Wall clock time and date at job start Sat Apr 11 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46801 * 2 1 4 4 C 1.46505 * 120.00015 * 269.99516 * 3 2 1 5 5 C 1.50694 * 109.47463 * 270.00326 * 4 3 2 6 6 H 1.08008 * 119.99916 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00058 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00037 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99761 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47482 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47023 * 119.99894 * 9 7 5 12 12 H 1.48495 * 109.47221 * 239.99647 * 9 7 5 13 13 C 1.34770 * 120.00250 * 90.00093 * 3 2 1 14 14 O 1.21287 * 120.00383 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99868 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.47005 * 180.02562 * 15 13 3 17 17 C 1.34232 * 116.99803 * 179.97438 * 16 15 13 18 18 O 1.20827 * 120.00369 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99854 * 179.97438 * 17 16 15 20 20 N 1.46506 * 109.46851 * 180.02562 * 19 17 16 21 21 C 1.34763 * 124.17431 * 90.02894 * 20 19 17 22 22 O 1.21234 * 127.16039 * 359.92588 * 21 20 19 23 23 C 1.51585 * 105.68455 * 179.97438 * 21 20 19 24 24 N 1.47309 * 103.59064 * 359.97438 * 23 21 20 25 25 C 1.46504 * 126.68818 * 180.02562 * 24 23 21 26 26 C 1.33784 * 124.17723 * 269.72542 * 20 19 17 27 27 O 1.21539 * 123.77572 * 0.03940 * 26 20 19 28 28 H 1.09005 * 109.46998 * 60.00542 * 1 2 3 29 29 H 1.08999 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47453 * 300.00052 * 1 2 3 31 31 H 1.08998 * 109.47453 * 239.99948 * 2 1 3 32 32 H 1.08996 * 109.47254 * 119.99445 * 2 1 3 33 33 H 1.08997 * 109.46976 * 30.00381 * 4 3 2 34 34 H 1.09003 * 109.47094 * 149.99835 * 4 3 2 35 35 H 0.96998 * 119.99932 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47694 * 60.00274 * 15 13 3 37 37 H 1.09001 * 109.46934 * 299.99625 * 15 13 3 38 38 H 1.08994 * 109.46872 * 60.00784 * 19 17 16 39 39 H 1.08997 * 109.47234 * 300.00336 * 19 17 16 40 40 H 1.09003 * 110.59995 * 118.52446 * 23 21 20 41 41 H 1.09001 * 110.60165 * 241.47120 * 23 21 20 42 42 H 1.08997 * 109.47182 * 90.00246 * 25 24 23 43 43 H 1.09005 * 109.47073 * 210.00531 * 25 24 23 44 44 H 1.08999 * 109.47477 * 329.99687 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3429 1.2310 -1.0957 7 6 4.1490 2.3897 -2.8780 8 7 3.3487 3.1250 -3.6186 9 14 5.9135 2.0968 -3.4168 10 1 6.6012 1.2417 -2.4163 11 1 5.9215 1.4171 -4.7371 12 1 6.6203 3.3982 -3.5257 13 6 2.2429 2.0166 1.1671 14 8 2.6476 3.1600 1.1671 15 6 1.9912 1.3064 2.4722 16 8 2.3053 2.1962 3.5758 17 6 2.1333 1.7129 4.8163 18 8 1.7340 0.5835 4.9746 19 6 2.4393 2.5784 6.0114 20 7 2.1727 1.8263 7.2400 21 6 3.0862 1.0662 7.8755 22 8 4.2394 0.8816 7.5501 23 6 2.3716 0.4889 9.0813 24 7 1.0109 1.0433 8.9755 25 6 -0.1049 0.8060 9.8947 26 6 0.9941 1.8140 7.8729 27 8 0.0165 2.4278 7.4926 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 3.6748 3.5154 -4.4445 36 1 2.6211 0.4188 2.5303 37 1 0.9431 1.0127 2.5298 38 1 1.8103 3.4683 5.9860 39 1 3.4881 2.8739 5.9870 40 1 2.3477 -0.5996 9.0282 41 1 2.8489 0.8184 10.0041 42 1 -0.0939 1.5600 10.6818 43 1 -1.0457 0.8658 9.3473 44 1 -0.0055 -0.1844 10.3388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919018408.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:30 Heat of formation + Delta-G solvation = -166.054920 kcal Electronic energy + Delta-G solvation = -29805.419677 eV Core-core repulsion = 25338.164636 eV Total energy + Delta-G solvation = -4467.255040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.53861 -41.81448 -40.60349 -39.81362 -37.89112 -37.36094 -37.03048 -36.31231 -34.95731 -31.95832 -31.64351 -30.60298 -29.02845 -28.16571 -27.22133 -24.95728 -24.24711 -23.62653 -22.92740 -21.23691 -20.34155 -19.50718 -18.82215 -18.63700 -18.27924 -18.17037 -17.85719 -17.66343 -17.37727 -16.86563 -16.58534 -16.31243 -15.96076 -15.89283 -15.52564 -15.10963 -14.98184 -14.85685 -14.71415 -14.52558 -14.14200 -13.86767 -13.67393 -13.49827 -13.42358 -13.31035 -13.24668 -13.08476 -12.71445 -12.53915 -12.27868 -12.22877 -12.13654 -12.12091 -11.86748 -11.71348 -11.45869 -11.20325 -10.77745 -10.66346 -10.01322 -9.58074 -8.24715 -6.39089 0.49427 0.63847 0.82473 1.23660 1.36056 1.38575 1.49878 1.57078 1.84681 1.95835 2.29916 2.42039 2.95740 3.05395 3.34191 3.39146 3.56369 3.82672 3.88868 4.01573 4.07068 4.10444 4.14355 4.24142 4.34178 4.37098 4.54989 4.69563 4.83352 4.88174 4.91020 4.95779 4.99449 5.04743 5.18215 5.32675 5.34965 5.51879 5.77104 5.93200 6.02317 6.19566 6.32092 6.57261 6.69910 6.87786 7.17353 7.34120 8.83042 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.002272 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.109691 B =12318.968787 C =12956.329211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.268 1.268 12 H -0.282 1.282 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.063 3.937 16 O -0.341 6.341 17 C 0.451 3.549 18 O -0.522 6.522 19 C 0.129 3.871 20 N -0.572 5.572 21 C 0.520 3.480 22 O -0.495 6.495 23 C 0.078 3.922 24 N -0.619 5.619 25 C 0.114 3.886 26 C 0.694 3.306 27 O -0.580 6.580 28 H 0.045 0.955 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.031 0.969 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.154 0.846 41 H 0.167 0.833 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 -10.267 30.436 32.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.287 3.713 14 O -0.454 6.454 15 C -0.014 4.014 16 O -0.255 6.255 17 C 0.293 3.707 18 O -0.410 6.410 19 C 0.006 3.994 20 N -0.318 5.318 21 C 0.310 3.690 22 O -0.366 6.366 23 C -0.046 4.046 24 N -0.357 5.357 25 C -0.025 4.025 26 C 0.396 3.604 27 O -0.456 6.456 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.048 0.952 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.174 0.826 39 H 0.180 0.820 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.870 -9.723 29.949 32.030 hybrid contribution 0.684 0.230 -1.226 1.423 sum -5.185 -9.493 28.723 30.693 Atomic orbital electron populations 1.22177 0.94335 1.03799 1.01823 1.21866 0.95540 0.80988 1.04406 1.48210 1.63535 1.15255 1.05691 1.18814 0.95675 0.91697 0.79653 1.21713 0.97743 1.32177 1.06581 0.92777 1.25857 1.02439 0.94438 0.96406 1.70052 1.37679 1.34125 1.14804 0.85351 0.78936 0.78020 0.78393 1.19185 1.19354 1.20739 1.20461 0.78449 0.86666 0.85737 1.90684 1.47037 1.20023 1.87703 1.22860 1.04648 0.92028 0.81862 1.86536 1.78700 1.45505 1.14768 1.24480 0.73813 0.87343 0.85040 1.90649 1.43017 1.20677 1.86706 1.21146 1.08434 0.93223 0.76603 1.46153 1.14005 1.47216 1.24455 1.21701 0.85165 0.76688 0.85491 1.90851 1.16270 1.58977 1.70523 1.22790 0.80688 1.03280 0.97860 1.47691 1.13990 1.48233 1.25762 1.21847 0.85373 1.04330 0.90967 1.16041 0.82022 0.80841 0.81527 1.90979 1.34771 1.49252 1.70601 0.93543 0.88357 0.92621 0.89810 0.88579 0.95150 0.98151 0.92328 0.86436 0.86201 0.82627 0.82016 0.82855 0.81615 0.90258 0.91528 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 10.24 71.98 0.74 -3.40 16 2 C 0.09 2.89 5.93 86.38 0.51 3.40 16 3 N -0.59 -25.60 2.46 -826.16 -2.03 -27.63 16 4 C 0.26 14.23 5.16 85.63 0.44 14.67 16 5 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 9 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.50 21.81 7.75 87.66 0.68 22.49 16 14 O -0.57 -31.10 16.08 15.75 0.25 -30.85 16 15 C 0.06 2.04 4.50 71.24 0.32 2.36 16 16 O -0.34 -11.33 9.76 -45.08 -0.44 -11.77 16 17 C 0.45 12.78 8.03 71.24 0.57 13.35 16 18 O -0.52 -16.31 16.18 21.96 0.36 -15.95 16 19 C 0.13 2.67 6.29 85.63 0.54 3.21 16 20 N -0.57 -11.23 2.09 -777.22 -1.63 -12.85 16 21 C 0.52 8.55 8.31 87.94 0.73 9.28 16 22 O -0.50 -11.31 17.76 -2.89 -0.05 -11.36 16 23 C 0.08 0.44 7.66 85.76 0.66 1.10 16 24 N -0.62 -6.70 3.42 -866.95 -2.96 -9.67 16 25 C 0.11 0.50 11.17 127.77 1.43 1.93 16 26 C 0.69 14.14 8.31 179.44 1.49 15.63 16 27 O -0.58 -16.36 17.15 -3.84 -0.07 -16.43 16 28 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.35 7.22 -2.39 -0.02 1.34 16 31 H 0.08 2.66 8.07 -2.39 -0.02 2.64 16 32 H 0.10 2.35 6.44 -2.39 -0.02 2.33 16 33 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 34 H 0.00 0.02 7.42 -2.39 -0.02 0.00 16 35 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.12 3.32 7.39 -2.39 -0.02 3.30 16 37 H 0.12 3.31 7.18 -2.39 -0.02 3.29 16 38 H 0.16 2.81 7.85 -2.39 -0.02 2.79 16 39 H 0.16 2.66 8.00 -2.39 -0.02 2.64 16 40 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.17 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.07 0.57 8.04 -2.38 -0.02 0.55 16 44 H 0.12 -0.27 8.14 -2.39 -0.02 -0.29 16 Total: -1.00 -91.16 387.90 5.59 -85.57 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.03 Total: 5.92 kcal Atomic # 6 Polarization: 44.86 SS G_CDS: 8.81 Total: 53.68 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -6.33 Total: -106.09 kcal Atomic # 8 Polarization: -86.41 SS G_CDS: 0.05 Total: -86.36 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -91.16 5.59 -85.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919018408.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.484 kcal (2) G-P(sol) polarization free energy of solvation -91.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds