Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.61094 * 2 1 4 4 C 1.53377 * 109.60713 * 239.49267 * 2 1 3 5 5 N 1.47001 * 108.76886 * 190.92248 * 4 2 1 6 6 C 1.34775 * 120.61387 * 235.15701 * 5 4 2 7 7 O 1.21605 * 119.99820 * 185.50614 * 6 5 4 8 8 N 1.34776 * 120.00157 * 5.49689 * 6 5 4 9 9 C 1.40940 * 120.00033 * 185.90569 * 8 6 5 10 10 C 1.40203 * 126.07980 * 359.69641 * 9 8 6 11 11 N 1.30856 * 108.35099 * 179.85273 * 10 9 8 12 12 N 1.40068 * 108.38412 * 0.40420 * 11 10 9 13 13 C 1.46497 * 126.06287 * 179.76219 * 12 11 10 14 14 C 1.35841 * 126.08217 * 180.02562 * 9 8 6 15 15 Cl 1.73603 * 126.22949 * 0.02562 * 14 9 8 16 16 C 1.46959 * 118.78916 * 54.92232 * 5 4 2 17 17 C 1.53377 * 108.77909 * 305.07272 * 16 5 4 18 18 H 1.08994 * 109.60940 * 289.59710 * 17 16 5 19 19 C 1.53000 * 109.61018 * 169.08247 * 17 16 5 20 20 N 1.46962 * 109.61065 * 120.34648 * 2 1 3 21 21 C 1.36931 * 120.59093 * 354.94777 * 20 2 1 22 22 H 1.08000 * 120.00387 * 126.34030 * 21 20 2 23 23 C 1.38815 * 120.00453 * 306.33417 * 21 20 2 24 24 N 1.31618 * 119.99583 * 335.34171 * 23 21 20 25 25 Si 1.86802 * 120.00156 * 155.33581 * 23 21 20 26 26 H 1.48495 * 109.46921 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46980 * 120.00765 * 25 23 21 28 28 H 1.48504 * 109.46880 * 240.00328 * 25 23 21 29 29 H 1.08996 * 109.46708 * 307.81156 * 1 2 3 30 30 H 1.09004 * 109.47198 * 67.80768 * 1 2 3 31 31 H 1.08988 * 109.47005 * 187.80494 * 1 2 3 32 32 H 1.08994 * 109.60940 * 310.57385 * 4 2 1 33 33 H 1.08996 * 109.61272 * 70.91736 * 4 2 1 34 34 H 0.96996 * 120.00010 * 5.91977 * 8 6 5 35 35 H 1.07990 * 125.82584 * 0.02562 * 10 9 8 36 36 H 1.09001 * 109.47172 * 269.97978 * 13 12 11 37 37 H 1.09000 * 109.46681 * 29.97341 * 13 12 11 38 38 H 1.08998 * 109.47257 * 149.97581 * 13 12 11 39 39 H 1.09000 * 109.61420 * 185.24468 * 16 5 4 40 40 H 1.08999 * 109.61036 * 64.90358 * 16 5 4 41 41 H 1.08997 * 109.46946 * 60.00134 * 19 17 16 42 42 H 1.08999 * 109.46825 * 180.02562 * 19 17 16 43 43 H 1.08997 * 109.47455 * 300.00134 * 19 17 16 44 44 H 0.97009 * 119.99801 * 185.04590 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 6 2.0447 -0.7335 -1.2448 5 7 3.4908 -0.9541 -1.0997 6 6 4.3492 -0.5219 -2.0446 7 8 5.5310 -0.7970 -1.9640 8 7 3.8979 0.2149 -3.0789 9 6 4.7697 0.5615 -4.1307 10 6 6.1248 0.2151 -4.2280 11 7 6.5981 0.7122 -5.3422 12 7 5.5661 1.4013 -5.9919 13 6 5.6733 2.1101 -7.2695 14 6 4.4481 1.2959 -5.2273 15 17 2.8919 1.9766 -5.5860 16 6 3.9840 -1.6499 0.0971 17 6 3.4693 -0.9164 1.3419 18 1 3.9757 0.0442 1.4360 19 6 3.7371 -1.7660 2.5859 20 7 2.0233 -0.6994 1.1947 21 6 1.1511 -1.1406 2.1537 22 1 1.1694 -2.1743 2.4659 23 6 0.2434 -0.2592 2.7248 24 7 0.5009 1.0314 2.7416 25 14 -1.3435 -0.9048 3.4693 26 1 -1.3933 -2.3818 3.3242 27 1 -1.3959 -0.5473 4.9096 28 1 -2.5026 -0.2985 2.7663 29 1 -0.3632 0.6300 0.8119 30 1 -0.3634 0.3882 -0.9516 31 1 -0.3633 -1.0180 0.1395 32 1 1.5384 -1.6941 -1.3389 33 1 1.8513 -0.1296 -2.1314 34 1 2.9731 0.5069 -3.0993 35 1 6.6821 -0.3654 -3.5079 36 1 5.9597 3.1459 -7.0874 37 1 6.4287 1.6281 -7.8901 38 1 4.7115 2.0837 -7.7815 39 1 5.0740 -1.6499 0.0972 40 1 3.6182 -2.6766 0.1001 41 1 4.8088 -1.9382 2.6844 42 1 3.3701 -1.2429 3.4689 43 1 3.2226 -2.7222 2.4905 44 1 -0.0968 1.6393 3.2045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932395496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = 95.015266 kcal Electronic energy + Delta-G solvation = -28468.476505 eV Core-core repulsion = 24485.544233 eV Total energy + Delta-G solvation = -3982.932272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.136 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -41.50438 -39.93384 -37.55547 -37.08250 -34.90554 -34.27174 -33.14494 -32.62217 -31.29786 -29.42751 -27.79688 -26.83017 -26.05252 -25.51707 -23.75794 -21.96072 -21.36507 -20.43354 -19.99564 -19.10211 -18.09496 -17.43573 -16.31744 -16.17142 -15.97447 -15.23015 -14.98601 -14.70437 -14.54974 -14.48148 -13.80374 -13.71916 -13.58456 -13.34945 -13.02420 -12.96125 -12.69440 -12.17655 -12.11465 -11.87396 -11.65452 -11.57574 -11.34742 -11.11403 -10.90112 -10.80268 -10.74607 -10.53517 -10.51201 -10.40060 -10.10530 -9.96518 -9.86292 -9.60383 -9.43649 -8.48336 -8.13341 -7.68337 -6.41461 -5.84939 -3.59089 1.26431 1.40572 2.34145 2.53504 2.87251 3.24572 3.36026 3.38802 3.53166 4.03575 4.33837 4.35868 4.82392 4.87989 5.05819 5.11222 5.17811 5.21718 5.33763 5.59874 5.68673 5.85657 5.99305 6.07096 6.09265 6.15490 6.34901 6.41549 6.49625 6.51611 6.54320 6.62461 6.74277 6.76961 6.83714 7.07039 7.13471 7.27226 7.32709 7.43457 7.53085 7.81936 8.10706 8.55230 8.73810 9.10180 9.64415 10.42899 11.07351 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.003098 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.917493 B = 9036.531299 C =10187.596914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.181 3.819 3 H 0.032 0.968 4 C 0.091 3.909 5 N -0.607 5.607 6 C 0.711 3.289 7 O -0.589 6.589 8 N -0.662 5.662 9 C 0.067 3.933 10 C 0.063 3.937 11 N -0.263 5.263 12 N -0.370 5.370 13 C 0.105 3.895 14 C 0.065 3.935 15 Cl -0.005 7.005 16 C 0.118 3.882 17 C 0.154 3.846 18 H 0.029 0.971 19 C -0.126 4.126 20 N -0.575 5.575 21 C -0.273 4.273 22 H 0.055 0.945 23 C 0.043 3.957 24 N -0.871 5.871 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.288 1.288 28 H -0.284 1.284 29 H 0.088 0.912 30 H 0.024 0.976 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.408 0.592 35 H 0.217 0.783 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.762 1.204 -16.658 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.074 3.926 3 H 0.050 0.950 4 C -0.033 4.033 5 N -0.342 5.342 6 C 0.413 3.587 7 O -0.468 6.468 8 N -0.312 5.312 9 C -0.041 4.041 10 C -0.124 4.124 11 N -0.086 5.086 12 N -0.159 5.159 13 C -0.036 4.036 14 C -0.090 4.090 15 Cl 0.023 6.977 16 C -0.006 4.006 17 C 0.048 3.952 18 H 0.047 0.953 19 C -0.184 4.184 20 N -0.299 5.299 21 C -0.402 4.402 22 H 0.072 0.928 23 C -0.160 4.160 24 N -0.510 5.510 25 Si 0.708 3.292 26 H -0.197 1.197 27 H -0.215 1.215 28 H -0.210 1.210 29 H 0.107 0.893 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.233 0.767 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.319 1.364 -17.395 18.557 hybrid contribution -2.467 0.183 0.772 2.592 sum 3.852 1.547 -16.623 17.133 Atomic orbital electron populations 1.21981 0.94982 1.02872 1.00313 1.20605 0.93766 0.93553 0.84680 0.95022 1.22595 0.79738 1.01176 0.99838 1.47203 1.06473 1.59340 1.21135 1.15656 0.84988 0.78756 0.79322 1.90735 1.14877 1.63540 1.77689 1.42219 1.13339 1.55447 1.20194 1.16957 0.92122 1.04791 0.90214 1.24498 0.92221 1.00126 0.95601 1.77545 1.09866 1.12643 1.08588 1.48249 1.05256 1.43597 1.18818 1.21867 1.04336 0.96569 0.80839 1.20697 0.85172 1.07178 0.95911 1.98395 1.20958 1.83721 1.94668 1.22268 0.99376 0.95236 0.83767 1.20919 0.87200 0.95594 0.91511 0.95312 1.21625 0.98225 1.00036 0.98507 1.43931 0.99498 1.67742 1.18752 1.18626 1.12177 0.92490 1.16912 0.92778 1.25560 0.99806 0.95263 0.95397 1.70125 1.36276 1.02615 1.41937 0.86629 0.84523 0.79379 0.78654 1.19651 1.21463 1.21028 0.89303 0.95654 0.92613 0.91215 0.92394 0.75332 0.76659 0.90476 0.88769 0.89526 0.89876 0.91954 0.94376 0.91408 0.92834 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 7.84 37.16 0.29 -2.63 16 2 C 0.18 3.75 3.32 -67.48 -0.22 3.52 16 3 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.09 1.55 5.88 -3.57 -0.02 1.52 16 5 N -0.61 -10.75 2.96 -178.18 -0.53 -11.28 16 6 C 0.71 12.49 8.26 -86.92 -0.72 11.77 16 7 O -0.59 -11.35 12.96 5.27 0.07 -11.28 16 8 N -0.66 -9.97 5.37 -14.35 -0.08 -10.05 16 9 C 0.07 0.98 6.89 -83.79 -0.58 0.40 16 10 C 0.06 0.94 10.84 -17.23 -0.19 0.76 16 11 N -0.26 -3.71 12.56 30.70 0.39 -3.33 16 12 N -0.37 -4.38 4.04 -64.59 -0.26 -4.64 16 13 C 0.11 0.74 11.33 59.85 0.68 1.42 16 14 C 0.06 0.81 7.51 -16.63 -0.12 0.69 16 15 Cl -0.01 -0.05 28.56 -51.86 -1.48 -1.53 16 16 C 0.12 2.14 5.89 -3.60 -0.02 2.11 16 17 C 0.15 3.18 3.66 -67.48 -0.25 2.93 16 18 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 19 C -0.13 -2.37 8.18 37.16 0.30 -2.07 16 20 N -0.57 -13.05 2.75 -157.02 -0.43 -13.48 16 21 C -0.27 -6.71 6.60 -15.06 -0.10 -6.81 16 22 H 0.05 1.37 7.19 -52.49 -0.38 0.99 16 23 C 0.04 1.08 3.08 -17.43 -0.05 1.03 16 24 N -0.87 -23.26 12.09 55.49 0.67 -22.59 16 25 Si 0.88 19.77 29.62 -169.99 -5.04 14.73 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.09 2.08 5.09 -51.93 -0.26 1.82 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.15 7.55 -51.94 -0.39 0.75 16 32 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 33 H 0.06 0.82 5.60 -51.93 -0.29 0.53 16 34 H 0.41 5.53 6.09 -40.82 -0.25 5.28 16 35 H 0.22 3.40 5.94 -52.49 -0.31 3.09 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.46 7.84 -51.93 -0.41 0.06 16 39 H 0.08 1.49 7.02 -51.93 -0.36 1.13 16 40 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.42 7.75 -51.93 -0.40 1.02 16 43 H 0.05 0.99 7.44 -51.93 -0.39 0.61 16 44 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 LS Contribution 362.40 15.07 5.46 5.46 Total: -1.00 -29.11 362.40 -8.19 -37.30 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.96 Total: 6.04 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -1.00 Total: 14.66 kcal Atomic # 7 Polarization: -65.13 SS G_CDS: -0.24 Total: -65.37 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.07 Total: -11.28 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.04 Total: 14.73 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.48 Total: -1.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.11 -8.19 -37.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932395496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.313 kcal (2) G-P(sol) polarization free energy of solvation -29.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.49 seconds