Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.61052 * 2 1 4 4 C 1.53368 * 109.61428 * 120.51371 * 2 1 3 5 5 N 1.46964 * 108.63423 * 70.32140 * 4 2 1 6 6 C 1.34777 * 120.59477 * 235.20755 * 5 4 2 7 7 O 1.21593 * 119.99818 * 4.95744 * 6 5 4 8 8 N 1.34776 * 120.00114 * 184.95954 * 6 5 4 9 9 C 1.40223 * 120.00152 * 174.92692 * 8 6 5 10 10 N 1.31215 * 125.96250 * 359.68300 * 9 8 6 11 11 N 1.40077 * 108.18347 * 179.88948 * 10 9 8 12 12 C 1.46501 * 125.97124 * 180.16170 * 11 10 9 13 13 C 1.35074 * 108.04861 * 0.38203 * 11 10 9 14 14 C 1.35290 * 107.83525 * 359.77692 * 13 11 10 15 15 Cl 1.73596 * 126.06875 * 180.02562 * 14 13 11 16 16 C 1.46974 * 118.81361 * 55.22633 * 5 4 2 17 17 C 1.53373 * 108.63007 * 304.77605 * 16 5 4 18 18 H 1.08999 * 109.75087 * 289.59102 * 17 16 5 19 19 C 1.53005 * 109.60556 * 169.16759 * 17 16 5 20 20 N 1.46964 * 108.63882 * 49.42271 * 17 16 5 21 21 C 1.36932 * 120.59252 * 124.78949 * 20 17 16 22 22 H 1.08007 * 120.00173 * 324.76412 * 21 20 17 23 23 C 1.38812 * 119.99867 * 144.76258 * 21 20 17 24 24 N 1.31618 * 120.00091 * 347.27659 * 23 21 20 25 25 Si 1.86800 * 120.00145 * 167.28397 * 23 21 20 26 26 H 1.48498 * 109.47432 * 89.99827 * 25 23 21 27 27 H 1.48502 * 109.47116 * 210.00001 * 25 23 21 28 28 H 1.48501 * 109.47067 * 329.99592 * 25 23 21 29 29 H 1.09000 * 109.47164 * 180.34365 * 1 2 3 30 30 H 1.09004 * 109.46951 * 300.33589 * 1 2 3 31 31 H 1.08998 * 109.47440 * 60.34140 * 1 2 3 32 32 H 1.09003 * 109.61384 * 190.06269 * 4 2 1 33 33 H 1.08994 * 109.61234 * 310.57853 * 4 2 1 34 34 H 0.97007 * 120.00181 * 354.91704 * 8 6 5 35 35 H 1.09002 * 109.46825 * 270.26115 * 12 11 10 36 36 H 1.08996 * 109.47224 * 30.26293 * 12 11 10 37 37 H 1.09004 * 109.46930 * 150.26469 * 12 11 10 38 38 H 1.07993 * 126.07871 * 179.79158 * 13 11 10 39 39 H 1.08996 * 109.60945 * 185.03209 * 16 5 4 40 40 H 1.09000 * 109.60775 * 64.51861 * 16 5 4 41 41 H 1.08997 * 109.46910 * 304.20060 * 19 17 16 42 42 H 1.09003 * 109.47107 * 64.19782 * 19 17 16 43 43 H 1.09001 * 109.46885 * 184.19990 * 19 17 16 44 44 H 0.96996 * 120.00555 * 185.02268 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7335 1.2446 5 7 1.7607 -2.1677 1.0955 6 6 1.0607 -2.8299 2.0378 7 8 0.5810 -2.2242 2.9767 8 7 0.8925 -4.1635 1.9395 9 6 0.2569 -4.8681 2.9720 10 7 -0.2120 -4.3507 4.0830 11 7 -0.7706 -5.3848 4.8451 12 6 -1.4074 -5.2399 6.1565 13 6 -0.6151 -6.5394 4.1616 14 6 0.0167 -6.2516 3.0003 15 17 0.4523 -7.3902 1.7644 16 6 2.2539 -2.8671 -0.0994 17 6 1.7390 -2.1334 -1.3440 18 1 0.6642 -2.2851 -1.4427 19 6 2.4498 -2.6711 -2.5876 20 7 2.0231 -0.6992 -1.1949 21 6 2.7343 -0.0265 -2.1523 22 1 3.5369 -0.5231 -2.6775 23 6 2.4239 1.2938 -2.4478 24 7 1.3038 1.8221 -2.0020 25 14 3.5955 2.3207 -3.4784 26 1 3.2469 2.1774 -4.9148 27 1 3.4833 3.7473 -3.0817 28 1 4.9879 1.8537 -3.2580 29 1 -0.3633 -1.0276 0.0062 30 1 -0.3633 0.5191 0.8870 31 1 -0.3634 0.5085 -0.8930 32 1 3.1199 -0.5817 1.3403 33 1 1.5385 -0.3505 2.1306 34 1 1.2109 -4.6361 1.1545 35 1 -0.6570 -5.3525 6.9391 36 1 -1.8652 -4.2536 6.2311 37 1 -2.1736 -6.0061 6.2749 38 1 -0.9379 -7.5180 4.4845 39 1 1.8856 -3.8929 -0.1009 40 1 3.3439 -2.8670 -0.0994 41 1 3.5281 -2.5781 -2.4585 42 1 2.1900 -3.7202 -2.7295 43 1 2.1376 -2.0981 -3.4608 44 1 1.0514 2.7201 -2.2681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881172652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = 98.754234 kcal Electronic energy + Delta-G solvation = -28549.794396 eV Core-core repulsion = 24567.024258 eV Total energy + Delta-G solvation = -3982.770138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51050 -39.92911 -37.50884 -36.61152 -34.97510 -34.03577 -32.71191 -32.23394 -31.09766 -30.05247 -27.92190 -26.78549 -26.25416 -25.21224 -23.66513 -22.11828 -21.53585 -20.69897 -19.63591 -18.65274 -18.25056 -17.34102 -16.23590 -16.01600 -15.86593 -15.23497 -14.98864 -14.70149 -14.42577 -14.10059 -13.99052 -13.63916 -13.60074 -13.35024 -13.08385 -12.87355 -12.75174 -11.94990 -11.82099 -11.70410 -11.55499 -11.47006 -11.19745 -10.97677 -10.84821 -10.74616 -10.62737 -10.59073 -10.54793 -10.15224 -10.02887 -9.74257 -9.72993 -9.38473 -8.93095 -8.49423 -8.33558 -8.01238 -6.51576 -5.81479 -3.31336 1.58950 1.74510 2.37754 2.41883 3.00128 3.35032 3.43371 3.44061 3.66480 4.01240 4.29588 4.44957 4.53642 4.91268 5.08086 5.11347 5.21955 5.23486 5.35539 5.53872 5.61236 5.64649 5.83394 6.01634 6.17345 6.26684 6.31321 6.35221 6.48809 6.59047 6.62769 6.71163 6.82441 6.90699 6.98076 7.02148 7.07899 7.14461 7.56524 7.62140 7.73380 7.86722 8.20341 8.47934 8.86158 9.19687 9.79144 10.40341 11.26511 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.003015 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.393825 B = 9284.152632 C =10280.105705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.183 3.817 3 H 0.100 0.900 4 C 0.110 3.890 5 N -0.605 5.605 6 C 0.699 3.301 7 O -0.554 6.554 8 N -0.652 5.652 9 C 0.339 3.661 10 N -0.260 5.260 11 N -0.371 5.371 12 C 0.108 3.892 13 C 0.088 3.912 14 C -0.211 4.211 15 Cl -0.042 7.042 16 C 0.097 3.903 17 C 0.155 3.845 18 H 0.032 0.968 19 C -0.135 4.135 20 N -0.579 5.579 21 C -0.257 4.257 22 H 0.067 0.933 23 C 0.012 3.988 24 N -0.895 5.895 25 Si 0.900 3.100 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.279 1.279 29 H 0.021 0.979 30 H 0.027 0.973 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.415 0.585 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.185 0.815 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.069 0.931 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.132 -18.341 11.359 21.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 H 0.117 0.883 4 C -0.014 4.014 5 N -0.341 5.341 6 C 0.400 3.600 7 O -0.427 6.427 8 N -0.308 5.308 9 C 0.080 3.920 10 N -0.089 5.089 11 N -0.153 5.153 12 C -0.033 4.033 13 C -0.061 4.061 14 C -0.252 4.252 15 Cl -0.014 7.014 16 C -0.028 4.028 17 C 0.047 3.953 18 H 0.049 0.951 19 C -0.193 4.193 20 N -0.302 5.302 21 C -0.387 4.387 22 H 0.084 0.916 23 C -0.188 4.188 24 N -0.538 5.538 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.205 1.205 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.255 0.745 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.202 0.798 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.640 -16.595 12.734 21.232 hybrid contribution 0.764 -0.631 -1.629 1.907 sum -2.876 -17.226 11.106 20.696 Atomic orbital electron populations 1.21989 0.97954 0.98614 1.01229 1.20682 0.92534 0.96347 0.82867 0.88261 1.22449 0.99823 0.77603 1.01481 1.47198 1.55790 1.10916 1.20202 1.15847 0.80143 0.80505 0.83530 1.90975 1.52322 1.65684 1.33747 1.42345 1.61008 1.07231 1.20260 1.18773 0.95663 0.87915 0.89689 1.78338 1.19416 1.07583 1.03580 1.48248 1.45913 1.04355 1.16831 1.21893 0.97475 1.05005 0.78964 1.22075 0.99391 0.92951 0.91682 1.20308 1.18861 0.89360 0.96660 1.98320 1.92340 1.58908 1.51881 1.22395 0.99377 0.94174 0.86839 1.20769 0.96474 0.86884 0.91176 0.95085 1.21768 1.00509 0.98278 0.98754 1.44069 1.63277 1.02825 1.20020 1.19054 1.09821 0.94216 1.15587 0.91587 1.25255 0.96099 0.98931 0.98474 1.69909 1.21539 1.16056 1.46341 0.86342 0.80847 0.79760 0.80058 1.21449 1.21648 1.20455 0.96033 0.95355 0.90318 0.92276 0.89925 0.74486 0.90492 0.88777 0.89255 0.79822 0.92348 0.91257 0.92723 0.94190 0.91225 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.94 37.15 0.33 -2.90 16 2 C 0.18 4.21 2.33 -67.49 -0.16 4.05 16 3 H 0.10 2.56 6.39 -51.93 -0.33 2.23 16 4 C 0.11 2.25 5.97 -3.60 -0.02 2.22 16 5 N -0.61 -11.38 2.59 -178.21 -0.46 -11.84 16 6 C 0.70 13.51 8.26 -86.92 -0.72 12.79 16 7 O -0.55 -12.53 14.49 5.28 0.08 -12.45 16 8 N -0.65 -10.50 5.36 -15.48 -0.08 -10.58 16 9 C 0.34 5.33 7.81 -154.31 -1.21 4.12 16 10 N -0.26 -4.33 10.81 31.46 0.34 -3.99 16 11 N -0.37 -4.23 4.01 -68.14 -0.27 -4.51 16 12 C 0.11 0.69 11.47 59.85 0.69 1.38 16 13 C 0.09 0.85 11.46 -17.18 -0.20 0.65 16 14 C -0.21 -2.57 6.67 -39.80 -0.27 -2.83 16 15 Cl -0.04 -0.44 29.18 -51.86 -1.51 -1.96 16 16 C 0.10 1.62 5.87 -3.59 -0.02 1.60 16 17 C 0.15 3.02 3.23 -67.48 -0.22 2.80 16 18 H 0.03 0.66 7.41 -51.93 -0.38 0.28 16 19 C -0.14 -2.33 7.99 37.16 0.30 -2.03 16 20 N -0.58 -13.45 2.65 -157.02 -0.42 -13.87 16 21 C -0.26 -6.50 8.32 -15.06 -0.13 -6.62 16 22 H 0.07 1.63 6.50 -52.48 -0.34 1.29 16 23 C 0.01 0.32 4.97 -17.43 -0.09 0.23 16 24 N -0.90 -24.49 10.10 55.49 0.56 -23.93 16 25 Si 0.90 20.80 29.58 -169.99 -5.03 15.77 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.02 0.48 7.02 -51.93 -0.36 0.12 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 2.03 6.90 -51.93 -0.36 1.67 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.73 6.96 -51.93 -0.36 1.37 16 34 H 0.41 5.66 6.17 -40.82 -0.25 5.41 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.06 0.79 5.61 -51.93 -0.29 0.50 16 40 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 41 H 0.05 0.93 7.54 -51.93 -0.39 0.54 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 44 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -32.89 364.76 -8.98 -41.87 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.98 Total: 4.52 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -1.70 Total: 15.46 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -0.33 Total: -68.72 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.08 Total: -12.45 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.89 -8.98 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881172652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.627 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds