Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.60866 * 2 1 4 4 C 1.53374 * 109.60947 * 239.65843 * 2 1 3 5 5 N 1.46967 * 108.63546 * 190.82904 * 4 2 1 6 6 C 1.34777 * 120.59654 * 235.21001 * 5 4 2 7 7 O 1.21593 * 119.99830 * 185.04895 * 6 5 4 8 8 N 1.34777 * 120.00012 * 5.04077 * 6 5 4 9 9 C 1.40218 * 120.00015 * 175.16723 * 8 6 5 10 10 N 1.31217 * 125.96709 * 0.02788 * 9 8 6 11 11 N 1.40070 * 108.18944 * 179.97438 * 10 9 8 12 12 C 1.46498 * 125.97643 * 180.02562 * 11 10 9 13 13 C 1.35075 * 108.04729 * 359.75726 * 11 10 9 14 14 C 1.35291 * 107.83493 * 0.39436 * 13 11 10 15 15 Cl 1.73598 * 126.06804 * 179.87255 * 14 13 11 16 16 C 1.46968 * 118.80735 * 55.48114 * 5 4 2 17 17 C 1.53807 * 108.39863 * 304.48234 * 16 5 4 18 18 H 1.09002 * 109.67092 * 169.38796 * 17 16 5 19 19 C 1.52997 * 109.74408 * 289.84731 * 17 16 5 20 20 N 1.46960 * 108.57966 * 49.63883 * 17 16 5 21 21 C 1.36938 * 120.59152 * 124.62414 * 20 17 16 22 22 H 1.08003 * 119.99662 * 218.62657 * 21 20 17 23 23 C 1.38804 * 120.00423 * 38.62582 * 21 20 17 24 24 N 1.31618 * 119.99990 * 0.27637 * 23 21 20 25 25 Si 1.86799 * 120.00516 * 180.27689 * 23 21 20 26 26 H 1.48502 * 109.47423 * 89.99961 * 25 23 21 27 27 H 1.48499 * 109.47653 * 210.00131 * 25 23 21 28 28 H 1.48507 * 109.46946 * 330.00137 * 25 23 21 29 29 H 1.09003 * 109.46571 * 180.33827 * 1 2 3 30 30 H 1.08998 * 109.46994 * 300.33576 * 1 2 3 31 31 H 1.09000 * 109.46997 * 60.34032 * 1 2 3 32 32 H 1.09011 * 109.60477 * 71.09281 * 4 2 1 33 33 H 1.08995 * 109.75625 * 310.66120 * 4 2 1 34 34 H 0.97007 * 119.99950 * 355.17612 * 8 6 5 35 35 H 1.09003 * 109.47214 * 89.97085 * 12 11 10 36 36 H 1.08998 * 109.47704 * 209.97364 * 12 11 10 37 37 H 1.09000 * 109.47498 * 329.97756 * 12 11 10 38 38 H 1.07995 * 126.08248 * 180.24592 * 13 11 10 39 39 H 1.09000 * 109.60663 * 64.26927 * 16 5 4 40 40 H 1.09000 * 109.60525 * 184.77289 * 16 5 4 41 41 H 1.08992 * 109.47476 * 179.15730 * 19 17 16 42 42 H 1.09001 * 109.47370 * 299.16185 * 19 17 16 43 43 H 1.09003 * 109.46872 * 59.16064 * 19 17 16 44 44 H 0.97005 * 120.00589 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7298 -1.2469 5 7 3.4909 -0.9472 -1.1003 6 6 4.3493 -0.5101 -2.0430 7 8 5.5328 -0.7753 -1.9573 8 7 3.8958 0.2207 -3.0806 9 6 4.8001 0.7609 -4.0060 10 7 6.1053 0.6286 -3.9755 11 7 6.6401 1.3148 -5.0733 12 6 8.0611 1.4193 -5.4137 13 6 5.6160 1.8584 -5.7664 14 6 4.4672 1.5377 -5.1279 15 17 2.8653 1.9983 -5.6133 16 6 3.9836 -1.6551 0.0896 17 6 3.4693 -0.9204 1.3392 18 1 3.6603 -1.5257 2.2253 19 6 4.1801 0.4276 1.4753 20 7 2.0233 -0.7030 1.1926 21 6 1.1511 -1.1478 2.1500 22 1 0.1989 -1.5670 1.8600 23 6 1.4907 -1.0601 3.4930 24 7 2.6488 -0.5443 3.8466 25 14 0.3042 -1.6740 4.7986 26 1 0.5753 -3.1068 5.0795 27 1 0.4842 -0.8831 6.0425 28 1 -1.0904 -1.5203 4.3117 29 1 -0.3632 -1.0277 0.0061 30 1 -0.3633 0.5190 0.8869 31 1 -0.3633 0.5085 -0.8930 32 1 1.8541 -0.1219 -2.1314 33 1 1.5388 -1.6900 -1.3469 34 1 2.9437 0.3732 -3.1871 35 1 8.3401 0.5923 -6.0666 36 1 8.2436 2.3640 -5.9259 37 1 8.6571 1.3793 -4.5020 38 1 5.6997 2.4465 -6.6683 39 1 3.6121 -2.6799 0.0856 40 1 5.0736 -1.6586 0.0880 41 1 3.8018 0.9508 2.3534 42 1 5.2522 0.2637 1.5839 43 1 3.9926 1.0286 0.5855 44 1 2.8861 -0.4826 4.7851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881172651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = 98.275164 kcal Electronic energy + Delta-G solvation = -28600.331691 eV Core-core repulsion = 24617.540779 eV Total energy + Delta-G solvation = -3982.790912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.136 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -41.49656 -39.91316 -37.48689 -36.59822 -34.96501 -34.03015 -32.68527 -32.22779 -31.08497 -30.03791 -27.92113 -26.77825 -26.23996 -25.20078 -23.66759 -22.09322 -21.52015 -20.71050 -19.60703 -18.63122 -18.24529 -17.33429 -16.23379 -16.01263 -15.86585 -15.19339 -14.98712 -14.72232 -14.45454 -14.09464 -13.96141 -13.59858 -13.58220 -13.32271 -13.05211 -12.85991 -12.78248 -11.94748 -11.80482 -11.69524 -11.52738 -11.45609 -11.21185 -10.93183 -10.86826 -10.77132 -10.60739 -10.57752 -10.54402 -10.13245 -10.02347 -9.78585 -9.74102 -9.40882 -8.91625 -8.44560 -8.32570 -7.99811 -6.48117 -5.81225 -3.38508 1.60365 1.75852 2.39159 2.43359 3.01444 3.34912 3.42527 3.42905 3.68465 4.02202 4.30919 4.44139 4.54808 4.92395 5.09328 5.11938 5.23076 5.24715 5.37330 5.55079 5.61892 5.65179 5.83690 6.03091 6.18251 6.27793 6.32458 6.38980 6.48240 6.60825 6.64224 6.73345 6.83121 6.91213 6.98427 7.02387 7.08470 7.14843 7.59012 7.66983 7.73872 7.85311 8.21696 8.50079 8.87237 9.21371 9.77724 10.40394 11.24709 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.003067 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.490628 B = 9127.458491 C =10084.773738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.155 3.845 3 H 0.032 0.968 4 C 0.097 3.903 5 N -0.605 5.605 6 C 0.699 3.301 7 O -0.555 6.555 8 N -0.652 5.652 9 C 0.339 3.661 10 N -0.260 5.260 11 N -0.371 5.371 12 C 0.108 3.892 13 C 0.088 3.912 14 C -0.210 4.210 15 Cl -0.043 7.043 16 C 0.109 3.891 17 C 0.180 3.820 18 H 0.108 0.892 19 C -0.136 4.136 20 N -0.580 5.580 21 C -0.257 4.257 22 H 0.066 0.934 23 C 0.015 3.985 24 N -0.896 5.896 25 Si 0.901 3.099 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.415 0.585 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.185 0.815 39 H 0.058 0.942 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.027 0.973 43 H 0.019 0.981 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 5.331 -19.993 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.048 3.952 3 H 0.049 0.951 4 C -0.028 4.028 5 N -0.341 5.341 6 C 0.400 3.600 7 O -0.429 6.429 8 N -0.308 5.308 9 C 0.080 3.920 10 N -0.089 5.089 11 N -0.154 5.154 12 C -0.033 4.033 13 C -0.061 4.061 14 C -0.252 4.252 15 Cl -0.015 7.015 16 C -0.014 4.014 17 C 0.073 3.927 18 H 0.126 0.874 19 C -0.195 4.195 20 N -0.303 5.303 21 C -0.386 4.386 22 H 0.084 0.916 23 C -0.185 4.185 24 N -0.539 5.539 25 Si 0.731 3.269 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.202 0.798 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.174 4.656 -19.079 20.586 hybrid contribution -1.956 0.303 0.121 1.983 sum 4.218 4.959 -18.958 20.045 Atomic orbital electron populations 1.21751 0.95183 1.01712 1.00560 1.20779 0.93230 0.93975 0.87254 0.95071 1.22391 0.80533 1.00749 0.99164 1.47219 1.06042 1.59419 1.21425 1.15851 0.85494 0.79167 0.79489 1.90971 1.14295 1.60991 1.76640 1.42342 1.08866 1.54307 1.25320 1.18772 0.89141 0.94608 0.89513 1.78337 1.06011 1.19273 1.05278 1.48245 1.06638 1.40545 1.19923 1.21889 0.75608 1.02949 1.02883 1.22074 0.86138 0.99391 0.98517 1.20310 0.87941 1.15197 1.01724 1.98320 1.20222 1.91719 1.91197 1.22586 0.99512 0.94944 0.84392 1.20868 0.83035 0.94867 0.93899 0.87439 1.21960 0.97571 0.99347 1.00633 1.44014 1.01808 1.64304 1.20168 1.19043 0.99901 1.34458 0.85222 0.91643 1.25380 0.96996 0.98402 0.97746 1.69898 1.20847 1.47136 1.15970 0.86336 0.80995 0.78095 0.81516 1.21450 1.21710 1.20445 0.92551 0.91517 0.94215 0.92413 0.91273 0.74482 0.90498 0.89269 0.88779 0.79829 0.92329 0.90042 0.90632 0.95387 0.96190 0.93507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.05 37.16 0.30 -2.01 16 2 C 0.16 3.02 3.22 -67.48 -0.22 2.80 16 3 H 0.03 0.66 7.41 -51.93 -0.38 0.27 16 4 C 0.10 1.62 5.90 -3.59 -0.02 1.60 16 5 N -0.61 -11.44 2.58 -177.93 -0.46 -11.90 16 6 C 0.70 13.59 8.26 -86.92 -0.72 12.87 16 7 O -0.56 -12.59 14.50 5.28 0.08 -12.51 16 8 N -0.65 -10.61 5.37 -15.48 -0.08 -10.69 16 9 C 0.34 5.39 7.81 -154.31 -1.21 4.18 16 10 N -0.26 -4.38 10.81 31.46 0.34 -4.04 16 11 N -0.37 -4.29 4.01 -68.14 -0.27 -4.57 16 12 C 0.11 0.71 11.47 59.85 0.69 1.40 16 13 C 0.09 0.86 11.46 -17.17 -0.20 0.66 16 14 C -0.21 -2.60 6.67 -39.80 -0.27 -2.87 16 15 Cl -0.04 -0.45 29.18 -51.86 -1.51 -1.96 16 16 C 0.11 2.24 5.99 -3.37 -0.02 2.22 16 17 C 0.18 4.15 2.33 -67.26 -0.16 3.99 16 18 H 0.11 2.78 6.24 -51.93 -0.32 2.46 16 19 C -0.14 -3.15 8.93 37.16 0.33 -2.82 16 20 N -0.58 -13.45 2.66 -156.77 -0.42 -13.87 16 21 C -0.26 -6.46 8.32 -15.06 -0.13 -6.59 16 22 H 0.07 1.62 6.48 -52.48 -0.34 1.28 16 23 C 0.01 0.38 5.23 -17.43 -0.09 0.29 16 24 N -0.90 -24.32 9.75 55.49 0.54 -23.78 16 25 Si 0.90 20.74 29.55 -169.99 -5.02 15.72 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.06 0.97 7.30 -51.93 -0.38 0.59 16 30 H 0.07 1.27 7.75 -51.93 -0.40 0.86 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.79 5.55 -51.92 -0.29 0.50 16 33 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 34 H 0.41 5.74 6.15 -40.82 -0.25 5.49 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.72 7.00 -51.93 -0.36 1.36 16 41 H 0.07 1.93 6.99 -51.93 -0.36 1.57 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.02 0.44 7.02 -51.93 -0.36 0.08 16 44 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -32.67 364.61 -9.00 -41.67 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.98 Total: 4.69 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: -1.70 Total: 15.73 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -0.35 Total: -68.83 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.67 -9.00 -41.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881172651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.944 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.53 seconds