Wall clock time and date at job start Sat Apr 11 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46801 * 2 1 4 4 C 1.46505 * 120.00015 * 269.99516 * 3 2 1 5 5 C 1.50694 * 109.47463 * 270.00326 * 4 3 2 6 6 H 1.08008 * 119.99916 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00037 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99761 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47482 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47023 * 119.99894 * 9 7 5 12 12 H 1.48495 * 109.47221 * 239.99647 * 9 7 5 13 13 C 1.34770 * 120.00250 * 90.00093 * 3 2 1 14 14 O 1.21287 * 120.00383 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99868 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.47005 * 180.02562 * 15 13 3 17 17 C 1.34232 * 116.99803 * 179.97438 * 16 15 13 18 18 O 1.20827 * 120.00369 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99854 * 179.97438 * 17 16 15 20 20 N 1.46506 * 109.46851 * 180.02562 * 19 17 16 21 21 C 1.34763 * 124.17431 * 90.02894 * 20 19 17 22 22 O 1.21234 * 127.16039 * 359.92588 * 21 20 19 23 23 C 1.51585 * 105.68455 * 179.97438 * 21 20 19 24 24 N 1.47309 * 103.59064 * 359.97438 * 23 21 20 25 25 C 1.46504 * 126.68818 * 180.02562 * 24 23 21 26 26 C 1.33784 * 124.17723 * 269.72542 * 20 19 17 27 27 O 1.21539 * 123.77572 * 0.03940 * 26 20 19 28 28 H 1.09005 * 109.46998 * 60.00542 * 1 2 3 29 29 H 1.08999 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47453 * 300.00052 * 1 2 3 31 31 H 1.08998 * 109.47453 * 239.99948 * 2 1 3 32 32 H 1.08996 * 109.47254 * 119.99445 * 2 1 3 33 33 H 1.08997 * 109.46976 * 30.00381 * 4 3 2 34 34 H 1.09003 * 109.47094 * 149.99835 * 4 3 2 35 35 H 0.96998 * 119.99932 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47694 * 60.00274 * 15 13 3 37 37 H 1.09001 * 109.46934 * 299.99625 * 15 13 3 38 38 H 1.08994 * 109.46872 * 60.00784 * 19 17 16 39 39 H 1.08997 * 109.47234 * 300.00336 * 19 17 16 40 40 H 1.09003 * 110.59995 * 118.52446 * 23 21 20 41 41 H 1.09001 * 110.60165 * 241.47120 * 23 21 20 42 42 H 1.08997 * 109.47182 * 90.00246 * 25 24 23 43 43 H 1.09005 * 109.47073 * 210.00531 * 25 24 23 44 44 H 1.08999 * 109.47477 * 329.99687 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0957 7 6 4.1490 2.3897 -2.8780 8 7 3.3487 3.1250 -3.6186 9 14 5.9135 2.0968 -3.4168 10 1 6.6012 1.2417 -2.4163 11 1 5.9215 1.4171 -4.7371 12 1 6.6203 3.3982 -3.5257 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1600 1.1671 15 6 1.9912 1.3064 2.4722 16 8 2.3053 2.1962 3.5758 17 6 2.1333 1.7129 4.8163 18 8 1.7340 0.5835 4.9746 19 6 2.4393 2.5784 6.0114 20 7 2.1727 1.8263 7.2400 21 6 3.0862 1.0662 7.8755 22 8 4.2394 0.8816 7.5501 23 6 2.3716 0.4889 9.0813 24 7 1.0109 1.0433 8.9755 25 6 -0.1049 0.8060 9.8947 26 6 0.9941 1.8140 7.8729 27 8 0.0165 2.4278 7.4926 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 3.6748 3.5154 -4.4445 36 1 2.6211 0.4188 2.5303 37 1 0.9431 1.0127 2.5298 38 1 1.8103 3.4683 5.9860 39 1 3.4881 2.8739 5.9870 40 1 2.3477 -0.5996 9.0282 41 1 2.8489 0.8184 10.0041 42 1 -0.0939 1.5600 10.6818 43 1 -1.0457 0.8658 9.3473 44 1 -0.0055 -0.1844 10.3388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919018408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:31 Heat of formation + Delta-G solvation = -138.535990 kcal Electronic energy + Delta-G solvation = -29804.226366 eV Core-core repulsion = 25338.164636 eV Total energy + Delta-G solvation = -4466.061730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.82706 -40.57730 -39.05478 -38.96271 -36.70923 -36.56550 -35.56695 -35.31546 -32.85288 -31.06620 -30.18952 -29.34308 -28.08026 -26.84443 -26.31551 -23.13341 -23.01417 -22.76697 -21.82792 -20.43191 -18.78081 -18.45501 -17.92332 -17.37898 -17.27331 -16.71621 -16.60390 -16.39069 -15.90533 -15.87737 -15.42420 -15.18500 -14.84169 -14.67798 -14.51302 -14.33712 -14.04714 -13.55676 -13.48169 -13.13472 -13.07297 -12.93831 -12.67131 -12.53855 -12.12319 -12.07374 -11.64998 -11.37992 -11.25238 -11.12353 -10.95891 -10.88950 -10.70178 -10.65188 -10.55624 -10.26201 -10.15518 -9.65205 -9.52552 -9.02449 -8.45669 -7.77006 -6.06519 -4.11327 1.19396 1.39932 1.94850 2.17509 2.48600 2.74324 3.22499 3.29514 3.37423 3.41841 3.51993 3.80426 4.14321 4.42098 4.46486 4.52528 4.58657 4.63024 4.81053 4.83557 4.91136 4.92239 5.11092 5.14155 5.17699 5.28262 5.34289 5.35054 5.57271 5.71895 5.87164 5.97887 6.17731 6.20716 6.43781 6.58950 6.87129 6.97856 7.38481 7.43324 7.50280 7.61548 7.89585 8.19460 8.27512 8.82850 8.97889 9.53790 11.01694 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.002272 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.109691 B =12318.968787 C =12956.329211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.322 6.322 17 C 0.450 3.550 18 O -0.504 6.504 19 C 0.130 3.870 20 N -0.567 5.567 21 C 0.526 3.474 22 O -0.460 6.460 23 C 0.068 3.932 24 N -0.628 5.628 25 C 0.121 3.879 26 C 0.704 3.296 27 O -0.535 6.535 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -7.843 27.932 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.393 6.393 15 C -0.026 4.026 16 O -0.236 6.236 17 C 0.291 3.709 18 O -0.391 6.391 19 C 0.007 3.993 20 N -0.313 5.313 21 C 0.314 3.686 22 O -0.329 6.329 23 C -0.058 4.058 24 N -0.368 5.368 25 C -0.019 4.019 26 C 0.406 3.594 27 O -0.407 6.407 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.315 -7.221 27.388 29.019 hybrid contribution 0.886 -0.498 -0.510 1.137 sum -5.430 -7.719 26.878 28.487 Atomic orbital electron populations 1.22235 0.96496 1.01708 1.02453 1.21513 0.93778 0.83936 1.03031 1.48211 1.63773 1.13408 1.07114 1.19347 0.96524 0.93731 0.77506 1.21459 0.96819 1.32045 1.06308 0.92336 1.24939 0.97949 0.94871 0.96361 1.69939 1.35614 1.33410 1.14317 0.86425 0.84516 0.78089 0.78287 1.19788 1.20965 1.20825 1.19660 0.79790 0.87154 0.84224 1.90722 1.44470 1.17442 1.86703 1.23029 1.02840 0.92590 0.84185 1.86528 1.78248 1.44937 1.13905 1.23774 0.74731 0.87123 0.85245 1.90676 1.42036 1.19759 1.86668 1.20976 1.07084 0.93530 0.77699 1.45981 1.13529 1.47032 1.24771 1.20928 0.85632 0.77436 0.84651 1.90867 1.14871 1.57813 1.69328 1.22503 0.82490 1.02153 0.98677 1.47425 1.12490 1.49905 1.26993 1.21552 0.87054 1.01798 0.91545 1.15760 0.82564 0.80475 0.80562 1.91016 1.33397 1.47155 1.69174 0.91729 0.91893 0.93136 0.89353 0.91811 0.94584 0.93656 0.92714 0.88534 0.88600 0.83809 0.83905 0.85671 0.85693 0.91798 0.89806 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.51 2.46 -175.06 -0.43 -12.94 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 5 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.51 10.84 7.75 -10.99 -0.09 10.75 16 14 O -0.52 -13.37 16.08 -14.11 -0.23 -13.59 16 15 C 0.05 0.85 4.50 36.01 0.16 1.01 16 16 O -0.32 -5.37 9.76 -45.91 -0.45 -5.82 16 17 C 0.45 6.49 8.03 36.01 0.29 6.78 16 18 O -0.50 -8.14 16.18 -18.75 -0.30 -8.44 16 19 C 0.13 1.37 6.29 -5.19 -0.03 1.34 16 20 N -0.57 -5.86 2.09 -122.02 -0.26 -6.12 16 21 C 0.53 4.82 8.31 -10.56 -0.09 4.73 16 22 O -0.46 -5.53 17.76 5.60 0.10 -5.44 16 23 C 0.07 0.32 7.66 -4.32 -0.03 0.29 16 24 N -0.63 -4.25 3.42 -187.94 -0.64 -4.89 16 25 C 0.12 0.44 11.17 59.85 0.67 1.11 16 26 C 0.70 7.55 8.31 -88.02 -0.73 6.82 16 27 O -0.53 -7.52 17.15 5.33 0.09 -7.43 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.66 7.22 -51.93 -0.37 0.29 16 31 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 32 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.10 1.46 7.39 -51.93 -0.38 1.08 16 37 H 0.10 1.41 7.18 -51.93 -0.37 1.04 16 38 H 0.14 1.29 7.85 -51.93 -0.41 0.88 16 39 H 0.14 1.21 8.00 -51.93 -0.42 0.79 16 40 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.13 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.08 0.41 8.04 -51.93 -0.42 -0.01 16 44 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -39.62 387.90 -6.51 -46.12 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -6.01 Total: -3.75 kcal Atomic # 6 Polarization: 25.24 SS G_CDS: 0.06 Total: 25.30 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.59 Total: -49.69 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -0.79 Total: -40.72 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.62 -6.51 -46.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919018408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.413 kcal (2) G-P(sol) polarization free energy of solvation -39.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds