Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86800 * 119.99527 * 2 1 4 4 H 1.48504 * 109.46879 * 269.99384 * 3 2 1 5 5 H 1.48495 * 109.47700 * 29.99546 * 3 2 1 6 6 H 1.48504 * 109.47283 * 149.99912 * 3 2 1 7 7 C 1.38625 * 120.00380 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99742 * 0.02562 * 7 2 1 9 9 O 1.34801 * 120.00146 * 179.97438 * 7 2 1 10 10 C 1.35794 * 116.99836 * 185.06539 * 9 7 2 11 11 C 1.38724 * 120.09001 * 354.40535 * 10 9 7 12 12 C 1.38354 * 119.97954 * 180.24926 * 11 10 9 13 13 F 1.35104 * 119.91923 * 179.76396 * 12 11 10 14 14 C 1.38530 * 120.15948 * 359.75180 * 12 11 10 15 15 C 1.38214 * 120.17642 * 0.02562 * 14 12 11 16 16 C 1.38715 * 120.01665 * 359.96402 * 15 14 12 17 17 N 1.39930 * 120.07678 * 180.02562 * 16 15 14 18 18 C 1.46490 * 120.00363 * 359.97438 * 17 16 15 19 19 C 1.52994 * 109.47461 * 180.02562 * 18 17 16 20 20 H 1.08994 * 109.47422 * 305.00610 * 19 18 17 21 21 O 1.42900 * 109.47077 * 65.00489 * 19 18 17 22 22 C 1.52998 * 109.47465 * 185.00006 * 19 18 17 23 23 C 1.52999 * 109.47434 * 175.00170 * 22 19 18 24 24 O 1.42898 * 110.45745 * 64.30226 * 23 22 19 25 25 C 1.54509 * 110.51272 * 186.90470 * 23 22 19 26 26 C 1.54491 * 104.06266 * 118.64610 * 25 23 22 27 27 O 1.44427 * 104.80019 * 23.97971 * 26 25 23 28 28 C 1.44648 * 105.36838 * 319.56255 * 27 26 25 29 29 H 0.96995 * 120.00190 * 0.02562 * 1 2 3 30 30 H 1.07993 * 120.01217 * 359.97438 * 11 10 9 31 31 H 1.08002 * 119.91463 * 180.02562 * 14 12 11 32 32 H 1.08001 * 119.98762 * 179.97438 * 15 14 12 33 33 H 0.97006 * 119.99406 * 179.97438 * 17 16 15 34 34 H 1.09009 * 109.47227 * 59.99946 * 18 17 16 35 35 H 1.09005 * 109.47516 * 300.00262 * 18 17 16 36 36 H 0.96700 * 114.00527 * 59.99612 * 21 19 18 37 37 H 1.08998 * 109.47368 * 55.00118 * 22 19 18 38 38 H 1.09002 * 109.47198 * 295.00183 * 22 19 18 39 39 H 0.96700 * 114.00530 * 180.02562 * 24 23 22 40 40 H 1.09000 * 110.51331 * 237.28708 * 25 23 22 41 41 H 1.08993 * 110.51365 * 359.86292 * 25 23 22 42 42 H 1.09001 * 110.36892 * 142.81025 * 26 25 23 43 43 H 1.08996 * 110.36783 * 265.03714 * 26 25 23 44 44 H 1.08993 * 110.34390 * 281.59876 * 28 27 26 45 45 H 1.09003 * 110.50612 * 159.18331 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6528 0.6999 6 1 3.5473 1.4404 0.7001 7 6 2.0091 -1.2005 0.0005 8 1 1.4691 -2.1358 0.0005 9 8 3.3571 -1.2004 0.0000 10 6 3.9735 -2.4057 -0.1062 11 6 3.2249 -3.5735 -0.0912 12 6 3.8558 -4.8005 -0.1944 13 9 3.1260 -5.9373 -0.1749 14 6 5.2340 -4.8662 -0.3181 15 6 5.9858 -3.7067 -0.3384 16 6 5.3609 -2.4726 -0.2356 17 7 6.1207 -1.2977 -0.2566 18 6 7.5780 -1.3702 -0.3867 19 6 8.1614 0.0442 -0.3823 20 1 7.6843 0.6364 -1.1631 21 8 7.9252 0.6530 0.8887 22 6 9.6675 -0.0245 -0.6428 23 6 10.2296 1.3935 -0.7624 24 8 10.0888 2.0927 0.4758 25 6 11.7122 1.3534 -1.1958 26 6 11.7284 2.1009 -2.5477 27 8 10.5663 2.9577 -2.5095 28 6 9.5229 2.1616 -1.9013 29 1 -0.4850 0.8400 -0.0004 30 1 2.1504 -3.5251 0.0055 31 1 5.7224 -5.8262 -0.3988 32 1 7.0602 -3.7615 -0.4345 33 1 5.6824 -0.4353 -0.1850 34 1 7.8351 -1.8668 -1.3224 35 1 7.9899 -1.9352 0.4496 36 1 8.3219 0.1784 1.6320 37 1 9.8516 -0.5676 -1.5697 38 1 10.1560 -0.5405 0.1838 39 1 10.4285 2.9978 0.4574 40 1 12.3373 1.8690 -0.4668 41 1 12.0453 0.3234 -1.3225 42 1 12.6363 2.6968 -2.6409 43 1 11.6533 1.3933 -3.3734 44 1 9.1062 1.4641 -2.6278 45 1 8.7397 2.8031 -1.4972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905332122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = -185.630358 kcal Electronic energy + Delta-G solvation = -30033.598733 eV Core-core repulsion = 25545.574876 eV Total energy + Delta-G solvation = -4488.023857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.10476 -40.53175 -39.40632 -37.98814 -36.65065 -36.10194 -34.33504 -32.66000 -32.38891 -30.85021 -29.48812 -29.24617 -27.46382 -25.39484 -25.30071 -23.58396 -22.28059 -21.33067 -21.12066 -20.69134 -18.13155 -17.83744 -17.71241 -17.07018 -16.52356 -16.43650 -16.06427 -15.58725 -15.37580 -15.29053 -14.91394 -14.85424 -14.66278 -14.11524 -14.08938 -14.00656 -13.83536 -13.56252 -13.32633 -13.15590 -12.98417 -12.68105 -12.34748 -12.21451 -12.12423 -11.92407 -11.66623 -11.54704 -11.35873 -11.28229 -11.06866 -10.79705 -10.71303 -10.57284 -10.33324 -10.03590 -9.82222 -9.54870 -9.39094 -8.89408 -7.87206 -6.60727 -6.42977 -4.07779 2.00730 2.10769 3.20531 3.24354 3.38698 3.43977 3.64770 3.82698 4.06025 4.21214 4.24746 4.31661 4.35027 4.43669 4.57966 4.65136 4.69967 4.76976 4.92588 5.00791 5.05840 5.13443 5.17915 5.21894 5.28712 5.32595 5.40438 5.46614 5.52253 5.54724 5.59879 5.72841 5.91539 6.00319 6.23058 6.30999 6.46216 6.71556 6.93670 6.98964 7.34254 7.46718 7.60035 7.65015 7.86959 8.01454 8.22714 8.91391 9.50207 10.64558 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.003220 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.439418 B = 8694.877381 C =10833.576993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.386 4.386 8 H 0.106 0.894 9 O -0.214 6.214 10 C 0.128 3.872 11 C -0.227 4.227 12 C 0.087 3.913 13 F -0.155 7.155 14 C -0.190 4.190 15 C -0.145 4.145 16 C 0.151 3.849 17 N -0.742 5.742 18 C 0.101 3.899 19 C 0.098 3.902 20 H 0.101 0.899 21 O -0.537 6.537 22 C -0.132 4.132 23 C 0.113 3.887 24 O -0.534 6.534 25 C -0.186 4.186 26 C 0.041 3.959 27 O -0.375 6.375 28 C 0.013 3.987 29 H 0.280 0.720 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.408 0.592 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.373 0.627 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.376 0.624 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.592 1.266 -2.703 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.461 4.461 8 H 0.124 0.876 9 O -0.119 6.119 10 C 0.074 3.926 11 C -0.248 4.248 12 C 0.066 3.934 13 F -0.134 7.134 14 C -0.210 4.210 15 C -0.169 4.169 16 C 0.050 3.950 17 N -0.377 5.377 18 C -0.025 4.025 19 C 0.038 3.962 20 H 0.119 0.881 21 O -0.341 6.341 22 C -0.170 4.170 23 C 0.071 3.929 24 O -0.339 6.339 25 C -0.224 4.224 26 C -0.036 4.036 27 O -0.294 6.294 28 C -0.064 4.064 29 H 0.090 0.910 30 H 0.162 0.838 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.244 0.756 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.220 0.780 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.223 0.777 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 24.002 1.643 -2.953 24.239 hybrid contribution 0.440 0.505 0.111 0.679 sum 24.442 2.148 -2.842 24.700 Atomic orbital electron populations 1.69655 1.05565 1.28516 1.47802 1.24445 0.95010 0.98755 0.95736 0.86219 0.80524 0.81501 0.78890 1.19962 1.20772 1.18082 1.20727 0.76665 0.96653 1.52053 0.87622 1.83497 1.22731 1.24646 1.81062 1.18300 0.89548 0.85884 0.98901 1.20931 1.01852 0.90184 1.11855 1.17245 0.89002 0.81275 1.05865 1.91397 1.77983 1.49461 1.94538 1.20347 0.91673 0.98408 1.10610 1.19907 0.98548 0.89655 1.08793 1.17093 0.87539 0.87235 1.03099 1.44160 1.03691 1.06269 1.83609 1.21894 0.82658 0.96964 1.01000 1.22072 0.92909 0.93166 0.88081 0.88088 1.86679 1.78501 1.53958 1.14964 1.22267 0.96807 0.94106 1.03845 1.22374 0.92583 0.92727 0.85228 1.86660 1.85136 1.29995 1.32095 1.23737 0.97615 1.02587 0.98479 1.23434 0.89980 0.93744 0.96395 1.89210 1.21083 1.36725 1.82377 1.24376 0.91794 0.95627 0.94605 0.91008 0.83800 0.86364 0.86163 0.75624 0.92196 0.92570 0.78024 0.89231 0.89963 0.77687 0.89700 0.89542 0.88930 0.91982 0.91134 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.96 55.48 0.77 -24.54 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.68 16 3 Si 0.90 21.40 28.62 -169.99 -4.86 16.54 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -10.72 9.94 30.88 0.31 -10.41 16 8 H 0.11 3.05 5.44 -52.49 -0.29 2.76 16 9 O -0.21 -5.41 7.83 -0.01 0.00 -5.41 16 10 C 0.13 2.88 6.67 -38.93 -0.26 2.62 16 11 C -0.23 -5.05 9.14 -39.36 -0.36 -5.41 16 12 C 0.09 1.73 7.29 -39.43 -0.29 1.44 16 13 F -0.15 -3.05 17.26 2.25 0.04 -3.01 16 14 C -0.19 -3.26 10.02 -39.48 -0.40 -3.65 16 15 C -0.15 -2.37 9.31 -39.41 -0.37 -2.73 16 16 C 0.15 2.84 6.67 -83.52 -0.56 2.28 16 17 N -0.74 -12.06 5.68 -58.46 -0.33 -12.39 16 18 C 0.10 1.13 4.55 -4.05 -0.02 1.11 16 19 C 0.10 0.98 2.84 -26.74 -0.08 0.91 16 20 H 0.10 1.11 6.84 -51.93 -0.36 0.76 16 21 O -0.54 -6.53 11.77 -54.51 -0.64 -7.17 16 22 C -0.13 -0.95 3.97 -26.73 -0.11 -1.06 16 23 C 0.11 0.87 1.11 -89.05 -0.10 0.77 16 24 O -0.53 -4.79 11.51 -54.51 -0.63 -5.42 16 25 C -0.19 -1.10 6.51 -25.16 -0.16 -1.27 16 26 C 0.04 0.27 7.64 37.94 0.29 0.56 16 27 O -0.38 -3.67 11.65 -35.23 -0.41 -4.08 16 28 C 0.01 0.11 5.73 37.94 0.22 0.33 16 29 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.14 3.41 5.64 -52.49 -0.30 3.11 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.12 1.56 6.73 -52.49 -0.35 1.21 16 33 H 0.41 7.41 7.84 -40.82 -0.32 7.09 16 34 H 0.06 0.60 7.95 -51.92 -0.41 0.19 16 35 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 36 H 0.37 3.61 9.05 45.56 0.41 4.02 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.38 2.48 9.04 45.56 0.41 2.89 16 40 H 0.08 0.48 8.00 -51.93 -0.42 0.06 16 41 H 0.09 0.41 7.73 -51.93 -0.40 0.01 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.58 7.56 -51.93 -0.39 0.19 16 45 H 0.11 1.05 8.09 -51.93 -0.42 0.63 16 LS Contribution 373.31 15.07 5.63 5.63 Total: -1.00 -31.84 373.31 -6.90 -38.74 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -4.49 Total: 13.95 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -1.97 Total: -12.83 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.44 Total: -36.93 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.68 Total: -22.08 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.84 -6.90 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905332122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.887 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds