Wall clock time and date at job start Sat Apr 11 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48499 * 109.47273 * 274.13500 * 3 2 1 5 5 H 1.48499 * 109.47281 * 34.14177 * 3 2 1 6 6 H 1.48505 * 109.46819 * 154.13901 * 3 2 1 7 7 C 1.38813 * 119.99691 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99553 * 170.42365 * 7 2 1 9 9 N 1.36934 * 120.00225 * 350.42105 * 7 2 1 10 10 C 1.47024 * 125.65241 * 169.94415 * 9 7 2 11 11 C 1.54323 * 107.27426 * 178.98796 * 10 9 7 12 12 H 1.08994 * 110.71648 * 96.16753 * 11 10 9 13 13 C 1.52996 * 110.71814 * 219.44115 * 11 10 9 14 14 N 1.46491 * 109.47603 * 288.52260 * 13 11 10 15 15 C 1.34775 * 120.00172 * 180.02562 * 14 13 11 16 16 O 1.21544 * 120.00174 * 359.97438 * 15 14 13 17 17 C 1.47885 * 119.99627 * 180.02562 * 15 14 13 18 18 C 1.40569 * 119.71216 * 359.97438 * 17 15 14 19 19 C 1.35816 * 120.74006 * 179.97438 * 18 17 15 20 20 C 1.40546 * 119.98278 * 0.02562 * 19 18 17 21 21 C 1.40813 * 121.13936 * 179.97438 * 20 19 18 22 22 C 1.36557 * 118.20320 * 180.08688 * 21 20 19 23 23 C 1.39411 * 119.93869 * 359.91726 * 22 21 20 24 24 N 1.31026 * 121.71101 * 0.06081 * 23 22 21 25 25 C 1.33740 * 121.35248 * 359.97438 * 24 23 22 26 26 C 1.38416 * 119.70309 * 179.72428 * 17 15 14 27 27 C 1.55160 * 102.94087 * 337.80606 * 11 10 9 28 28 H 1.09000 * 111.00609 * 277.39270 * 27 11 10 29 29 O 1.42894 * 111.00227 * 153.57846 * 27 11 10 30 30 C 1.47427 * 125.64582 * 349.99849 * 9 7 2 31 31 H 0.97007 * 119.99553 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.88117 * 59.56408 * 10 9 7 33 33 H 1.08997 * 109.87922 * 298.40576 * 10 9 7 34 34 H 1.09002 * 109.46901 * 48.52758 * 13 11 10 35 35 H 1.09004 * 109.47069 * 168.51493 * 13 11 10 36 36 H 0.97001 * 119.99748 * 359.97438 * 14 13 11 37 37 H 1.08006 * 119.62882 * 359.96359 * 18 17 15 38 38 H 1.08002 * 120.01147 * 179.97438 * 19 18 17 39 39 H 1.08006 * 120.89780 * 0.02562 * 21 20 19 40 40 H 1.07998 * 120.03074 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.14821 * 180.02562 * 23 22 21 42 42 H 1.07997 * 120.23286 * 0.02616 * 26 17 15 43 43 H 0.96701 * 113.99984 * 180.02562 * 29 27 11 44 44 H 1.08993 * 110.36934 * 85.24599 * 30 9 7 45 45 H 1.08996 * 110.36696 * 322.91899 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4103 2.0969 -1.3964 5 1 1.4942 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2088 -0.1551 9 7 1.3399 -2.3797 0.1984 10 6 1.9019 -3.7264 0.0189 11 6 0.7930 -4.7375 0.3789 12 1 0.2725 -5.0744 -0.5176 13 6 1.3729 -5.9256 1.1488 14 7 2.1660 -6.7565 0.2396 15 6 2.7763 -7.8663 0.7004 16 8 2.6690 -8.1776 1.8704 17 6 3.5773 -8.7047 -0.2175 18 6 3.6977 -8.3387 -1.5693 19 6 4.4286 -9.0931 -2.4303 20 6 5.0744 -10.2545 -1.9725 21 6 5.8378 -11.0547 -2.8440 22 6 6.4381 -12.1711 -2.3359 23 6 6.2869 -12.4895 -0.9870 24 7 5.5763 -11.7425 -0.1785 25 6 4.9621 -10.6365 -0.6125 26 6 4.2062 -9.8401 0.2635 27 6 -0.1545 -3.9065 1.2840 28 1 0.2102 -3.8796 2.3109 29 8 -1.4893 -4.4137 1.2305 30 6 -0.0654 -2.5070 0.6256 31 1 -0.4850 0.8401 -0.0004 32 1 2.7569 -3.8625 0.6811 33 1 2.2077 -3.8652 -1.0180 34 1 2.0088 -5.5604 1.9553 35 1 0.5600 -6.5190 1.5675 36 1 2.2513 -6.5083 -0.6942 37 1 3.2034 -7.4477 -1.9273 38 1 4.5129 -8.8012 -3.4667 39 1 5.9449 -10.7932 -3.8865 40 1 7.0301 -12.8062 -2.9781 41 1 6.7676 -13.3751 -0.5986 42 1 4.1129 -10.1140 1.3040 43 1 -2.1177 -3.9259 1.7802 44 1 -0.7305 -2.4503 -0.2360 45 1 -0.3137 -1.7308 1.3494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958503862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:35 Heat of formation + Delta-G solvation = -27.250463 kcal Electronic energy + Delta-G solvation = -28195.122938 eV Core-core repulsion = 24177.028925 eV Total energy + Delta-G solvation = -4018.094013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.95277 -40.88933 -39.79548 -37.76653 -36.67258 -36.20956 -34.48133 -34.10021 -32.20044 -31.08403 -31.04634 -29.30904 -27.45553 -26.11581 -24.88657 -24.64898 -23.12310 -22.50511 -21.88973 -21.33158 -19.59609 -18.84773 -18.63272 -18.26703 -17.87003 -17.20197 -16.99804 -16.70294 -16.51345 -15.75179 -15.74301 -15.49699 -15.32197 -15.05679 -14.82707 -14.73684 -14.58139 -14.41635 -14.06520 -13.92223 -13.64640 -13.34893 -13.06333 -12.95759 -12.78990 -12.73720 -12.55016 -12.38025 -12.33152 -11.93993 -11.86180 -11.56731 -11.51791 -11.17053 -10.82516 -10.69885 -10.49994 -10.26078 -9.82875 -9.34411 -8.90152 -7.90491 -5.26244 -0.79406 -0.37471 0.85452 1.42858 1.46554 1.47859 1.57404 1.96187 2.23667 2.47183 3.07915 3.15701 3.26466 3.29990 3.51368 3.58081 3.61505 3.72429 3.83498 3.88784 3.94669 4.04127 4.06510 4.09067 4.27515 4.40554 4.45268 4.57328 4.57665 4.72749 4.73294 4.86516 4.87718 4.93538 4.96573 5.08453 5.15454 5.21200 5.30437 5.31960 5.38772 5.48134 5.51212 5.65715 5.76846 6.15622 6.40740 6.87147 6.90234 7.04691 7.05883 7.71669 8.36819 9.20999 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017066 B = 0.002134 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.303417 B =13116.046804 C =14141.573993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.622 5.622 10 C 0.138 3.862 11 C -0.086 4.086 12 H 0.096 0.904 13 C 0.145 3.855 14 N -0.705 5.705 15 C 0.555 3.445 16 O -0.578 6.578 17 C -0.121 4.121 18 C -0.100 4.100 19 C -0.084 4.084 20 C -0.101 4.101 21 C -0.059 4.059 22 C -0.162 4.162 23 C 0.127 3.873 24 N -0.512 5.512 25 C 0.093 3.907 26 C -0.048 4.048 27 C 0.096 3.904 28 H 0.071 0.929 29 O -0.568 6.568 30 C 0.157 3.843 31 H 0.249 0.751 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.414 0.586 37 H 0.156 0.844 38 H 0.176 0.824 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.188 0.812 42 H 0.126 0.874 43 H 0.394 0.606 44 H 0.004 0.996 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.514 -23.961 -8.386 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.350 5.350 10 C 0.014 3.986 11 C -0.106 4.106 12 H 0.114 0.886 13 C 0.021 3.979 14 N -0.357 5.357 15 C 0.343 3.657 16 O -0.459 6.459 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.102 4.102 20 C -0.104 4.104 21 C -0.084 4.084 22 C -0.181 4.181 23 C -0.046 4.046 24 N -0.220 5.220 25 C -0.027 4.027 26 C -0.068 4.068 27 C 0.035 3.965 28 H 0.088 0.912 29 O -0.375 6.375 30 C 0.031 3.969 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.173 0.827 38 H 0.193 0.807 39 H 0.196 0.804 40 H 0.196 0.804 41 H 0.205 0.795 42 H 0.144 0.856 43 H 0.244 0.756 44 H 0.022 0.978 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 10.490 -24.500 -7.050 27.568 hybrid contribution -0.142 2.004 -0.430 2.054 sum 10.348 -22.497 -7.481 25.868 Atomic orbital electron populations 1.70142 1.06360 1.25583 1.57483 1.25667 0.96516 1.01157 1.02320 0.85093 0.77829 0.79165 0.77390 1.21224 1.22042 1.19397 1.19399 0.91713 0.83857 1.42275 0.89965 1.44581 1.09732 1.01165 1.79504 1.21552 0.94647 0.83829 0.98610 1.22219 0.95435 0.93654 0.99246 0.88607 1.21212 0.94474 0.90226 0.91956 1.45790 1.50843 1.24736 1.14367 1.18537 0.79076 0.80867 0.87180 1.90758 1.63555 1.72480 1.19131 1.19810 1.01075 0.96585 0.95101 1.21219 0.98879 1.00859 0.90874 1.21320 0.94895 0.92340 1.01666 1.19296 0.99589 0.97705 0.93767 1.22008 0.92458 0.92844 1.01105 1.22416 1.00602 0.98411 0.96701 1.23680 0.92159 0.97753 0.91037 1.68014 1.09249 1.05130 1.39647 1.18859 0.98028 0.93716 0.92113 1.21162 0.93491 0.92346 0.99764 1.22974 0.82741 0.92920 0.97878 0.91151 1.86356 1.19028 1.59145 1.72940 1.21791 0.85656 0.93412 0.95994 0.94201 0.94766 0.94445 0.91802 0.90981 0.74741 0.82677 0.80696 0.80407 0.80369 0.79529 0.85585 0.75602 0.97767 0.94227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.69 10.68 21.65 0.23 -55.46 16 2 C -0.06 -3.51 5.40 84.86 0.46 -3.05 16 3 Si 0.98 44.73 29.56 68.60 2.03 46.76 16 4 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.24 -13.28 10.24 84.03 0.86 -12.42 16 8 H 0.08 4.29 7.85 -2.91 -0.02 4.26 16 9 N -0.62 -30.87 3.39 -691.99 -2.35 -33.22 16 10 C 0.14 5.28 6.75 86.73 0.59 5.86 16 11 C -0.09 -2.78 2.70 -9.61 -0.03 -2.81 16 12 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 13 C 0.15 4.21 5.02 86.38 0.43 4.65 16 14 N -0.71 -17.75 5.42 -465.96 -2.52 -20.28 16 15 C 0.56 16.09 7.77 86.80 0.67 16.77 16 16 O -0.58 -21.41 16.30 -3.85 -0.06 -21.47 16 17 C -0.12 -2.92 5.87 -20.11 -0.12 -3.04 16 18 C -0.10 -1.67 9.44 22.28 0.21 -1.46 16 19 C -0.08 -1.11 9.74 22.27 0.22 -0.89 16 20 C -0.10 -1.66 5.75 -21.23 -0.12 -1.79 16 21 C -0.06 -0.55 9.88 22.51 0.22 -0.32 16 22 C -0.16 -1.28 10.03 22.16 0.22 -1.06 16 23 C 0.13 1.68 11.15 85.10 0.95 2.62 16 24 N -0.51 -11.44 10.34 -188.66 -1.95 -13.39 16 25 C 0.09 2.15 6.60 40.25 0.27 2.41 16 26 C -0.05 -1.26 9.56 22.85 0.22 -1.04 16 27 C 0.10 3.45 3.88 31.99 0.12 3.57 16 28 H 0.07 2.44 8.05 -2.39 -0.02 2.42 16 29 O -0.57 -18.35 13.47 -148.98 -2.01 -20.35 16 30 C 0.16 7.48 5.16 86.86 0.45 7.92 16 31 H 0.25 14.22 8.31 -92.70 -0.77 13.44 16 32 H 0.03 1.29 7.68 -2.39 -0.02 1.27 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 2.00 7.93 -2.39 -0.02 1.98 16 35 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.41 8.11 6.45 -92.71 -0.60 7.51 16 37 H 0.16 1.80 6.34 -2.91 -0.02 1.78 16 38 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 39 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 40 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 41 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 42 H 0.13 3.77 7.60 -2.91 -0.02 3.74 16 43 H 0.39 9.75 9.12 -74.06 -0.68 9.07 16 44 H 0.00 0.23 8.07 -2.39 -0.02 0.21 16 45 H 0.04 2.10 6.93 -2.39 -0.02 2.08 16 Total: -1.00 -79.67 376.40 -1.24 -80.91 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -0.23 Total: 20.58 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.62 Total: 15.92 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -6.59 Total: -122.34 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -2.07 Total: -41.82 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -79.67 -1.24 -80.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958503862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.659 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds