Wall clock time and date at job start Sat Apr 11 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 120.00081 * 2 1 4 4 H 1.48492 * 109.46970 * 269.99630 * 3 2 1 5 5 H 1.48507 * 109.46911 * 29.99644 * 3 2 1 6 6 H 1.48500 * 109.47360 * 149.99437 * 3 2 1 7 7 C 1.38658 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00074 * 0.02562 * 7 2 1 10 10 C 1.35746 * 117.00106 * 185.05736 * 9 7 2 11 11 C 1.38875 * 120.07093 * 354.46003 * 10 9 7 12 12 C 1.38098 * 119.93255 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06673 * 0.27337 * 12 11 10 14 14 C 1.50708 * 119.92891 * 179.70367 * 13 12 11 15 15 C 1.50694 * 109.47142 * 90.00372 * 14 13 12 16 16 O 1.21287 * 120.00044 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00025 * 180.02562 * 15 14 13 18 18 C 1.47067 * 136.05526 * 359.62303 * 17 15 14 19 19 C 1.53758 * 87.88689 * 152.96804 * 18 17 15 20 20 C 1.53002 * 114.08908 * 139.77733 * 19 18 17 21 21 C 1.50701 * 109.46958 * 91.56295 * 20 19 18 22 22 C 1.41386 * 126.58007 * 89.99753 * 21 20 19 23 23 C 1.34509 * 106.84109 * 179.97438 * 22 21 20 24 24 O 1.34308 * 108.42398 * 0.02562 * 23 22 21 25 25 C 1.34307 * 109.47032 * 359.77039 * 24 23 22 26 26 C 1.47068 * 136.05772 * 180.02562 * 17 15 14 27 27 C 1.38298 * 120.13821 * 359.45140 * 13 12 11 28 28 C 1.38099 * 120.06818 * 0.54966 * 27 13 12 29 29 H 0.96992 * 119.99905 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.03142 * 0.05102 * 11 10 9 31 31 H 1.07998 * 119.96373 * 180.02562 * 12 11 10 32 32 H 1.09003 * 109.46652 * 210.00662 * 14 13 12 33 33 H 1.09004 * 109.46678 * 330.00252 * 14 13 12 34 34 H 1.08997 * 113.46930 * 267.69812 * 18 17 15 35 35 H 1.08993 * 113.46804 * 38.14337 * 18 17 15 36 36 H 1.09002 * 114.39884 * 272.68005 * 19 18 17 37 37 H 1.08994 * 109.47535 * 211.55877 * 20 19 18 38 38 H 1.08997 * 109.46899 * 331.56362 * 20 19 18 39 39 H 1.08004 * 126.57707 * 359.93342 * 22 21 20 40 40 H 1.07999 * 125.79206 * 179.97438 * 23 22 21 41 41 H 1.08005 * 125.78787 * 180.23928 * 25 24 23 42 42 H 1.09001 * 113.46824 * 321.86245 * 26 17 15 43 43 H 1.08998 * 113.46885 * 92.24210 * 26 17 15 44 44 H 1.08004 * 119.96388 * 180.24930 * 27 13 12 45 45 H 1.08005 * 120.03196 * 179.74344 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4572 -3.4394 0.0952 12 6 4.2024 -4.5970 0.2038 13 6 3.5686 -5.8208 0.3194 14 6 4.3848 -7.0828 0.4311 15 6 4.6640 -7.3736 1.8831 16 8 4.2421 -6.6292 2.7427 17 7 5.3833 -8.4604 2.2265 18 6 6.0390 -9.5655 1.5113 19 6 7.0206 -9.6706 2.6901 20 6 7.3701 -11.1067 3.0856 21 6 8.6001 -11.5490 2.3356 22 6 9.9417 -11.4053 2.7580 23 6 10.7134 -11.9338 1.7914 24 8 9.9150 -12.3869 0.8111 25 6 8.6321 -12.1604 1.1379 26 6 5.8519 -9.0668 3.4817 27 6 2.1874 -5.8884 0.3379 28 6 1.4366 -4.7344 0.2295 29 1 -0.4849 0.8400 -0.0004 30 1 3.9527 -2.4844 0.0010 31 1 5.2812 -4.5469 0.1946 32 1 3.8309 -7.9136 -0.0060 33 1 5.3272 -6.9542 -0.1015 34 1 5.4047 -10.4443 1.3950 35 1 6.5109 -9.2591 0.5778 36 1 7.8909 -9.0191 2.6109 37 1 7.5624 -11.1519 4.1575 38 1 6.5373 -11.7647 2.8378 39 1 10.2817 -10.9565 3.6797 40 1 11.7922 -11.9844 1.8013 41 1 7.7721 -12.4229 0.5396 42 1 6.1643 -8.3354 4.2270 43 1 5.1679 -9.8134 3.8849 44 1 1.6954 -6.8453 0.4322 45 1 0.3580 -4.7883 0.2399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890568785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:32 Heat of formation + Delta-G solvation = -7.310320 kcal Electronic energy + Delta-G solvation = -27385.907344 eV Core-core repulsion = 23336.385249 eV Total energy + Delta-G solvation = -4049.522095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.33436 -41.45419 -40.73568 -39.26995 -38.03824 -35.10620 -34.40947 -33.04223 -31.88122 -31.78115 -30.23356 -28.46305 -27.40863 -26.96917 -26.25377 -23.66073 -22.74123 -22.37429 -21.78862 -20.91258 -19.94420 -19.80490 -18.84736 -18.29399 -17.96827 -17.02419 -16.83516 -16.66640 -16.35606 -16.31005 -15.81526 -15.66695 -15.51624 -15.28262 -14.92145 -14.64559 -14.49360 -14.32866 -14.03258 -13.72347 -13.60542 -13.56017 -13.34259 -12.99250 -12.88940 -12.84058 -12.57184 -12.47820 -12.32373 -12.26756 -12.13918 -12.11906 -11.30935 -11.19954 -10.93527 -10.76152 -10.42699 -9.79095 -9.67968 -9.29945 -8.92377 -8.48416 -6.16732 0.58945 0.63644 0.99708 1.32846 1.42475 1.51013 1.66667 1.75957 1.97627 2.16738 2.45177 2.81124 3.13144 3.32174 3.50312 3.71527 3.87999 3.96463 4.01644 4.11384 4.13332 4.17152 4.28256 4.38330 4.44455 4.52755 4.55583 4.58022 4.63108 4.68327 4.70665 4.77808 4.86579 4.91713 5.00702 5.03687 5.08569 5.13379 5.27057 5.28464 5.42421 5.46347 5.54260 5.69316 5.74634 5.75183 6.01415 6.20382 6.33599 6.77687 6.95896 7.22472 7.76656 8.74960 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.001676 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.332047 B =16697.901504 C =17075.428179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.416 4.416 8 H 0.100 0.900 9 O -0.232 6.232 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.061 4.061 13 C -0.148 4.148 14 C -0.068 4.068 15 C 0.534 3.466 16 O -0.587 6.587 17 N -0.659 5.659 18 C 0.104 3.896 19 C -0.099 4.099 20 C -0.030 4.030 21 C -0.189 4.189 22 C -0.229 4.229 23 C -0.052 4.052 24 O -0.197 6.197 25 C -0.045 4.045 26 C 0.096 3.904 27 C -0.057 4.057 28 C -0.205 4.205 29 H 0.273 0.727 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.153 0.847 40 H 0.223 0.777 41 H 0.227 0.773 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.147 0.853 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.994 -29.763 2.595 37.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.492 4.492 8 H 0.117 0.883 9 O -0.139 6.139 10 C 0.063 3.937 11 C -0.263 4.263 12 C -0.079 4.079 13 C -0.149 4.149 14 C -0.107 4.107 15 C 0.325 3.675 16 O -0.467 6.467 17 N -0.394 5.394 18 C -0.017 4.017 19 C -0.118 4.118 20 C -0.068 4.068 21 C -0.190 4.190 22 C -0.248 4.248 23 C -0.119 4.119 24 O -0.093 6.093 25 C -0.112 4.112 26 C -0.027 4.027 27 C -0.075 4.075 28 C -0.225 4.225 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.171 0.829 40 H 0.239 0.761 41 H 0.244 0.756 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.164 0.836 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.325 -29.134 2.698 36.206 hybrid contribution -0.116 1.436 0.465 1.514 sum 21.209 -27.698 3.164 35.029 Atomic orbital electron populations 1.70186 1.07996 1.28806 1.48861 1.26622 0.96917 1.02747 0.95822 0.84574 0.77671 0.74450 0.79395 1.18422 1.19430 1.17978 1.21824 0.92485 0.81516 1.53341 0.88315 1.83935 1.35911 1.12564 1.81506 1.19925 0.91599 0.88016 0.94190 1.21222 0.93187 0.99931 1.11964 1.20915 0.99616 0.91219 0.96161 1.19257 0.93449 0.94440 1.07724 1.20422 1.02200 0.96334 0.91751 1.20812 0.75617 0.79101 0.91922 1.90750 1.52650 1.49577 1.53742 1.49782 1.53363 1.23576 1.12697 1.23505 0.92125 0.88572 0.97491 1.22871 0.95787 0.97370 0.95813 1.19838 0.94010 0.93229 0.99685 1.20587 0.95756 1.05371 0.97275 1.22058 0.93324 1.06964 1.02428 1.24569 0.97957 1.01678 0.87675 1.84085 1.17642 1.64637 1.42969 1.24483 0.85011 1.03594 0.98113 1.23245 0.94694 0.95900 0.88853 1.20865 0.93412 0.97034 0.96200 1.20443 0.99967 0.90629 1.11417 0.91802 0.86401 0.84641 0.85383 0.85999 0.86788 0.88943 0.88755 0.89849 0.88440 0.82934 0.76057 0.75637 0.92468 0.88073 0.83554 0.86766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.38 13.67 21.61 0.30 -58.08 16 2 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 3 Si 1.02 44.65 29.55 68.60 2.03 46.67 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.42 -25.47 9.49 67.92 0.64 -24.82 16 8 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 9 O -0.23 -14.80 9.76 -22.71 -0.22 -15.02 16 10 C 0.11 6.07 6.65 22.58 0.15 6.22 16 11 C -0.24 -11.61 9.17 22.39 0.21 -11.41 16 12 C -0.06 -2.34 9.69 22.25 0.22 -2.13 16 13 C -0.15 -5.03 4.38 -19.83 -0.09 -5.12 16 14 C -0.07 -1.54 5.65 29.10 0.16 -1.37 16 15 C 0.53 14.76 8.07 87.66 0.71 15.47 16 16 O -0.59 -23.56 16.81 -3.05 -0.05 -23.61 16 17 N -0.66 -12.26 3.69 -857.68 -3.16 -15.42 16 18 C 0.10 0.85 8.00 83.27 0.67 1.51 16 19 C -0.10 -0.85 4.01 -10.36 -0.04 -0.89 16 20 C -0.03 -0.16 5.65 29.85 0.17 0.01 16 21 C -0.19 -1.63 5.40 -19.94 -0.11 -1.74 16 22 C -0.23 -2.28 10.87 22.19 0.24 -2.04 16 23 C -0.05 -0.48 12.09 66.97 0.81 0.33 16 24 O -0.20 -2.35 10.65 -2.57 -0.03 -2.37 16 25 C -0.05 -0.36 12.01 66.97 0.80 0.44 16 26 C 0.10 1.38 8.19 83.19 0.68 2.06 16 27 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 28 C -0.21 -9.52 9.99 22.39 0.22 -9.29 16 29 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.12 5.67 5.64 -2.91 -0.02 5.65 16 31 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 32 H 0.13 2.04 8.09 -2.39 -0.02 2.02 16 33 H 0.12 2.08 8.08 -2.39 -0.02 2.06 16 34 H 0.11 0.35 7.87 -2.39 -0.02 0.33 16 35 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 1.07 8.12 -2.39 -0.02 1.05 16 37 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.10 0.17 7.80 -2.39 -0.02 0.15 16 39 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.22 0.63 8.06 -2.91 -0.02 0.60 16 41 H 0.23 0.22 8.06 -2.91 -0.02 0.20 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 1.10 8.10 -2.39 -0.02 1.08 16 44 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 45 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -89.25 389.92 5.99 -83.25 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.00 Total: 20.18 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 6.13 Total: -35.60 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -2.87 Total: -73.51 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.30 Total: -41.01 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -89.25 5.99 -83.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890568785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.944 kcal (2) G-P(sol) polarization free energy of solvation -89.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds