Wall clock time and date at job start Sat Apr 11 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 110.53719 * 2 1 4 4 N 1.47309 * 110.59850 * 237.16427 * 2 1 3 5 5 C 1.34861 * 106.44087 * 241.52072 * 4 2 1 6 6 O 1.21544 * 123.72820 * 179.97438 * 5 4 2 7 7 N 1.33787 * 112.49937 * 359.87131 * 5 4 2 8 8 C 1.46507 * 124.17730 * 180.12117 * 7 5 4 9 9 C 1.52999 * 109.47261 * 269.95727 * 8 7 5 10 10 C 1.50694 * 109.47434 * 179.97438 * 9 8 7 11 11 O 1.20832 * 119.99515 * 0.02562 * 10 9 8 12 12 O 1.34229 * 120.00437 * 179.97438 * 10 9 8 13 13 C 1.45197 * 117.00150 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46913 * 179.97438 * 13 12 10 15 15 O 1.21283 * 119.99867 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99785 * 180.02562 * 14 13 12 17 17 C 1.46496 * 119.99942 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.47195 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99884 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00035 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00248 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 120.00040 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46793 * 89.99666 * 22 20 18 24 24 H 1.48496 * 109.47253 * 209.99831 * 22 20 18 25 25 H 1.48502 * 109.46850 * 330.00190 * 22 20 18 26 26 C 1.34767 * 111.64639 * 0.08368 * 7 5 4 27 27 O 1.21237 * 127.15808 * 180.02562 * 26 7 5 28 28 H 1.09001 * 109.47002 * 59.29893 * 1 2 3 29 29 H 1.08993 * 109.46955 * 179.30331 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.30160 * 1 2 3 31 31 H 1.09008 * 109.47157 * 60.69509 * 3 2 1 32 32 H 1.08991 * 109.47304 * 180.70259 * 3 2 1 33 33 H 1.09003 * 109.47101 * 300.70319 * 3 2 1 34 34 H 0.97001 * 126.68625 * 61.45329 * 4 2 1 35 35 H 1.08999 * 109.46913 * 29.95392 * 8 7 5 36 36 H 1.08995 * 109.47189 * 149.95687 * 8 7 5 37 37 H 1.09004 * 109.46812 * 300.00411 * 9 8 7 38 38 H 1.09004 * 109.46925 * 59.99250 * 9 8 7 39 39 H 1.08990 * 109.47610 * 300.00105 * 13 12 10 40 40 H 1.09003 * 109.46948 * 60.00735 * 13 12 10 41 41 H 0.97006 * 120.00002 * 0.02562 * 16 14 13 42 42 H 1.09001 * 109.47165 * 299.99826 * 17 16 14 43 43 H 1.09001 * 109.47599 * 59.99767 * 17 16 14 44 44 H 0.96999 * 120.00618 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0668 1.4327 0.0000 4 7 2.0483 -0.7477 -1.1586 5 6 2.7600 -1.7791 -0.6600 6 8 3.3291 -2.6023 -1.3497 7 7 2.7715 -1.7938 0.6777 8 6 3.4686 -2.7992 1.4837 9 6 2.5252 -3.9701 1.7663 10 6 3.2424 -5.0045 2.5948 11 8 4.3903 -4.8236 2.9257 12 8 2.6058 -6.1264 2.9660 13 6 3.3586 -7.0788 3.7626 14 6 2.4871 -8.2659 4.0825 15 8 1.3443 -8.3056 3.6785 16 7 2.9778 -9.2835 4.8176 17 6 2.1309 -10.4378 5.1281 18 6 2.9122 -11.4262 5.9549 19 1 3.9370 -11.2154 6.2227 20 6 2.3184 -12.5991 6.3705 21 7 3.0004 -13.4619 7.0916 22 14 0.5456 -12.9634 5.9079 23 1 0.5114 -13.6946 4.6159 24 1 -0.0806 -13.7970 6.9653 25 1 -0.2033 -11.6879 5.7747 26 6 2.0633 -0.7692 1.1923 27 8 1.8892 -0.5152 2.3650 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0275 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 1.7232 1.9495 0.8962 32 1 3.1565 1.4125 -0.0126 33 1 1.7029 1.9571 -0.8836 34 1 1.9042 -0.5386 -2.0948 35 1 4.3417 -3.1594 0.9396 36 1 3.7863 -2.3530 2.4260 37 1 1.6519 -3.6099 2.3103 38 1 2.2074 -4.4163 0.8239 39 1 4.2331 -7.4099 3.2026 40 1 3.6793 -6.6037 4.6897 41 1 3.8918 -9.2515 5.1410 42 1 1.2562 -10.1065 5.6878 43 1 1.8104 -10.9132 4.2011 44 1 2.5825 -14.2869 7.3843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918020991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:18 Heat of formation + Delta-G solvation = -192.949819 kcal Electronic energy + Delta-G solvation = -28802.423420 eV Core-core repulsion = 24334.002129 eV Total energy + Delta-G solvation = -4468.421291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 4.76 seconds Orbital eigenvalues (eV) -43.66083 -41.83473 -40.47313 -39.81223 -37.97188 -37.65783 -36.75858 -36.22227 -34.47862 -33.31263 -32.09227 -31.09303 -28.96922 -28.43016 -26.80534 -25.14251 -24.15609 -22.87866 -21.99553 -21.74858 -21.32617 -19.46078 -19.25205 -18.81958 -18.29336 -18.07054 -17.78217 -17.40087 -17.10252 -16.82469 -16.75857 -16.47488 -16.37168 -15.80347 -15.41130 -15.37460 -15.29239 -14.85836 -14.55677 -14.40682 -14.32332 -13.96447 -13.70100 -13.66928 -13.51583 -13.26147 -13.11730 -13.09687 -12.71993 -12.55329 -12.53785 -12.00766 -11.96012 -11.94166 -11.83415 -11.67977 -11.23952 -11.14447 -10.98477 -10.93315 -10.53766 -10.06194 -8.40863 -6.48671 0.48022 0.84088 0.96278 1.31164 1.33306 1.36881 1.47021 1.49616 1.83255 2.07360 2.27445 2.45876 2.82671 2.94462 3.39722 3.48290 3.58791 3.71322 3.72175 3.77785 4.03056 4.03152 4.16879 4.21099 4.28940 4.53936 4.63330 4.68475 4.69944 4.73403 4.75430 4.88125 4.99040 5.13579 5.15836 5.21247 5.23027 5.38157 5.78336 5.90893 6.04362 6.26177 6.45102 6.51639 6.69951 7.02737 7.10096 7.25500 8.73652 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.001695 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.996246 B =16517.058269 C =16756.830609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.125 3.875 3 C -0.145 4.145 4 N -0.700 5.700 5 C 0.699 3.301 6 O -0.576 6.576 7 N -0.578 5.578 8 C 0.132 3.868 9 C -0.122 4.122 10 C 0.476 3.524 11 O -0.522 6.522 12 O -0.346 6.346 13 C 0.057 3.943 14 C 0.504 3.496 15 O -0.579 6.579 16 N -0.697 5.697 17 C 0.232 3.768 18 C -0.550 4.550 19 H 0.062 0.938 20 C 0.027 3.973 21 N -0.930 5.930 22 Si 0.937 3.063 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.259 1.259 26 C 0.524 3.476 27 O -0.484 6.484 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.453 0.547 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.413 0.587 42 H 0.018 0.982 43 H 0.016 0.984 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 35.049 -17.953 39.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 C -0.203 4.203 4 N -0.366 5.366 5 C 0.400 3.600 6 O -0.452 6.452 7 N -0.324 5.324 8 C 0.010 3.990 9 C -0.161 4.161 10 C 0.319 3.681 11 O -0.411 6.411 12 O -0.261 6.261 13 C -0.020 4.020 14 C 0.290 3.710 15 O -0.459 6.459 16 N -0.348 5.348 17 C 0.109 3.891 18 C -0.588 4.588 19 H 0.080 0.920 20 C -0.173 4.173 21 N -0.568 5.568 22 Si 0.761 3.239 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.183 1.183 26 C 0.312 3.688 27 O -0.354 6.354 28 H 0.126 0.874 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.301 0.699 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.250 0.750 42 H 0.036 0.964 43 H 0.034 0.966 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.539 34.509 -17.676 38.934 hybrid contribution 0.070 -0.979 0.084 0.986 sum -3.468 33.530 -17.592 38.023 Atomic orbital electron populations 1.22073 0.88201 1.04041 1.06115 1.21640 0.98394 0.94545 0.81943 1.22058 1.01715 0.90378 1.06118 1.45727 1.53541 1.27340 1.09994 1.16100 0.79871 0.82676 0.81400 1.91036 1.49833 1.42787 1.61512 1.46426 1.49699 1.28228 1.08015 1.21363 0.94164 0.86565 0.96892 1.21656 1.00384 0.92569 1.01459 1.23686 0.85417 0.81298 0.77688 1.90694 1.18847 1.77743 1.53859 1.86537 1.45437 1.29424 1.64704 1.22777 0.93534 0.87262 0.98392 1.20594 0.87740 0.84200 0.78463 1.90681 1.20527 1.80599 1.54100 1.45861 1.17584 1.18957 1.52394 1.19178 0.91111 0.83819 0.95035 1.21277 1.00254 1.03368 1.33851 0.92031 1.25593 1.02239 0.95448 0.94059 1.69974 1.39106 1.10702 1.37059 0.85861 0.80020 0.79222 0.78823 1.18977 1.19838 1.18319 1.21483 0.76548 0.80165 0.90632 1.90821 1.57136 1.69526 1.17903 0.87360 0.92080 0.89283 0.89275 0.92039 0.87361 0.69916 0.87787 0.87310 0.85654 0.85932 0.85689 0.85610 0.75040 0.96445 0.96593 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 8.98 71.98 0.65 0.26 16 2 C 0.12 0.75 1.37 2.98 0.00 0.75 16 3 C -0.14 -0.30 8.98 71.98 0.65 0.35 16 4 N -0.70 -4.98 5.93 -439.35 -2.61 -7.59 16 5 C 0.70 11.10 8.63 179.34 1.55 12.65 16 6 O -0.58 -13.71 17.48 -3.85 -0.07 -13.78 16 7 N -0.58 -8.88 2.60 -772.81 -2.01 -10.89 16 8 C 0.13 2.24 4.99 86.38 0.43 2.67 16 9 C -0.12 -2.15 6.13 29.85 0.18 -1.97 16 10 C 0.48 11.31 7.96 71.23 0.57 11.87 16 11 O -0.52 -13.86 15.73 21.95 0.35 -13.52 16 12 O -0.35 -9.84 9.75 -45.05 -0.44 -10.28 16 13 C 0.06 1.54 5.94 71.24 0.42 1.97 16 14 C 0.50 18.69 7.91 87.66 0.69 19.38 16 15 O -0.58 -26.50 16.50 15.76 0.26 -26.24 16 16 N -0.70 -27.10 5.55 -466.78 -2.59 -29.69 16 17 C 0.23 11.19 4.50 85.63 0.38 11.57 16 18 C -0.55 -29.97 9.83 25.60 0.25 -29.72 16 19 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 20 C 0.03 1.52 5.47 84.66 0.46 1.99 16 21 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 22 Si 0.94 43.63 27.47 68.60 1.88 45.52 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.26 -11.91 6.54 99.48 0.65 -11.26 16 26 C 0.52 7.22 6.98 87.94 0.61 7.83 16 27 O -0.48 -9.27 17.76 -2.90 -0.05 -9.33 16 28 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 0.19 8.14 -2.38 -0.02 0.18 16 32 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.45 0.89 8.96 -92.71 -0.83 0.06 16 35 H 0.10 1.91 7.82 -2.39 -0.02 1.89 16 36 H 0.11 1.83 7.96 -2.39 -0.02 1.81 16 37 H 0.13 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.13 2.83 8.13 -2.39 -0.02 2.81 16 40 H 0.13 2.82 8.13 -2.39 -0.02 2.80 16 41 H 0.41 13.71 8.32 -92.70 -0.77 12.94 16 42 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 43 H 0.02 0.80 7.57 -2.39 -0.02 0.79 16 44 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -80.37 386.55 1.28 -79.09 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -0.60 Total: 12.00 kcal Atomic # 6 Polarization: 32.75 SS G_CDS: 6.86 Total: 39.61 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -6.91 Total: -103.07 kcal Atomic # 8 Polarization: -73.19 SS G_CDS: 0.05 Total: -73.14 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.52 kcal Total: -80.37 1.28 -79.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918020991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.860 kcal (2) G-P(sol) polarization free energy of solvation -80.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.76 seconds