Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.60866 * 2 1 4 4 C 1.53374 * 109.60947 * 239.65843 * 2 1 3 5 5 N 1.46967 * 108.63546 * 190.82904 * 4 2 1 6 6 C 1.34777 * 120.59654 * 235.21001 * 5 4 2 7 7 O 1.21593 * 119.99830 * 185.04895 * 6 5 4 8 8 N 1.34777 * 120.00012 * 5.04077 * 6 5 4 9 9 C 1.40218 * 120.00015 * 175.16723 * 8 6 5 10 10 N 1.31217 * 125.96709 * 0.02788 * 9 8 6 11 11 N 1.40070 * 108.18944 * 179.97438 * 10 9 8 12 12 C 1.46498 * 125.97643 * 180.02562 * 11 10 9 13 13 C 1.35075 * 108.04729 * 359.75726 * 11 10 9 14 14 C 1.35291 * 107.83493 * 0.39436 * 13 11 10 15 15 Cl 1.73598 * 126.06804 * 179.87255 * 14 13 11 16 16 C 1.46968 * 118.80735 * 55.48114 * 5 4 2 17 17 C 1.53807 * 108.39863 * 304.48234 * 16 5 4 18 18 H 1.09002 * 109.67092 * 169.38796 * 17 16 5 19 19 C 1.52997 * 109.74408 * 289.84731 * 17 16 5 20 20 N 1.46960 * 108.57966 * 49.63883 * 17 16 5 21 21 C 1.36938 * 120.59152 * 124.62414 * 20 17 16 22 22 H 1.08003 * 119.99662 * 218.62657 * 21 20 17 23 23 C 1.38804 * 120.00423 * 38.62582 * 21 20 17 24 24 N 1.31618 * 119.99990 * 0.27637 * 23 21 20 25 25 Si 1.86799 * 120.00516 * 180.27689 * 23 21 20 26 26 H 1.48502 * 109.47423 * 89.99961 * 25 23 21 27 27 H 1.48499 * 109.47653 * 210.00131 * 25 23 21 28 28 H 1.48507 * 109.46946 * 330.00137 * 25 23 21 29 29 H 1.09003 * 109.46571 * 180.33827 * 1 2 3 30 30 H 1.08998 * 109.46994 * 300.33576 * 1 2 3 31 31 H 1.09000 * 109.46997 * 60.34032 * 1 2 3 32 32 H 1.09011 * 109.60477 * 71.09281 * 4 2 1 33 33 H 1.08995 * 109.75625 * 310.66120 * 4 2 1 34 34 H 0.97007 * 119.99950 * 355.17612 * 8 6 5 35 35 H 1.09003 * 109.47214 * 89.97085 * 12 11 10 36 36 H 1.08998 * 109.47704 * 209.97364 * 12 11 10 37 37 H 1.09000 * 109.47498 * 329.97756 * 12 11 10 38 38 H 1.07995 * 126.08248 * 180.24592 * 13 11 10 39 39 H 1.09000 * 109.60663 * 64.26927 * 16 5 4 40 40 H 1.09000 * 109.60525 * 184.77289 * 16 5 4 41 41 H 1.08992 * 109.47476 * 179.15730 * 19 17 16 42 42 H 1.09001 * 109.47370 * 299.16185 * 19 17 16 43 43 H 1.09003 * 109.46872 * 59.16064 * 19 17 16 44 44 H 0.97005 * 120.00589 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7298 -1.2469 5 7 3.4909 -0.9472 -1.1003 6 6 4.3493 -0.5101 -2.0430 7 8 5.5328 -0.7753 -1.9573 8 7 3.8958 0.2207 -3.0806 9 6 4.8001 0.7609 -4.0060 10 7 6.1053 0.6286 -3.9755 11 7 6.6401 1.3148 -5.0733 12 6 8.0611 1.4193 -5.4137 13 6 5.6160 1.8584 -5.7664 14 6 4.4672 1.5377 -5.1279 15 17 2.8653 1.9983 -5.6133 16 6 3.9836 -1.6551 0.0896 17 6 3.4693 -0.9204 1.3392 18 1 3.6603 -1.5257 2.2253 19 6 4.1801 0.4276 1.4753 20 7 2.0233 -0.7030 1.1926 21 6 1.1511 -1.1478 2.1500 22 1 0.1989 -1.5670 1.8600 23 6 1.4907 -1.0601 3.4930 24 7 2.6488 -0.5443 3.8466 25 14 0.3042 -1.6740 4.7986 26 1 0.5753 -3.1068 5.0795 27 1 0.4842 -0.8831 6.0425 28 1 -1.0904 -1.5203 4.3117 29 1 -0.3632 -1.0277 0.0061 30 1 -0.3633 0.5190 0.8869 31 1 -0.3633 0.5085 -0.8930 32 1 1.8541 -0.1219 -2.1314 33 1 1.5388 -1.6900 -1.3469 34 1 2.9437 0.3732 -3.1871 35 1 8.3401 0.5923 -6.0666 36 1 8.2436 2.3640 -5.9259 37 1 8.6571 1.3793 -4.5020 38 1 5.6997 2.4465 -6.6683 39 1 3.6121 -2.6799 0.0856 40 1 5.0736 -1.6586 0.0880 41 1 3.8018 0.9508 2.3534 42 1 5.2522 0.2637 1.5839 43 1 3.9926 1.0286 0.5855 44 1 2.8861 -0.4826 4.7851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881172651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = 78.300614 kcal Electronic energy + Delta-G solvation = -28601.197852 eV Core-core repulsion = 24617.540779 eV Total energy + Delta-G solvation = -3983.657073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.136 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.50175 -41.34050 -39.10215 -37.43109 -36.24687 -35.69719 -34.24920 -33.49308 -32.67409 -30.98496 -29.73392 -28.00942 -27.57896 -26.63238 -25.45293 -23.30411 -22.67044 -22.16572 -21.04043 -20.20438 -19.54155 -18.44804 -17.85426 -17.23177 -17.02316 -16.90010 -16.33212 -16.08969 -15.75288 -15.40861 -15.35212 -15.14969 -14.88535 -14.65371 -14.45043 -13.97795 -13.62048 -13.46635 -13.40447 -13.06376 -12.88618 -12.76933 -12.68597 -12.52355 -12.34311 -12.31084 -12.26403 -11.97609 -11.86802 -11.75992 -11.63716 -11.56839 -11.38909 -11.02134 -10.41445 -10.02387 -9.68191 -9.14528 -8.35727 -7.77243 -5.36571 0.76767 0.91621 1.28214 1.33469 1.50896 1.53172 1.60080 1.97498 2.27122 2.54798 2.74770 3.39180 3.49335 3.55168 3.93351 4.13492 4.16632 4.23954 4.35937 4.45075 4.48491 4.51222 4.55535 4.64130 4.69963 4.73146 4.75877 4.82306 4.89457 4.98483 5.10973 5.19496 5.31231 5.40153 5.51291 5.60498 5.68129 5.75275 5.79645 5.90376 5.98349 6.46037 6.55065 6.89735 7.26251 7.41576 7.89938 8.48548 9.26181 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.020132 B = 0.003067 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.490628 B = 9127.458491 C =10084.773738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.150 3.850 3 H 0.016 0.984 4 C 0.103 3.897 5 N -0.607 5.607 6 C 0.699 3.301 7 O -0.593 6.593 8 N -0.643 5.643 9 C 0.312 3.688 10 N -0.320 5.320 11 N -0.368 5.368 12 C 0.097 3.903 13 C 0.113 3.887 14 C -0.227 4.227 15 Cl -0.030 7.030 16 C 0.123 3.877 17 C 0.184 3.816 18 H 0.076 0.924 19 C -0.117 4.117 20 N -0.594 5.594 21 C -0.253 4.253 22 H 0.073 0.927 23 C -0.038 4.038 24 N -0.923 5.923 25 Si 0.959 3.041 26 H -0.289 1.289 27 H -0.302 1.302 28 H -0.268 1.268 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.425 0.575 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.080 0.920 38 H 0.236 0.764 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.018 0.982 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 6.163 -23.286 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.043 3.957 3 H 0.033 0.967 4 C -0.021 4.021 5 N -0.343 5.343 6 C 0.400 3.600 7 O -0.469 6.469 8 N -0.299 5.299 9 C 0.054 3.946 10 N -0.150 5.150 11 N -0.150 5.150 12 C -0.042 4.042 13 C -0.037 4.037 14 C -0.268 4.268 15 Cl -0.002 7.002 16 C -0.002 4.002 17 C 0.077 3.923 18 H 0.094 0.906 19 C -0.176 4.176 20 N -0.317 5.317 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.234 4.234 24 N -0.568 5.568 25 Si 0.788 3.212 26 H -0.216 1.216 27 H -0.229 1.229 28 H -0.193 1.193 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.267 0.733 35 H 0.110 0.890 36 H 0.150 0.850 37 H 0.099 0.901 38 H 0.252 0.748 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.180 5.504 -22.426 23.665 hybrid contribution -1.583 0.120 1.002 1.878 sum 3.596 5.624 -21.423 22.439 Atomic orbital electron populations 1.21671 0.93137 1.01997 1.01517 1.20971 0.94939 0.93043 0.86741 0.96663 1.22415 0.78991 1.01626 0.99036 1.47173 1.06982 1.59301 1.20829 1.15947 0.84924 0.79133 0.80004 1.90940 1.15943 1.62358 1.77673 1.42068 1.09554 1.53614 1.24689 1.19064 0.89186 0.95870 0.90510 1.78178 1.07055 1.21418 1.08312 1.48624 1.08500 1.39307 1.18617 1.22316 0.73059 1.05922 1.02938 1.22857 0.84539 0.97558 0.98742 1.20440 0.89469 1.15637 1.01250 1.98319 1.19385 1.91558 1.90924 1.22218 0.98816 0.94945 0.84178 1.20640 0.83609 0.94187 0.93880 0.90642 1.21746 0.97503 0.99328 0.99057 1.44208 1.01515 1.64904 1.21111 1.19324 1.00006 1.33361 0.85632 0.90954 1.26023 0.98287 0.99470 0.99651 1.70072 1.22297 1.48945 1.15469 0.85408 0.79785 0.77044 0.78922 1.21647 1.22855 1.19299 0.92471 0.93751 0.90139 0.88797 0.90151 0.73321 0.88998 0.84962 0.90072 0.74762 0.91811 0.91052 0.93417 0.95250 0.96268 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.05 71.98 0.58 -3.46 16 2 C 0.15 5.66 3.22 45.03 0.15 5.81 16 3 H 0.02 0.64 7.41 -2.39 -0.02 0.63 16 4 C 0.10 3.25 5.90 86.42 0.51 3.76 16 5 N -0.61 -22.68 2.58 -835.12 -2.16 -24.84 16 6 C 0.70 27.10 8.26 179.05 1.48 28.58 16 7 O -0.59 -27.44 14.50 -4.01 -0.06 -27.50 16 8 N -0.64 -20.30 5.37 -321.16 -1.72 -22.03 16 9 C 0.31 9.60 7.81 133.32 1.04 10.65 16 10 N -0.32 -10.64 10.81 -54.38 -0.59 -11.23 16 11 N -0.37 -7.70 4.01 -369.49 -1.48 -9.18 16 12 C 0.10 1.02 11.47 127.77 1.47 2.49 16 13 C 0.11 1.81 11.46 83.51 0.96 2.76 16 14 C -0.23 -5.07 6.67 22.13 0.15 -4.92 16 15 Cl -0.03 -0.55 29.18 -2.72 -0.08 -0.63 16 16 C 0.12 5.14 5.99 86.56 0.52 5.66 16 17 C 0.18 8.73 2.33 45.17 0.11 8.84 16 18 H 0.08 4.09 6.24 -2.39 -0.01 4.07 16 19 C -0.12 -5.64 8.93 71.98 0.64 -5.00 16 20 N -0.59 -27.72 2.66 -649.90 -1.73 -29.45 16 21 C -0.25 -12.78 8.32 84.03 0.70 -12.08 16 22 H 0.07 3.51 6.48 -2.91 -0.02 3.49 16 23 C -0.04 -2.00 5.23 84.86 0.44 -1.56 16 24 N -0.92 -51.96 9.75 21.65 0.21 -51.74 16 25 Si 0.96 43.30 29.55 68.60 2.03 45.33 16 26 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H 0.06 1.83 7.30 -2.39 -0.02 1.81 16 30 H 0.04 1.62 7.75 -2.39 -0.02 1.60 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.27 5.55 -2.38 -0.01 2.25 16 33 H 0.08 2.40 8.12 -2.39 -0.02 2.39 16 34 H 0.42 10.94 6.15 -92.70 -0.57 10.37 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.24 1.12 8.06 -2.91 -0.02 1.09 16 39 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.07 3.12 7.00 -2.39 -0.02 3.10 16 41 H 0.05 2.54 6.99 -2.39 -0.02 2.52 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.02 0.87 7.02 -2.39 -0.02 0.86 16 44 H 0.25 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -74.88 364.61 3.63 -71.26 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.47 Total: 18.50 kcal Atomic # 6 Polarization: 32.78 SS G_CDS: 8.74 Total: 41.52 kcal Atomic # 7 Polarization: -141.00 SS G_CDS: -7.47 Total: -148.47 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.50 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.63 kcal Total: -74.88 3.63 -71.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881172651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.560 kcal (2) G-P(sol) polarization free energy of solvation -74.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds