Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47273 * 274.13500 * 3 2 1 5 5 H 1.48499 * 109.47281 * 34.14177 * 3 2 1 6 6 H 1.48505 * 109.46819 * 154.13901 * 3 2 1 7 7 C 1.38813 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99553 * 170.42365 * 7 2 1 9 9 N 1.36934 * 120.00225 * 350.42105 * 7 2 1 10 10 C 1.47024 * 125.65241 * 169.94415 * 9 7 2 11 11 C 1.54323 * 107.27426 * 178.98796 * 10 9 7 12 12 H 1.08994 * 110.71648 * 96.16753 * 11 10 9 13 13 C 1.52996 * 110.71814 * 219.44115 * 11 10 9 14 14 N 1.46491 * 109.47603 * 288.52260 * 13 11 10 15 15 C 1.34775 * 120.00172 * 180.02562 * 14 13 11 16 16 O 1.21544 * 120.00174 * 359.97438 * 15 14 13 17 17 C 1.47885 * 119.99627 * 180.02562 * 15 14 13 18 18 C 1.40569 * 119.71216 * 359.97438 * 17 15 14 19 19 C 1.35816 * 120.74006 * 179.97438 * 18 17 15 20 20 C 1.40546 * 119.98278 * 0.02562 * 19 18 17 21 21 C 1.40813 * 121.13936 * 179.97438 * 20 19 18 22 22 C 1.36557 * 118.20320 * 180.08688 * 21 20 19 23 23 C 1.39411 * 119.93869 * 359.91726 * 22 21 20 24 24 N 1.31026 * 121.71101 * 0.06081 * 23 22 21 25 25 C 1.33740 * 121.35248 * 359.97438 * 24 23 22 26 26 C 1.38416 * 119.70309 * 179.72428 * 17 15 14 27 27 C 1.55160 * 102.94087 * 337.80606 * 11 10 9 28 28 H 1.09000 * 111.00609 * 277.39270 * 27 11 10 29 29 O 1.42894 * 111.00227 * 153.57846 * 27 11 10 30 30 C 1.47427 * 125.64582 * 349.99849 * 9 7 2 31 31 H 0.97007 * 119.99553 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.88117 * 59.56408 * 10 9 7 33 33 H 1.08997 * 109.87922 * 298.40576 * 10 9 7 34 34 H 1.09002 * 109.46901 * 48.52758 * 13 11 10 35 35 H 1.09004 * 109.47069 * 168.51493 * 13 11 10 36 36 H 0.97001 * 119.99748 * 359.97438 * 14 13 11 37 37 H 1.08006 * 119.62882 * 359.96359 * 18 17 15 38 38 H 1.08002 * 120.01147 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.89780 * 0.02562 * 21 20 19 40 40 H 1.07998 * 120.03074 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.14821 * 180.02562 * 23 22 21 42 42 H 1.07997 * 120.23286 * 0.02616 * 26 17 15 43 43 H 0.96701 * 113.99984 * 180.02562 * 29 27 11 44 44 H 1.08993 * 110.36934 * 85.24599 * 30 9 7 45 45 H 1.08996 * 110.36696 * 322.91899 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4103 2.0969 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2088 -0.1551 9 7 1.3399 -2.3797 0.1984 10 6 1.9019 -3.7264 0.0189 11 6 0.7930 -4.7375 0.3789 12 1 0.2725 -5.0744 -0.5176 13 6 1.3729 -5.9256 1.1488 14 7 2.1660 -6.7565 0.2396 15 6 2.7763 -7.8663 0.7004 16 8 2.6690 -8.1776 1.8704 17 6 3.5773 -8.7047 -0.2175 18 6 3.6977 -8.3387 -1.5693 19 6 4.4286 -9.0931 -2.4303 20 6 5.0744 -10.2545 -1.9725 21 6 5.8378 -11.0547 -2.8440 22 6 6.4381 -12.1711 -2.3359 23 6 6.2869 -12.4895 -0.9870 24 7 5.5763 -11.7425 -0.1785 25 6 4.9621 -10.6365 -0.6125 26 6 4.2062 -9.8401 0.2635 27 6 -0.1545 -3.9065 1.2840 28 1 0.2102 -3.8796 2.3109 29 8 -1.4893 -4.4137 1.2305 30 6 -0.0654 -2.5070 0.6256 31 1 -0.4850 0.8401 -0.0004 32 1 2.7569 -3.8625 0.6811 33 1 2.2077 -3.8652 -1.0180 34 1 2.0088 -5.5604 1.9553 35 1 0.5600 -6.5190 1.5675 36 1 2.2513 -6.5083 -0.6942 37 1 3.2034 -7.4477 -1.9273 38 1 4.5129 -8.8012 -3.4667 39 1 5.9449 -10.7932 -3.8865 40 1 7.0301 -12.8062 -2.9781 41 1 6.7676 -13.3751 -0.5986 42 1 4.1129 -10.1140 1.3040 43 1 -2.1177 -3.9259 1.7802 44 1 -0.7305 -2.4503 -0.2360 45 1 -0.3137 -1.7308 1.3494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958503862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -1.250029 kcal Electronic energy + Delta-G solvation = -28193.995475 eV Core-core repulsion = 24177.028925 eV Total energy + Delta-G solvation = -4016.966550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.24452 -39.81043 -38.30141 -37.00584 -35.24878 -34.73675 -33.85320 -32.38330 -31.19859 -30.37117 -29.63994 -27.63629 -25.99349 -24.86535 -24.24467 -23.32787 -22.38892 -21.22586 -20.41024 -19.92234 -18.61345 -17.87614 -17.29014 -17.01140 -16.79257 -16.27567 -15.73324 -15.40846 -15.00245 -14.84904 -14.68412 -14.38000 -14.24426 -13.99585 -13.90005 -13.69276 -13.43323 -13.07404 -12.91378 -12.47043 -12.21738 -12.04139 -12.00810 -11.87423 -11.67517 -11.21360 -11.03379 -10.94171 -10.83515 -10.66798 -10.20847 -10.08231 -9.90874 -9.87787 -9.78558 -9.25189 -9.23621 -8.99562 -8.67733 -8.65278 -6.91311 -5.83391 -3.17405 -0.10061 0.27054 1.52718 2.18008 3.03526 3.12297 3.34433 3.40663 3.42629 3.77818 3.90306 4.16256 4.29850 4.38481 4.45639 4.49862 4.58640 4.65803 4.75596 4.80285 5.00626 5.08904 5.16993 5.37831 5.39977 5.44193 5.48187 5.52502 5.62715 5.66421 5.86196 5.87870 5.94987 5.98337 6.00756 6.10232 6.15620 6.29177 6.35938 6.42443 6.54917 6.76779 7.27840 7.44437 7.45419 7.50825 7.66960 8.09004 8.13358 8.18163 9.08986 9.70939 10.36586 11.29320 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017066 B = 0.002134 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.303417 B =13116.046804 C =14141.573993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.140 3.860 11 C -0.104 4.104 12 H 0.088 0.912 13 C 0.133 3.867 14 N -0.716 5.716 15 C 0.555 3.445 16 O -0.535 6.535 17 C -0.113 4.113 18 C -0.089 4.089 19 C -0.100 4.100 20 C -0.088 4.088 21 C -0.060 4.060 22 C -0.170 4.170 23 C 0.129 3.871 24 N -0.466 5.466 25 C 0.116 3.884 26 C -0.024 4.024 27 C 0.080 3.920 28 H 0.061 0.939 29 O -0.568 6.568 30 C 0.149 3.851 31 H 0.254 0.746 32 H 0.030 0.970 33 H 0.025 0.975 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.401 0.599 37 H 0.135 0.865 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.377 0.623 44 H 0.037 0.963 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.654 -22.454 -5.774 24.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.014 3.986 11 C -0.124 4.124 12 H 0.106 0.894 13 C 0.009 3.991 14 N -0.368 5.368 15 C 0.342 3.658 16 O -0.413 6.413 17 C -0.118 4.118 18 C -0.108 4.108 19 C -0.118 4.118 20 C -0.090 4.090 21 C -0.086 4.086 22 C -0.190 4.190 23 C -0.045 4.045 24 N -0.174 5.174 25 C -0.004 4.004 26 C -0.044 4.044 27 C 0.020 3.980 28 H 0.079 0.921 29 O -0.372 6.372 30 C 0.024 3.976 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.237 0.763 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.224 0.776 44 H 0.055 0.945 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.624 -22.978 -4.416 24.937 hybrid contribution 0.355 1.689 -1.183 2.093 sum 8.979 -21.288 -5.599 23.773 Atomic orbital electron populations 1.69950 1.05010 1.25351 1.56140 1.24851 0.95667 0.97956 1.01852 0.86108 0.78779 0.83316 0.77571 1.21533 1.21545 1.20523 1.19020 0.91178 0.82588 1.43217 0.90435 1.44296 1.09197 0.99871 1.79349 1.21399 0.93808 0.85523 0.97838 1.22395 0.96726 0.94078 0.99155 0.89415 1.21485 0.94517 0.90849 0.92208 1.45953 1.51522 1.25355 1.13953 1.18146 0.79438 0.80846 0.87406 1.90787 1.61947 1.71401 1.17165 1.19963 1.00772 0.96896 0.94155 1.21034 0.97916 0.99668 0.92136 1.20892 0.96987 0.93654 1.00295 1.18975 0.98943 0.96743 0.94352 1.21537 0.93826 0.93428 0.99837 1.21974 1.01344 0.98411 0.97231 1.23026 0.93614 0.97763 0.90083 1.68038 1.07317 1.04163 1.37852 1.18769 0.97412 0.93265 0.90999 1.21251 0.91677 0.91088 1.00354 1.23276 0.81449 0.95656 0.97666 0.92087 1.86382 1.19418 1.59173 1.72259 1.22013 0.86579 0.91230 0.97791 0.93593 0.95250 0.95708 0.90957 0.90891 0.76325 0.84767 0.84461 0.84080 0.84294 0.82157 0.83113 0.77608 0.94521 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.68 55.49 0.59 -25.68 16 2 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.59 29.56 -169.99 -5.03 16.56 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.23 -6.30 10.24 -15.06 -0.15 -6.45 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 N -0.60 -14.79 3.39 -170.07 -0.58 -15.37 16 10 C 0.14 2.74 6.75 -3.06 -0.02 2.72 16 11 C -0.10 -1.74 2.70 -88.79 -0.24 -1.98 16 12 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 13 C 0.13 1.98 5.02 -4.05 -0.02 1.96 16 14 N -0.72 -9.32 5.42 -61.24 -0.33 -9.65 16 15 C 0.56 7.90 7.77 -12.31 -0.10 7.80 16 16 O -0.54 -9.45 16.30 5.33 0.09 -9.36 16 17 C -0.11 -1.34 5.87 -105.00 -0.62 -1.96 16 18 C -0.09 -0.82 9.44 -39.57 -0.37 -1.20 16 19 C -0.10 -0.81 9.74 -39.58 -0.39 -1.19 16 20 C -0.09 -0.82 5.75 -106.73 -0.61 -1.43 16 21 C -0.06 -0.40 9.88 -39.22 -0.39 -0.79 16 22 C -0.17 -1.00 10.03 -39.75 -0.40 -1.40 16 23 C 0.13 0.97 11.15 -17.46 -0.19 0.78 16 24 N -0.47 -5.17 10.34 -10.98 -0.11 -5.28 16 25 C 0.12 1.33 6.60 -84.87 -0.56 0.77 16 26 C -0.02 -0.30 9.56 -38.68 -0.37 -0.67 16 27 C 0.08 1.46 3.88 -24.58 -0.10 1.36 16 28 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 29 O -0.57 -9.47 13.47 -35.23 -0.47 -9.95 16 30 C 0.15 3.47 5.16 -2.52 -0.01 3.46 16 31 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 32 H 0.03 0.57 7.68 -51.93 -0.40 0.17 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.40 4.29 6.45 -40.82 -0.26 4.03 16 37 H 0.13 0.96 6.34 -52.48 -0.33 0.63 16 38 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.15 1.96 7.60 -52.49 -0.40 1.56 16 43 H 0.38 4.84 9.12 45.56 0.42 5.25 16 44 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 45 H 0.07 1.83 6.93 -51.93 -0.36 1.47 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -34.81 376.40 -9.90 -44.71 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.09 Total: 6.83 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -4.63 Total: 1.52 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.43 Total: -55.99 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.39 Total: -19.31 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.81 -9.90 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958503862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.462 kcal (2) G-P(sol) polarization free energy of solvation -34.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds