Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46507 * 124.17730 * 180.12117 * 7 5 4 9 9 C 1.52999 * 109.47261 * 269.95727 * 8 7 5 10 10 C 1.50694 * 109.47434 * 179.97438 * 9 8 7 11 11 O 1.20832 * 119.99515 * 0.02562 * 10 9 8 12 12 O 1.34229 * 120.00437 * 179.97438 * 10 9 8 13 13 C 1.45197 * 117.00150 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46913 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99867 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99785 * 180.02562 * 14 13 12 17 17 C 1.46496 * 119.99942 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47195 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99884 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00035 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00248 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00040 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46793 * 89.99666 * 22 20 18 24 24 H 1.48496 * 109.47253 * 209.99831 * 22 20 18 25 25 H 1.48502 * 109.46850 * 330.00190 * 22 20 18 26 26 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 27 27 O 1.21237 * 127.15808 * 180.02562 * 26 7 5 28 28 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 29 29 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 31 31 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 32 32 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 33 33 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 34 34 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 35 35 H 1.08999 * 109.46913 * 29.95392 * 8 7 5 36 36 H 1.08995 * 109.47189 * 149.95687 * 8 7 5 37 37 H 1.09004 * 109.46812 * 300.00411 * 9 8 7 38 38 H 1.09004 * 109.46925 * 59.99250 * 9 8 7 39 39 H 1.08990 * 109.47610 * 300.00105 * 13 12 10 40 40 H 1.09003 * 109.46948 * 60.00735 * 13 12 10 41 41 H 0.97006 * 120.00002 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.47165 * 299.99826 * 17 16 14 43 43 H 1.09001 * 109.47599 * 59.99767 * 17 16 14 44 44 H 0.96999 * 120.00618 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4686 -2.7992 1.4837 9 6 2.5252 -3.9701 1.7663 10 6 3.2424 -5.0045 2.5948 11 8 4.3903 -4.8236 2.9257 12 8 2.6058 -6.1264 2.9660 13 6 3.3586 -7.0788 3.7626 14 6 2.4871 -8.2659 4.0825 15 8 1.3443 -8.3056 3.6785 16 7 2.9778 -9.2835 4.8176 17 6 2.1309 -10.4378 5.1281 18 6 2.9122 -11.4262 5.9549 19 1 3.9370 -11.2154 6.2227 20 6 2.3184 -12.5991 6.3705 21 7 3.0004 -13.4619 7.0916 22 14 0.5456 -12.9634 5.9079 23 1 0.5114 -13.6946 4.6159 24 1 -0.0806 -13.7970 6.9653 25 1 -0.2033 -11.6879 5.7747 26 6 2.0633 -0.7692 1.1923 27 8 1.8892 -0.5152 2.3650 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0275 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 1.7232 1.9495 0.8962 32 1 3.1565 1.4125 -0.0126 33 1 1.7029 1.9571 -0.8836 34 1 1.9042 -0.5386 -2.0948 35 1 4.3417 -3.1594 0.9396 36 1 3.7863 -2.3530 2.4260 37 1 1.6519 -3.6099 2.3103 38 1 2.2074 -4.4163 0.8239 39 1 4.2331 -7.4099 3.2026 40 1 3.6793 -6.6037 4.6897 41 1 3.8918 -9.2515 5.1410 42 1 1.2562 -10.1065 5.6878 43 1 1.8104 -10.9132 4.2011 44 1 2.5825 -14.2869 7.3843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000918020991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = -164.686258 kcal Electronic energy + Delta-G solvation = -28801.197820 eV Core-core repulsion = 24334.002129 eV Total energy + Delta-G solvation = -4467.195691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -43.08798 -40.74655 -39.14272 -38.93306 -37.29459 -36.70118 -36.01769 -34.39394 -32.70627 -32.44094 -31.54017 -29.55183 -28.24596 -27.38934 -25.97934 -24.52380 -22.47560 -22.05939 -21.17986 -20.66592 -20.14705 -18.60824 -18.06645 -17.63084 -17.24759 -17.04839 -16.70846 -16.47322 -16.26452 -16.00057 -15.40592 -15.20826 -15.11112 -14.96725 -14.70031 -14.22885 -14.16049 -14.00822 -13.37104 -13.27917 -13.05541 -13.04249 -12.97127 -12.94940 -12.49480 -12.37179 -12.30253 -12.10346 -11.80356 -11.32068 -11.08505 -10.87524 -10.84464 -10.76993 -10.65243 -10.40009 -10.08365 -10.01131 -9.55464 -9.37153 -8.82861 -8.28760 -6.24962 -4.28176 1.06593 1.52505 1.94977 2.25469 2.48451 2.55375 3.00528 3.24797 3.29308 3.31722 3.39409 3.82037 3.84425 4.04416 4.20161 4.30199 4.32720 4.58345 4.71738 4.79146 4.82808 4.90783 4.93118 4.93743 4.98101 5.08411 5.09463 5.14501 5.20271 5.27585 5.31171 5.37401 5.40805 6.18863 6.21416 6.47793 6.71682 6.81197 6.99604 7.07384 7.30476 7.47686 7.58672 8.03254 8.39829 8.66377 8.78344 9.34001 10.86770 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.001695 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.996246 B =16517.058269 C =16756.830609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.117 3.883 3 C -0.147 4.147 4 N -0.721 5.721 5 C 0.702 3.298 6 O -0.535 6.535 7 N -0.576 5.576 8 C 0.131 3.869 9 C -0.132 4.132 10 C 0.472 3.528 11 O -0.508 6.508 12 O -0.327 6.327 13 C 0.049 3.951 14 C 0.502 3.498 15 O -0.537 6.537 16 N -0.699 5.699 17 C 0.222 3.778 18 C -0.547 4.547 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.890 5.890 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.261 1.261 26 C 0.528 3.472 27 O -0.456 6.456 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.440 0.560 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.399 0.601 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 32.849 -16.623 36.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 C -0.206 4.206 4 N -0.387 5.387 5 C 0.402 3.598 6 O -0.407 6.407 7 N -0.323 5.323 8 C 0.009 3.991 9 C -0.170 4.170 10 C 0.314 3.686 11 O -0.397 6.397 12 O -0.242 6.242 13 C -0.028 4.028 14 C 0.285 3.715 15 O -0.414 6.414 16 N -0.349 5.349 17 C 0.100 3.900 18 C -0.585 4.585 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.527 5.527 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.185 1.185 26 C 0.315 3.685 27 O -0.324 6.324 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.285 0.715 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.233 0.767 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.484 32.250 -16.327 36.233 hybrid contribution -0.323 -0.374 -0.338 0.599 sum -2.807 31.876 -16.665 36.079 Atomic orbital electron populations 1.22028 0.89868 1.04133 1.04637 1.21499 0.97412 0.94323 0.84099 1.22014 1.02161 0.91763 1.04619 1.45774 1.55068 1.28754 1.09095 1.15968 0.79838 0.82373 0.81592 1.91063 1.47879 1.41015 1.60759 1.46389 1.49720 1.28199 1.07960 1.21456 0.94347 0.86432 0.96824 1.21639 1.00308 0.93377 1.01709 1.23211 0.85536 0.81778 0.78055 1.90701 1.18153 1.77616 1.53187 1.86542 1.44621 1.28649 1.64373 1.22864 0.94528 0.88774 0.96669 1.19922 0.87920 0.83671 0.79999 1.90704 1.18422 1.79654 1.52654 1.46066 1.17295 1.19615 1.51961 1.19559 0.91262 0.82996 0.96147 1.21066 1.00758 1.02706 1.33930 0.90104 1.24785 0.98201 0.95471 0.94079 1.69871 1.37202 1.09964 1.35689 0.86817 0.84876 0.79323 0.78685 1.19782 1.20823 1.18483 1.20877 0.77205 0.80386 0.90073 1.90837 1.56125 1.68889 1.16525 0.90050 0.91146 0.89558 0.89582 0.91293 0.90072 0.71476 0.87097 0.87318 0.86819 0.86550 0.88089 0.88110 0.76670 0.95408 0.95862 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 8.98 37.16 0.33 -0.06 16 2 C 0.12 0.48 1.37 -132.09 -0.18 0.29 16 3 C -0.15 -0.34 8.98 37.16 0.33 -0.01 16 4 N -0.72 -3.25 5.93 -52.85 -0.31 -3.56 16 5 C 0.70 5.85 8.63 -87.72 -0.76 5.10 16 6 O -0.53 -6.41 17.48 5.33 0.09 -6.32 16 7 N -0.58 -4.61 2.60 -120.63 -0.31 -4.92 16 8 C 0.13 1.13 4.99 -4.04 -0.02 1.11 16 9 C -0.13 -1.21 6.13 -27.89 -0.17 -1.38 16 10 C 0.47 5.86 7.96 36.00 0.29 6.15 16 11 O -0.51 -7.03 15.73 -18.75 -0.30 -7.33 16 12 O -0.33 -4.86 9.75 -45.90 -0.45 -5.31 16 13 C 0.05 0.71 5.94 36.01 0.21 0.92 16 14 C 0.50 9.53 7.91 -10.98 -0.09 9.45 16 15 O -0.54 -12.38 16.50 -14.11 -0.23 -12.61 16 16 N -0.70 -13.83 5.55 -61.47 -0.34 -14.17 16 17 C 0.22 5.38 4.50 -5.20 -0.02 5.36 16 18 C -0.55 -14.82 9.83 -34.44 -0.34 -15.16 16 19 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 22 Si 0.88 21.23 27.47 -169.99 -4.67 16.56 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 26 C 0.53 3.91 6.98 -10.56 -0.07 3.83 16 27 O -0.46 -4.51 17.76 5.59 0.10 -4.41 16 28 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.20 8.14 -51.92 -0.42 -0.23 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 34 H 0.44 0.96 8.96 -40.82 -0.37 0.59 16 35 H 0.11 1.01 7.82 -51.93 -0.41 0.60 16 36 H 0.11 0.92 7.96 -51.93 -0.41 0.51 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 40 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 41 H 0.40 6.80 8.32 -40.82 -0.34 6.46 16 42 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 43 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 386.55 15.07 5.83 5.83 Total: -1.00 -36.98 386.55 -6.50 -43.48 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.10 Total: 0.50 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: -0.58 Total: 17.71 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.20 Total: -48.11 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.78 Total: -35.98 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.98 -6.50 -43.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918020991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.206 kcal (2) G-P(sol) polarization free energy of solvation -36.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds