.38 0.43 8.17 16 7 N -0.58 -28.61 2.42 -706.35 -1.71 -30.32 16 8 C -0.27 -14.31 9.47 84.03 0.80 -13.51 16 9 H 0.05 2.52 7.90 -2.91 -0.02 2.50 16 10 C 0.00 0.14 4.29 84.86 0.36 0.51 16 11 N -0.91 -51.51 11.28 21.65 0.24 -51.26 16 12 Si 0.94 42.81 29.59 68.60 2.03 44.84 16 13 H -0.26 -10.64 5.95 99.48 0.59 -10.05 16 14 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 C 0.20 9.57 5.00 85.63 0.43 10.00 16 17 C -0.18 -7.17 5.47 -19.67 -0.11 -7.28 16 18 C 0.19 6.36 5.25 22.49 0.12 6.48 16 19 O -0.32 -10.03 8.55 -92.41 -0.79 -10.82 16 20 C 0.02 0.31 9.81 113.37 1.11 1.42 16 21 C -0.28 -7.98 9.01 22.43 0.20 -7.78 16 22 C 0.16 4.68 7.29 22.35 0.16 4.84 16 23 F -0.14 -3.77 17.27 44.97 0.78 -3.00 16 24 C -0.28 -8.99 9.01 22.43 0.20 -8.78 16 25 C 0.20 7.50 6.65 22.48 0.15 7.65 16 26 O -0.30 -12.04 8.79 -92.30 -0.81 -12.86 16 27 C 0.02 0.47 9.67 113.37 1.10 1.57 16 28 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.10 3.69 5.44 -2.39 -0.01 3.68 16 32 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 33 H 0.03 1.39 8.05 -2.39 -0.02 1.37 16 34 H 0.04 2.00 7.79 -2.39 -0.02 1.98 16 35 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 36 H 0.09 4.69 4.77 -2.38 -0.01 4.67 16 37 H 0.03 1.29 7.24 -2.39 -0.02 1.27 16 38 H 0.06 1.19 7.66 -2.39 -0.02 1.17 16 39 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 1.23 7.66 -2.39 -0.02 1.21 16 41 H 0.16 3.57 6.29 -2.91 -0.02 3.55 16 42 H 0.15 4.07 6.29 -2.91 -0.02 4.05 16 43 H 0.07 1.78 7.66 -2.39 -0.02 1.77 16 44 H 0.09 2.82 7.13 -2.38 -0.02 2.80 16 45 H 0.06 1.70 7.66 -2.39 -0.02 1.69 16 Total: -1.00 -66.35 375.47 7.35 -59.00 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.91 Total: 18.37 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.90 Total: 17.67 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.47 Total: -81.58 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -1.80 Total: -55.30 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.78 Total: -3.00 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -66.35 7.35 -59.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877711563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.673 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds