Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34229 * 117.00189 * 2 1 4 4 O 1.20824 * 119.99908 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00094 * 179.97438 * 3 2 1 6 6 C 1.52993 * 109.47167 * 180.02562 * 5 3 2 7 7 N 1.46508 * 109.47089 * 188.86198 * 6 5 3 8 8 C 1.36932 * 119.99915 * 278.92505 * 7 6 5 9 9 H 1.08007 * 120.00346 * 11.25890 * 8 7 6 10 10 C 1.38812 * 119.99836 * 191.26099 * 8 7 6 11 11 N 1.31613 * 120.00452 * 31.37180 * 10 8 7 12 12 Si 1.86802 * 119.99748 * 211.37368 * 10 8 7 13 13 H 1.48493 * 109.47318 * 90.00115 * 12 10 8 14 14 H 1.48499 * 109.46945 * 210.00068 * 12 10 8 15 15 H 1.48507 * 109.47123 * 329.99630 * 12 10 8 16 16 C 1.46497 * 119.99879 * 98.92640 * 7 6 5 17 17 C 1.50703 * 109.47213 * 260.03794 * 16 7 6 18 18 C 1.38258 * 119.94147 * 263.24004 * 17 16 7 19 19 C 1.38217 * 120.15813 * 179.97438 * 18 17 16 20 20 C 1.38627 * 120.04286 * 0.02562 * 19 18 17 21 21 O 1.35989 * 120.06470 * 179.97438 * 20 19 18 22 22 C 1.42903 * 116.99824 * 0.02562 * 21 20 19 23 23 C 1.39060 * 119.87210 * 0.23025 * 20 19 18 24 24 O 1.36052 * 120.07358 * 179.75082 * 23 20 19 25 25 C 1.42897 * 117.00529 * 89.99888 * 24 23 20 26 26 C 1.38415 * 119.93446 * 83.25567 * 17 16 7 27 27 F 1.35098 * 120.02203 * 359.97438 * 26 17 16 28 28 H 1.08996 * 109.46854 * 59.99318 * 1 2 3 29 29 H 1.08999 * 109.46894 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46495 * 299.99568 * 1 2 3 31 31 H 1.09005 * 109.47234 * 60.00463 * 5 3 2 32 32 H 1.09006 * 109.47236 * 300.00974 * 5 3 2 33 33 H 1.09003 * 109.47345 * 68.86393 * 6 5 3 34 34 H 1.08996 * 109.47537 * 308.86132 * 6 5 3 35 35 H 0.97003 * 120.00579 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47414 * 140.03860 * 16 7 6 37 37 H 1.09004 * 109.47031 * 20.03917 * 16 7 6 38 38 H 1.07997 * 119.92350 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.97963 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.46844 * 299.99433 * 22 21 20 41 41 H 1.09000 * 109.47061 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47418 * 59.99609 * 22 21 20 43 43 H 1.08999 * 109.47428 * 179.97438 * 25 24 23 44 44 H 1.09005 * 109.46610 * 299.99827 * 25 24 23 45 45 H 1.08995 * 109.47361 * 59.99735 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4475 2.8233 -0.2111 8 6 6.3054 2.6264 0.8378 9 1 5.9338 2.2350 1.7733 10 6 7.6528 2.9298 0.6987 11 7 8.0282 3.9105 -0.0947 12 14 8.9334 1.9461 1.6378 13 1 9.3652 0.7856 0.8181 14 1 10.1057 2.8100 1.9288 15 1 8.3475 1.4607 2.9132 16 6 5.9769 3.1154 -1.5455 17 6 6.4226 1.8336 -2.2008 18 6 7.7530 1.4605 -2.1532 19 6 8.1666 0.2856 -2.7523 20 6 7.2475 -0.5224 -3.4035 21 8 7.6540 -1.6782 -3.9935 22 6 9.0436 -1.9988 -3.9031 23 6 5.9098 -0.1460 -3.4569 24 8 5.0052 -0.9333 -4.0993 25 6 4.3530 -1.9394 -3.3220 26 6 5.4992 1.0321 -2.8495 27 9 4.1996 1.3985 -2.8946 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 3.9565 0.7806 -0.8892 32 1 3.9558 0.7807 0.8908 33 1 3.7475 3.1953 0.9597 34 1 3.4852 3.2735 -0.7991 35 1 8.9698 4.1223 -0.1922 36 1 6.8258 3.7936 -1.4592 37 1 5.1994 3.5817 -2.1508 38 1 8.4709 2.0887 -1.6468 39 1 9.2067 -0.0028 -2.7137 40 1 9.6301 -1.2087 -4.3720 41 1 9.2325 -2.9434 -4.4132 42 1 9.3283 -2.0892 -2.8547 43 1 3.6589 -2.4937 -3.9537 44 1 5.0978 -2.6225 -2.9135 45 1 3.8046 -1.4694 -2.5057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895454064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = -144.379672 kcal Electronic energy + Delta-G solvation = -31961.992244 eV Core-core repulsion = 27475.757151 eV Total energy + Delta-G solvation = -4486.235093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.42051 -40.11759 -40.02747 -37.79475 -37.28371 -36.31812 -35.37459 -32.31398 -30.79382 -29.86367 -29.37013 -27.59775 -27.32126 -26.53892 -25.40617 -24.27431 -22.06033 -21.82139 -20.59575 -19.96393 -18.22380 -17.39733 -17.16643 -16.98976 -16.66358 -16.23301 -16.20196 -15.93587 -15.55135 -15.18642 -14.85367 -14.67653 -14.39356 -14.21218 -13.88460 -13.76398 -13.67889 -13.22833 -12.97332 -12.60557 -12.34795 -12.29168 -12.14824 -11.96526 -11.80358 -11.66882 -11.23894 -11.14341 -10.98142 -10.74099 -10.64736 -10.62596 -10.53313 -10.21867 -10.10780 -9.97873 -9.93578 -9.70124 -8.79054 -8.22083 -7.64808 -7.05478 -5.88725 -3.32238 1.47778 1.71341 2.57448 3.02368 3.27874 3.30388 3.37138 3.39228 3.73757 4.20094 4.38217 4.85430 5.07514 5.08372 5.14901 5.17677 5.19386 5.23438 5.25638 5.44579 5.45641 5.51269 5.51834 5.55603 5.61773 5.66245 5.69870 5.74574 5.82699 5.96216 6.11189 6.22499 6.49437 6.53341 6.57757 6.63919 6.75699 6.87296 7.12070 7.15668 7.31346 7.61950 7.67842 7.88457 8.08156 8.27009 9.00301 9.67083 10.10352 11.03967 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.007924 B = 0.006270 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.623540 B = 4464.934909 C = 6931.241561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.465 3.535 4 O -0.513 6.513 5 C -0.138 4.138 6 C 0.162 3.838 7 N -0.575 5.575 8 C -0.245 4.245 9 H 0.077 0.923 10 C 0.001 3.999 11 N -0.884 5.884 12 Si 0.883 3.117 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.279 1.279 16 C 0.148 3.852 17 C -0.115 4.115 18 C -0.032 4.032 19 C -0.213 4.213 20 C 0.116 3.884 21 O -0.310 6.310 22 C 0.027 3.973 23 C 0.014 3.986 24 O -0.320 6.320 25 C 0.034 3.966 26 C 0.113 3.887 27 F -0.129 7.129 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.257 0.743 36 H 0.148 0.852 37 H 0.036 0.964 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -10.467 -5.135 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.401 6.401 5 C -0.179 4.179 6 C 0.034 3.966 7 N -0.293 5.293 8 C -0.374 4.374 9 H 0.095 0.905 10 C -0.197 4.197 11 N -0.529 5.529 12 Si 0.713 3.287 13 H -0.212 1.212 14 H -0.218 1.218 15 H -0.204 1.204 16 C 0.022 3.978 17 C -0.119 4.119 18 C -0.051 4.051 19 C -0.232 4.232 20 C 0.070 3.930 21 O -0.224 6.224 22 C -0.068 4.068 23 C -0.031 4.031 24 O -0.236 6.236 25 C -0.060 4.060 26 C 0.092 3.908 27 F -0.108 7.108 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.164 0.836 37 H 0.055 0.945 38 H 0.163 0.837 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.521 -10.180 -5.401 12.050 hybrid contribution 0.521 -0.873 0.793 1.290 sum -3.000 -11.053 -4.608 12.345 Atomic orbital electron populations 1.23167 0.77455 1.03056 1.02262 1.86563 1.22716 1.34595 1.84485 1.24358 0.92654 0.80820 0.71297 1.90614 1.67443 1.36302 1.45739 1.22491 0.84960 1.04991 1.05428 1.20648 0.84912 0.90223 1.00785 1.44084 0.99643 1.80839 1.04706 1.19257 0.88896 1.35729 0.93509 0.90512 1.24504 0.97418 0.97891 0.99863 1.69688 1.15718 1.25981 1.41530 0.86543 0.81623 0.80659 0.79882 1.21188 1.21802 1.20386 1.20818 1.02019 0.92052 0.82867 1.21067 0.92334 1.01103 0.97416 1.21086 0.95851 0.94244 0.93883 1.21241 0.99202 0.97879 1.04925 1.18910 0.92316 0.86737 0.94995 1.86084 1.26498 1.37312 1.72462 1.23037 0.80433 1.01387 1.01958 1.17720 0.86806 0.93167 1.05424 1.86110 1.55086 1.46900 1.35524 1.22975 0.96406 0.90313 0.96356 1.17706 0.78941 0.94462 0.99684 1.91428 1.33708 1.91176 1.94463 0.92177 0.88654 0.92216 0.88181 0.88283 0.92709 0.92527 0.93207 0.83605 0.94548 0.83671 0.85360 0.92645 0.88550 0.92726 0.89277 0.93688 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.72 10.57 -39.26 -0.41 -6.14 16 3 C 0.47 8.29 7.95 36.01 0.29 8.58 16 4 O -0.51 -10.12 15.59 -18.75 -0.29 -10.41 16 5 C -0.14 -2.56 5.94 -27.89 -0.17 -2.73 16 6 C 0.16 3.35 5.17 -4.04 -0.02 3.33 16 7 N -0.58 -13.20 2.57 -174.61 -0.45 -13.64 16 8 C -0.25 -6.05 9.48 -15.06 -0.14 -6.20 16 9 H 0.08 1.89 8.00 -52.48 -0.42 1.47 16 10 C 0.00 0.02 3.68 -17.43 -0.06 -0.05 16 11 N -0.88 -22.14 9.55 55.49 0.53 -21.61 16 12 Si 0.88 19.71 29.65 -169.99 -5.04 14.67 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 C 0.15 3.31 5.13 -5.19 -0.03 3.28 16 17 C -0.12 -2.39 5.34 -104.55 -0.56 -2.94 16 18 C -0.03 -0.63 9.05 -39.58 -0.36 -0.98 16 19 C -0.21 -3.71 9.04 -39.45 -0.36 -4.06 16 20 C 0.12 2.05 6.70 -39.13 -0.26 1.79 16 21 O -0.31 -4.87 10.28 -34.26 -0.35 -5.22 16 22 C 0.03 0.30 9.81 101.05 0.99 1.29 16 23 C 0.01 0.27 5.74 -39.08 -0.22 0.04 16 24 O -0.32 -5.79 10.07 -34.46 -0.35 -6.14 16 25 C 0.03 0.49 11.13 101.05 1.13 1.62 16 26 C 0.11 2.24 6.31 -39.32 -0.25 1.99 16 27 F -0.13 -2.59 14.57 2.25 0.03 -2.56 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.10 1.93 5.10 -51.93 -0.26 1.66 16 32 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.05 1.15 8.11 -51.93 -0.42 0.73 16 34 H 0.06 1.19 7.39 -51.93 -0.38 0.80 16 35 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 36 H 0.15 3.57 4.66 -51.93 -0.24 3.33 16 37 H 0.04 0.79 7.41 -51.93 -0.38 0.40 16 38 H 0.15 3.04 6.21 -52.49 -0.33 2.71 16 39 H 0.13 1.87 6.30 -52.49 -0.33 1.54 16 40 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -28.68 377.12 -5.69 -34.37 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.08 Total: 4.56 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 1.04 Total: 6.44 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.08 Total: -35.26 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -1.41 Total: -27.91 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.03 Total: -2.56 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.04 Total: 14.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.68 -5.69 -34.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895454064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.006 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds