Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.61052 * 2 1 4 4 C 1.53368 * 109.61428 * 120.51371 * 2 1 3 5 5 N 1.46964 * 108.63423 * 70.32140 * 4 2 1 6 6 C 1.34777 * 120.59477 * 235.20755 * 5 4 2 7 7 O 1.21593 * 119.99818 * 4.95744 * 6 5 4 8 8 N 1.34776 * 120.00114 * 184.95954 * 6 5 4 9 9 C 1.40223 * 120.00152 * 174.92692 * 8 6 5 10 10 N 1.31215 * 125.96250 * 359.68300 * 9 8 6 11 11 N 1.40077 * 108.18347 * 179.88948 * 10 9 8 12 12 C 1.46501 * 125.97124 * 180.16170 * 11 10 9 13 13 C 1.35074 * 108.04861 * 0.38203 * 11 10 9 14 14 C 1.35290 * 107.83525 * 359.77692 * 13 11 10 15 15 Cl 1.73596 * 126.06875 * 180.02562 * 14 13 11 16 16 C 1.46974 * 118.81361 * 55.22633 * 5 4 2 17 17 C 1.53373 * 108.63007 * 304.77605 * 16 5 4 18 18 H 1.08999 * 109.75087 * 289.59102 * 17 16 5 19 19 C 1.53005 * 109.60556 * 169.16759 * 17 16 5 20 20 N 1.46964 * 108.63882 * 49.42271 * 17 16 5 21 21 C 1.36932 * 120.59252 * 124.78949 * 20 17 16 22 22 H 1.08007 * 120.00173 * 324.76412 * 21 20 17 23 23 C 1.38812 * 119.99867 * 144.76258 * 21 20 17 24 24 N 1.31618 * 120.00091 * 347.27659 * 23 21 20 25 25 Si 1.86800 * 120.00145 * 167.28397 * 23 21 20 26 26 H 1.48498 * 109.47432 * 89.99827 * 25 23 21 27 27 H 1.48502 * 109.47116 * 210.00001 * 25 23 21 28 28 H 1.48501 * 109.47067 * 329.99592 * 25 23 21 29 29 H 1.09000 * 109.47164 * 180.34365 * 1 2 3 30 30 H 1.09004 * 109.46951 * 300.33589 * 1 2 3 31 31 H 1.08998 * 109.47440 * 60.34140 * 1 2 3 32 32 H 1.09003 * 109.61384 * 190.06269 * 4 2 1 33 33 H 1.08994 * 109.61234 * 310.57853 * 4 2 1 34 34 H 0.97007 * 120.00181 * 354.91704 * 8 6 5 35 35 H 1.09002 * 109.46825 * 270.26115 * 12 11 10 36 36 H 1.08996 * 109.47224 * 30.26293 * 12 11 10 37 37 H 1.09004 * 109.46930 * 150.26469 * 12 11 10 38 38 H 1.07993 * 126.07871 * 179.79158 * 13 11 10 39 39 H 1.08996 * 109.60945 * 185.03209 * 16 5 4 40 40 H 1.09000 * 109.60775 * 64.51861 * 16 5 4 41 41 H 1.08997 * 109.46910 * 304.20060 * 19 17 16 42 42 H 1.09003 * 109.47107 * 64.19782 * 19 17 16 43 43 H 1.09001 * 109.46885 * 184.19990 * 19 17 16 44 44 H 0.96996 * 120.00555 * 185.02268 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0448 -0.7335 1.2446 5 7 1.7607 -2.1677 1.0955 6 6 1.0607 -2.8299 2.0378 7 8 0.5810 -2.2242 2.9767 8 7 0.8925 -4.1635 1.9395 9 6 0.2569 -4.8681 2.9720 10 7 -0.2120 -4.3507 4.0830 11 7 -0.7706 -5.3848 4.8451 12 6 -1.4074 -5.2399 6.1565 13 6 -0.6151 -6.5394 4.1616 14 6 0.0167 -6.2516 3.0003 15 17 0.4523 -7.3902 1.7644 16 6 2.2539 -2.8671 -0.0994 17 6 1.7390 -2.1334 -1.3440 18 1 0.6642 -2.2851 -1.4427 19 6 2.4498 -2.6711 -2.5876 20 7 2.0231 -0.6992 -1.1949 21 6 2.7343 -0.0265 -2.1523 22 1 3.5369 -0.5231 -2.6775 23 6 2.4239 1.2938 -2.4478 24 7 1.3038 1.8221 -2.0020 25 14 3.5955 2.3207 -3.4784 26 1 3.2469 2.1774 -4.9148 27 1 3.4833 3.7473 -3.0817 28 1 4.9879 1.8537 -3.2580 29 1 -0.3633 -1.0276 0.0062 30 1 -0.3633 0.5191 0.8870 31 1 -0.3634 0.5085 -0.8930 32 1 3.1199 -0.5817 1.3403 33 1 1.5385 -0.3505 2.1306 34 1 1.2109 -4.6361 1.1545 35 1 -0.6570 -5.3525 6.9391 36 1 -1.8652 -4.2536 6.2311 37 1 -2.1736 -6.0061 6.2749 38 1 -0.9379 -7.5180 4.4845 39 1 1.8856 -3.8929 -0.1009 40 1 3.3439 -2.8670 -0.0994 41 1 3.5281 -2.5781 -2.4585 42 1 2.1900 -3.7202 -2.7295 43 1 2.1376 -2.0981 -3.4608 44 1 1.0514 2.7201 -2.2681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881172652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = 78.505509 kcal Electronic energy + Delta-G solvation = -28550.672447 eV Core-core repulsion = 24567.024258 eV Total energy + Delta-G solvation = -3983.648189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.136 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50236 -41.34939 -39.12115 -37.43043 -36.24851 -35.69769 -34.27255 -33.50191 -32.68133 -30.98543 -29.73946 -28.01624 -27.58519 -26.63718 -25.45672 -23.32548 -22.66835 -22.15566 -21.07088 -20.20829 -19.53688 -18.44480 -17.83560 -17.24972 -17.03144 -16.88196 -16.35798 -16.02886 -15.77046 -15.41555 -15.36894 -15.22500 -14.90794 -14.61715 -14.45615 -13.96650 -13.62806 -13.49254 -13.40374 -13.08498 -12.86063 -12.79565 -12.68527 -12.49866 -12.35025 -12.30826 -12.26730 -12.03513 -11.86679 -11.76559 -11.62890 -11.54316 -11.35712 -11.00849 -10.46803 -10.02399 -9.68776 -9.14928 -8.39369 -7.79007 -5.30324 0.76727 0.91696 1.29066 1.32314 1.50154 1.53564 1.60563 1.97507 2.26066 2.54990 2.75017 3.37402 3.48892 3.54054 3.93337 4.12767 4.16306 4.23473 4.35823 4.44516 4.48550 4.51143 4.54534 4.62792 4.69303 4.72011 4.75920 4.80810 4.88753 4.97380 5.10354 5.18196 5.30501 5.40330 5.50239 5.59032 5.66464 5.75085 5.77846 5.88989 5.98283 6.45756 6.52663 6.89539 7.23850 7.41543 7.90290 8.47714 9.27160 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.003015 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.393825 B = 9284.152632 C =10280.105705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.187 3.813 3 H 0.068 0.932 4 C 0.124 3.876 5 N -0.607 5.607 6 C 0.699 3.301 7 O -0.592 6.592 8 N -0.643 5.643 9 C 0.312 3.688 10 N -0.320 5.320 11 N -0.368 5.368 12 C 0.097 3.903 13 C 0.113 3.887 14 C -0.227 4.227 15 Cl -0.030 7.030 16 C 0.104 3.896 17 C 0.148 3.852 18 H 0.013 0.987 19 C -0.126 4.126 20 N -0.593 5.593 21 C -0.253 4.253 22 H 0.074 0.926 23 C -0.040 4.040 24 N -0.925 5.925 25 Si 0.959 3.041 26 H -0.288 1.288 27 H -0.301 1.301 28 H -0.270 1.270 29 H 0.019 0.981 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.425 0.575 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.236 0.764 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -21.912 12.022 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 H 0.086 0.914 4 C -0.001 4.001 5 N -0.343 5.343 6 C 0.400 3.600 7 O -0.468 6.468 8 N -0.299 5.299 9 C 0.054 3.946 10 N -0.150 5.150 11 N -0.150 5.150 12 C -0.042 4.042 13 C -0.037 4.037 14 C -0.268 4.268 15 Cl -0.002 7.002 16 C -0.020 4.020 17 C 0.042 3.958 18 H 0.031 0.969 19 C -0.184 4.184 20 N -0.316 5.316 21 C -0.383 4.383 22 H 0.092 0.908 23 C -0.237 4.237 24 N -0.570 5.570 25 Si 0.788 3.212 26 H -0.215 1.215 27 H -0.228 1.228 28 H -0.195 1.195 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.267 0.733 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.150 0.850 38 H 0.252 0.748 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.151 -20.233 13.391 24.466 hybrid contribution 0.530 0.345 -1.744 1.855 sum -2.620 -19.888 11.647 23.196 Atomic orbital electron populations 1.21777 0.98516 0.97862 0.99774 1.20479 0.91924 0.95333 0.84352 0.91410 1.22091 0.99866 0.78687 0.99445 1.47158 1.55895 1.10267 1.20966 1.15945 0.79656 0.81456 0.82971 1.90944 1.53763 1.66865 1.35255 1.42065 1.60851 1.05993 1.20989 1.19061 0.96557 0.89374 0.89624 1.78181 1.20996 1.10862 1.04921 1.48626 1.44927 1.03913 1.17581 1.22318 0.98743 1.05925 0.77252 1.22857 0.96751 0.94035 0.90039 1.20436 1.20018 0.88217 0.98115 1.98320 1.92359 1.57988 1.51514 1.22409 1.00068 0.95201 0.84279 1.20976 0.95971 0.85023 0.93875 0.96894 1.21683 1.00334 1.00130 0.96253 1.44268 1.63212 1.04414 1.19706 1.19356 1.09700 0.94289 1.14951 0.90830 1.25906 0.97363 1.00220 1.00182 1.70074 1.23178 1.15795 1.47949 0.85407 0.79571 0.77713 0.78482 1.21532 1.22784 1.19475 0.96220 0.95214 0.93172 0.91528 0.90892 0.73306 0.89001 0.90083 0.84951 0.74769 0.88755 0.89986 0.92270 0.90230 0.93707 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.94 71.98 0.64 -5.18 16 2 C 0.19 8.84 2.33 45.02 0.11 8.95 16 3 H 0.07 3.65 6.39 -2.39 -0.02 3.64 16 4 C 0.12 5.12 5.97 86.41 0.52 5.63 16 5 N -0.61 -22.51 2.59 -835.99 -2.17 -24.68 16 6 C 0.70 26.91 8.26 179.05 1.48 28.39 16 7 O -0.59 -27.34 14.49 -4.01 -0.06 -27.40 16 8 N -0.64 -20.04 5.36 -321.16 -1.72 -21.76 16 9 C 0.31 9.48 7.81 133.32 1.04 10.52 16 10 N -0.32 -10.51 10.81 -54.38 -0.59 -11.10 16 11 N -0.37 -7.56 4.01 -369.48 -1.48 -9.05 16 12 C 0.10 0.99 11.47 127.77 1.47 2.46 16 13 C 0.11 1.77 11.46 83.51 0.96 2.72 16 14 C -0.23 -4.98 6.67 22.13 0.15 -4.83 16 15 Cl -0.03 -0.54 29.18 -2.72 -0.08 -0.62 16 16 C 0.10 3.26 5.87 86.41 0.51 3.77 16 17 C 0.15 5.63 3.23 45.03 0.15 5.78 16 18 H 0.01 0.56 7.41 -2.39 -0.02 0.54 16 19 C -0.13 -4.07 7.99 71.98 0.58 -3.50 16 20 N -0.59 -27.72 2.65 -650.70 -1.73 -29.44 16 21 C -0.25 -12.80 8.32 84.03 0.70 -12.10 16 22 H 0.07 3.57 6.50 -2.91 -0.02 3.55 16 23 C -0.04 -2.15 4.97 84.86 0.42 -1.73 16 24 N -0.92 -52.48 10.10 21.65 0.22 -52.26 16 25 Si 0.96 43.48 29.58 68.60 2.03 45.51 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 29 H 0.02 0.91 7.02 -2.39 -0.02 0.89 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 2.70 6.90 -2.39 -0.02 2.68 16 32 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.07 3.16 6.96 -2.39 -0.02 3.14 16 34 H 0.42 10.76 6.17 -92.70 -0.57 10.19 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.24 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.09 2.26 5.61 -2.39 -0.01 2.25 16 40 H 0.08 2.42 8.11 -2.39 -0.02 2.40 16 41 H 0.06 1.85 7.54 -2.39 -0.02 1.84 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.04 1.66 7.53 -2.39 -0.02 1.65 16 44 H 0.25 13.85 8.32 -92.71 -0.77 13.08 16 Total: -1.00 -75.48 364.76 3.60 -71.88 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.47 Total: 18.04 kcal Atomic # 6 Polarization: 32.17 SS G_CDS: 8.71 Total: 40.88 kcal Atomic # 7 Polarization: -140.83 SS G_CDS: -7.47 Total: -148.30 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.06 Total: -27.40 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -75.48 3.60 -71.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881172652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.390 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds