Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.61094 * 2 1 4 4 C 1.53377 * 109.60713 * 239.49267 * 2 1 3 5 5 N 1.47001 * 108.76886 * 190.92248 * 4 2 1 6 6 C 1.34775 * 120.61387 * 235.15701 * 5 4 2 7 7 O 1.21605 * 119.99820 * 185.50614 * 6 5 4 8 8 N 1.34776 * 120.00157 * 5.49689 * 6 5 4 9 9 C 1.40940 * 120.00033 * 185.90569 * 8 6 5 10 10 C 1.40203 * 126.07980 * 359.69641 * 9 8 6 11 11 N 1.30856 * 108.35099 * 179.85273 * 10 9 8 12 12 N 1.40068 * 108.38412 * 0.40420 * 11 10 9 13 13 C 1.46497 * 126.06287 * 179.76219 * 12 11 10 14 14 C 1.35841 * 126.08217 * 180.02562 * 9 8 6 15 15 Cl 1.73603 * 126.22949 * 0.02562 * 14 9 8 16 16 C 1.46959 * 118.78916 * 54.92232 * 5 4 2 17 17 C 1.53377 * 108.77909 * 305.07272 * 16 5 4 18 18 H 1.08994 * 109.60940 * 289.59710 * 17 16 5 19 19 C 1.53000 * 109.61018 * 169.08247 * 17 16 5 20 20 N 1.46962 * 109.61065 * 120.34648 * 2 1 3 21 21 C 1.36931 * 120.59093 * 354.94777 * 20 2 1 22 22 H 1.08000 * 120.00387 * 126.34030 * 21 20 2 23 23 C 1.38815 * 120.00453 * 306.33417 * 21 20 2 24 24 N 1.31618 * 119.99583 * 335.34171 * 23 21 20 25 25 Si 1.86802 * 120.00156 * 155.33581 * 23 21 20 26 26 H 1.48495 * 109.46921 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.46980 * 120.00765 * 25 23 21 28 28 H 1.48504 * 109.46880 * 240.00328 * 25 23 21 29 29 H 1.08996 * 109.46708 * 307.81156 * 1 2 3 30 30 H 1.09004 * 109.47198 * 67.80768 * 1 2 3 31 31 H 1.08988 * 109.47005 * 187.80494 * 1 2 3 32 32 H 1.08994 * 109.60940 * 310.57385 * 4 2 1 33 33 H 1.08996 * 109.61272 * 70.91736 * 4 2 1 34 34 H 0.96996 * 120.00010 * 5.91977 * 8 6 5 35 35 H 1.07990 * 125.82584 * 0.02562 * 10 9 8 36 36 H 1.09001 * 109.47172 * 269.97978 * 13 12 11 37 37 H 1.09000 * 109.46681 * 29.97341 * 13 12 11 38 38 H 1.08998 * 109.47257 * 149.97581 * 13 12 11 39 39 H 1.09000 * 109.61420 * 185.24468 * 16 5 4 40 40 H 1.08999 * 109.61036 * 64.90358 * 16 5 4 41 41 H 1.08997 * 109.46946 * 60.00134 * 19 17 16 42 42 H 1.08999 * 109.46825 * 180.02562 * 19 17 16 43 43 H 1.08997 * 109.47455 * 300.00134 * 19 17 16 44 44 H 0.97009 * 119.99801 * 185.04590 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 6 2.0447 -0.7335 -1.2448 5 7 3.4908 -0.9541 -1.0997 6 6 4.3492 -0.5219 -2.0446 7 8 5.5310 -0.7970 -1.9640 8 7 3.8979 0.2149 -3.0789 9 6 4.7697 0.5615 -4.1307 10 6 6.1248 0.2151 -4.2280 11 7 6.5981 0.7122 -5.3422 12 7 5.5661 1.4013 -5.9919 13 6 5.6733 2.1101 -7.2695 14 6 4.4481 1.2959 -5.2273 15 17 2.8919 1.9766 -5.5860 16 6 3.9840 -1.6499 0.0971 17 6 3.4693 -0.9164 1.3419 18 1 3.9757 0.0442 1.4360 19 6 3.7371 -1.7660 2.5859 20 7 2.0233 -0.6994 1.1947 21 6 1.1511 -1.1406 2.1537 22 1 1.1694 -2.1743 2.4659 23 6 0.2434 -0.2592 2.7248 24 7 0.5009 1.0314 2.7416 25 14 -1.3435 -0.9048 3.4693 26 1 -1.3933 -2.3818 3.3242 27 1 -1.3959 -0.5473 4.9096 28 1 -2.5026 -0.2985 2.7663 29 1 -0.3632 0.6300 0.8119 30 1 -0.3634 0.3882 -0.9516 31 1 -0.3633 -1.0180 0.1395 32 1 1.5384 -1.6941 -1.3389 33 1 1.8513 -0.1296 -2.1314 34 1 2.9731 0.5069 -3.0993 35 1 6.6821 -0.3654 -3.5079 36 1 5.9597 3.1459 -7.0874 37 1 6.4287 1.6281 -7.8901 38 1 4.7115 2.0837 -7.7815 39 1 5.0740 -1.6499 0.0972 40 1 3.6182 -2.6766 0.1001 41 1 4.8088 -1.9382 2.6844 42 1 3.3701 -1.2429 3.4689 43 1 3.2226 -2.7222 2.4905 44 1 -0.0968 1.6393 3.2045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932395496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = 77.257810 kcal Electronic energy + Delta-G solvation = -28469.246526 eV Core-core repulsion = 24485.544233 eV Total energy + Delta-G solvation = -3983.702293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.136 amu Computer time = 5.25 seconds Orbital eigenvalues (eV) -42.57108 -41.26825 -39.10675 -37.99181 -36.13694 -35.84991 -34.57319 -33.72752 -33.07242 -30.51191 -29.46298 -27.91966 -27.48287 -26.97330 -25.38447 -23.11947 -22.45235 -22.02052 -21.46124 -20.56659 -19.34426 -18.62008 -17.86800 -17.46397 -17.01521 -16.83342 -16.34535 -16.26852 -15.97654 -15.73412 -15.38339 -15.12104 -14.79192 -14.58451 -14.36530 -13.83961 -13.66909 -13.58128 -13.35233 -13.24604 -13.07642 -12.94191 -12.76456 -12.71161 -12.42851 -12.27911 -12.19384 -12.16094 -11.92225 -11.89631 -11.70900 -11.61377 -11.49570 -11.08947 -10.38679 -10.22549 -9.73382 -8.81543 -8.29601 -7.71091 -5.52901 0.30583 0.39975 1.32266 1.38059 1.44748 1.52314 1.59780 1.76085 2.21643 2.50498 2.77192 3.22738 3.47059 3.54843 3.91246 4.07539 4.14771 4.20154 4.35518 4.38648 4.48956 4.50841 4.53131 4.61383 4.65372 4.79898 4.87042 4.90153 4.98799 4.99748 5.03823 5.22436 5.38385 5.45549 5.56892 5.62088 5.63831 5.66267 5.78750 5.88258 5.93341 6.36736 6.62224 6.80149 7.26365 7.40037 7.81298 8.56369 9.15168 Molecular weight = 341.14amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.003098 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.917493 B = 9036.531299 C =10187.596914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.179 3.821 3 H 0.001 0.999 4 C 0.104 3.896 5 N -0.613 5.613 6 C 0.708 3.292 7 O -0.609 6.609 8 N -0.651 5.651 9 C 0.036 3.964 10 C 0.047 3.953 11 N -0.276 5.276 12 N -0.360 5.360 13 C 0.091 3.909 14 C 0.078 3.922 15 Cl 0.021 6.979 16 C 0.130 3.870 17 C 0.150 3.850 18 H -0.001 1.001 19 C -0.116 4.116 20 N -0.589 5.589 21 C -0.268 4.268 22 H 0.050 0.950 23 C 0.008 3.992 24 N -0.906 5.906 25 Si 0.933 3.067 26 H -0.265 1.265 27 H -0.296 1.296 28 H -0.283 1.283 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.415 0.585 35 H 0.203 0.797 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.057 0.943 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 0.907 -19.095 19.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.072 3.928 3 H 0.019 0.981 4 C -0.020 4.020 5 N -0.347 5.347 6 C 0.410 3.590 7 O -0.490 6.490 8 N -0.302 5.302 9 C -0.071 4.071 10 C -0.139 4.139 11 N -0.100 5.100 12 N -0.149 5.149 13 C -0.048 4.048 14 C -0.078 4.078 15 Cl 0.049 6.951 16 C 0.006 3.994 17 C 0.044 3.956 18 H 0.016 0.984 19 C -0.174 4.174 20 N -0.314 5.314 21 C -0.398 4.398 22 H 0.067 0.933 23 C -0.193 4.193 24 N -0.546 5.546 25 Si 0.760 3.240 26 H -0.189 1.189 27 H -0.223 1.223 28 H -0.210 1.210 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.219 0.781 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.727 1.069 -19.884 20.720 hybrid contribution -2.237 0.385 1.407 2.671 sum 3.490 1.454 -18.476 18.859 Atomic orbital electron populations 1.21856 0.94603 1.02005 1.00998 1.20595 0.94156 0.92294 0.85754 0.98103 1.22418 0.79182 1.01569 0.98854 1.47209 1.06810 1.59550 1.21112 1.15735 0.84647 0.78863 0.79706 1.90730 1.15722 1.64290 1.78256 1.41986 1.13675 1.54813 1.19736 1.17086 0.92106 1.06812 0.91123 1.24296 0.92676 1.00868 0.96025 1.77496 1.10699 1.13275 1.08563 1.48714 1.04416 1.42294 1.19462 1.22346 1.06231 0.97141 0.79125 1.20820 0.86267 1.05648 0.95057 1.98410 1.19083 1.83163 1.94438 1.22024 0.99356 0.95204 0.82833 1.20990 0.86097 0.94858 0.93668 0.98354 1.21514 1.00104 0.99290 0.96448 1.44205 1.00151 1.67721 1.19354 1.18725 1.12106 0.92140 1.16856 0.93302 1.26033 1.01901 0.95248 0.96069 1.70225 1.37192 1.03666 1.43552 0.85805 0.81700 0.79096 0.77362 1.18901 1.22291 1.20952 0.92447 0.92186 0.93003 0.90260 0.89293 0.74539 0.78065 0.88767 0.87305 0.87398 0.89681 0.90939 0.91480 0.94171 0.92441 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 7.84 71.98 0.56 -4.86 16 2 C 0.18 7.35 3.32 45.03 0.15 7.50 16 3 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 4 C 0.10 3.34 5.88 86.41 0.51 3.85 16 5 N -0.61 -21.09 2.96 -835.90 -2.47 -23.56 16 6 C 0.71 24.38 8.26 179.06 1.48 25.86 16 7 O -0.61 -23.48 12.96 -4.05 -0.05 -23.53 16 8 N -0.65 -18.80 5.37 -317.57 -1.70 -20.50 16 9 C 0.04 1.01 6.89 37.60 0.26 1.27 16 10 C 0.05 1.42 10.84 85.32 0.92 2.34 16 11 N -0.28 -7.51 12.56 -56.80 -0.71 -8.22 16 12 N -0.36 -7.73 4.04 -358.28 -1.45 -9.17 16 13 C 0.09 0.99 11.33 127.77 1.45 2.43 16 14 C 0.08 1.80 7.51 83.51 0.63 2.42 16 15 Cl 0.02 0.37 28.56 -2.72 -0.08 0.29 16 16 C 0.13 4.64 5.89 86.42 0.51 5.15 16 17 C 0.15 6.25 3.66 45.03 0.16 6.42 16 18 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 19 C -0.12 -4.36 8.18 71.98 0.59 -3.77 16 20 N -0.59 -26.96 2.75 -650.69 -1.79 -28.75 16 21 C -0.27 -13.27 6.60 84.04 0.56 -12.72 16 22 H 0.05 2.46 7.19 -2.91 -0.02 2.44 16 23 C 0.01 0.39 3.08 84.86 0.26 0.65 16 24 N -0.91 -49.59 12.09 21.65 0.26 -49.33 16 25 Si 0.93 40.89 29.62 68.60 2.03 42.92 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.30 -13.26 7.11 99.48 0.71 -12.55 16 28 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 29 H 0.06 2.69 5.09 -2.39 -0.01 2.68 16 30 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.05 2.07 7.55 -2.39 -0.02 2.05 16 32 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 33 H 0.09 2.28 5.60 -2.39 -0.01 2.27 16 34 H 0.41 10.38 6.09 -92.71 -0.56 9.81 16 35 H 0.20 6.54 5.94 -2.92 -0.02 6.52 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.11 0.75 7.84 -2.39 -0.02 0.73 16 39 H 0.08 3.01 7.02 -2.39 -0.02 2.99 16 40 H 0.07 2.45 8.11 -2.39 -0.02 2.43 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.04 1.71 7.75 -2.39 -0.02 1.69 16 43 H 0.06 2.10 7.44 -2.39 -0.02 2.08 16 44 H 0.25 13.44 8.32 -92.70 -0.77 12.67 16 Total: -1.00 -64.11 362.40 2.55 -61.56 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.48 Total: 21.74 kcal Atomic # 6 Polarization: 28.50 SS G_CDS: 8.04 Total: 36.54 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -7.87 Total: -139.53 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.05 Total: -23.53 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -64.11 2.55 -61.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932395496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.819 kcal (2) G-P(sol) polarization free energy of solvation -64.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.25 seconds