Wall clock time and date at job start Sat Apr 11 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48496 * 109.47207 * 264.53780 * 3 2 1 5 5 H 1.48495 * 109.46917 * 24.54019 * 3 2 1 6 6 H 1.48502 * 109.46709 * 144.53664 * 3 2 1 7 7 C 1.38814 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00209 * 337.61630 * 7 2 1 9 9 N 1.36931 * 120.00300 * 157.61656 * 7 2 1 10 10 C 1.47427 * 125.64601 * 341.47281 * 9 7 2 11 11 C 1.54906 * 104.83202 * 204.16213 * 10 9 7 12 12 H 1.09012 * 111.00508 * 204.91371 * 11 10 9 13 13 O 1.42896 * 111.00359 * 81.06943 * 11 10 9 14 14 C 1.55150 * 101.58390 * 322.99055 * 11 10 9 15 15 H 1.09003 * 110.87257 * 277.06625 * 14 11 10 16 16 C 1.53003 * 110.72050 * 153.86449 * 14 11 10 17 17 N 1.46504 * 109.47223 * 180.02562 * 16 14 11 18 18 C 1.34770 * 119.99904 * 179.97438 * 17 16 14 19 19 O 1.21549 * 120.00394 * 359.97438 * 18 17 16 20 20 C 1.47887 * 119.99972 * 179.97438 * 18 17 16 21 21 C 1.40581 * 119.70527 * 0.02562 * 20 18 17 22 22 C 1.35807 * 120.73502 * 179.97438 * 21 20 18 23 23 C 1.40549 * 119.98536 * 359.97438 * 22 21 20 24 24 C 1.40817 * 121.13608 * 180.02562 * 23 22 21 25 25 C 1.36556 * 118.19926 * 179.97438 * 24 23 22 26 26 C 1.39417 * 119.93750 * 0.03726 * 25 24 23 27 27 N 1.31021 * 121.71449 * 359.97438 * 26 25 24 28 28 C 1.33750 * 121.34999 * 359.97438 * 27 26 25 29 29 C 1.38409 * 119.70811 * 179.72293 * 20 18 17 30 30 C 1.47019 * 125.65485 * 161.51275 * 9 7 2 31 31 H 0.97001 * 119.99732 * 359.97438 * 1 2 3 32 32 H 1.08996 * 110.36932 * 323.00224 * 10 9 7 33 33 H 1.09004 * 110.36648 * 85.21360 * 10 9 7 34 34 H 0.96706 * 114.00559 * 67.80271 * 13 11 10 35 35 H 1.09002 * 109.47091 * 300.02304 * 16 14 11 36 36 H 1.09002 * 109.47318 * 60.02587 * 16 14 11 37 37 H 0.97000 * 119.99489 * 0.02562 * 17 16 14 38 38 H 1.07995 * 119.62970 * 359.97438 * 21 20 18 39 39 H 1.07999 * 120.01030 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.90585 * 359.97438 * 24 23 22 41 41 H 1.07997 * 120.02996 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.14609 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.23151 * 0.02562 * 29 20 18 44 44 H 1.09005 * 109.88022 * 59.48540 * 30 9 7 45 45 H 1.08998 * 109.88259 * 298.32785 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6131 1.9798 -1.3937 5 1 1.3947 2.6831 0.5815 6 1 3.4853 1.4761 0.8123 7 6 2.0103 -1.2022 -0.0005 8 1 1.5313 -2.1025 0.3552 9 7 3.3022 -1.2467 -0.4521 10 6 3.9503 -0.2324 -1.3033 11 6 5.0948 -0.9899 -2.0214 12 1 5.8894 -0.3057 -2.3198 13 8 4.5998 -1.7183 -3.1468 14 6 5.5797 -1.9525 -0.9054 15 1 6.2743 -1.4489 -0.2330 16 6 6.2241 -3.2015 -1.5100 17 7 6.6707 -4.0901 -0.4342 18 6 7.2712 -5.2594 -0.7317 19 8 7.4419 -5.5770 -1.8925 20 6 7.7225 -6.1561 0.3542 21 6 7.5215 -5.7830 1.6946 22 6 7.9271 -6.5906 2.7083 23 6 8.5552 -7.8151 2.4224 24 6 8.9849 -8.6714 3.4544 25 6 9.5878 -9.8468 3.1085 26 6 9.7633 -10.1693 1.7636 27 7 9.3625 -9.3703 0.8057 28 6 8.7643 -8.2050 1.0762 29 6 8.3334 -7.3582 0.0419 30 6 4.2726 -2.3144 -0.1692 31 1 -0.4850 0.8401 0.0004 32 1 3.2409 0.1615 -2.0311 33 1 4.3528 0.5751 -0.6916 34 1 4.2854 -1.1589 -3.8702 35 1 5.4954 -3.7216 -2.1318 36 1 7.0797 -2.9103 -2.1194 37 1 6.5334 -3.8371 0.4921 38 1 7.0391 -4.8436 1.9207 39 1 7.7664 -6.2926 3.7338 40 1 8.8416 -8.4058 4.4914 41 1 9.9292 -10.5255 3.8761 42 1 10.2421 -11.1021 1.5045 43 1 8.4809 -7.6412 -0.9898 44 1 3.8922 -3.2677 -0.5361 45 1 4.4556 -2.3741 0.9036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958503866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:58 Heat of formation + Delta-G solvation = 6.427448 kcal Electronic energy + Delta-G solvation = -28436.286071 eV Core-core repulsion = 24419.652442 eV Total energy + Delta-G solvation = -4016.633629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.25075 -39.85777 -38.65226 -37.02038 -35.16855 -34.78165 -33.85747 -32.36118 -31.32039 -30.37837 -30.11104 -28.14887 -26.31134 -24.87237 -24.24918 -23.25475 -22.38995 -21.36741 -20.81560 -19.84485 -18.66723 -17.88208 -17.55812 -17.23887 -16.62076 -16.19454 -15.74630 -15.57168 -15.29172 -14.85539 -14.68819 -14.54113 -14.30881 -14.15141 -13.92107 -13.78559 -13.49815 -13.44210 -13.01145 -12.67555 -12.32497 -12.22285 -11.99979 -11.96141 -11.85520 -11.38959 -11.13477 -10.94632 -10.86945 -10.68223 -10.47320 -10.25880 -10.01977 -9.88674 -9.56251 -9.43875 -9.24758 -9.00848 -8.70856 -8.65883 -7.08029 -5.98139 -3.28098 -0.10500 0.26511 1.52257 2.17375 3.01425 3.11951 3.26605 3.40978 3.43672 3.77265 3.89694 4.15801 4.29300 4.39484 4.45371 4.49129 4.49899 4.57915 4.74217 4.74885 4.83642 5.04473 5.06203 5.08933 5.11922 5.37385 5.40422 5.47502 5.50954 5.56358 5.65055 5.69309 5.77276 5.87744 5.94684 6.09104 6.10057 6.12099 6.32911 6.36373 6.40056 6.41620 6.55869 6.71149 7.42066 7.50360 7.64497 7.97871 8.12588 8.27758 8.79206 9.64474 10.12483 11.18107 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002222 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.740654 B =12595.404575 C =13458.321424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.884 3.116 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.092 0.908 9 N -0.601 5.601 10 C 0.082 3.918 11 C 0.099 3.901 12 H 0.064 0.936 13 O -0.550 6.550 14 C -0.109 4.109 15 H 0.091 0.909 16 C 0.140 3.860 17 N -0.720 5.720 18 C 0.556 3.444 19 O -0.533 6.533 20 C -0.113 4.113 21 C -0.089 4.089 22 C -0.099 4.099 23 C -0.088 4.088 24 C -0.060 4.060 25 C -0.170 4.170 26 C 0.129 3.871 27 N -0.466 5.466 28 C 0.116 3.884 29 C -0.024 4.024 30 C 0.143 3.857 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.377 0.623 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.161 0.839 43 H 0.151 0.849 44 H 0.039 0.961 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.592 -14.119 6.380 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.714 3.286 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.328 5.328 10 C -0.043 4.043 11 C 0.039 3.961 12 H 0.081 0.919 13 O -0.356 6.356 14 C -0.129 4.129 15 H 0.109 0.891 16 C 0.017 3.983 17 N -0.371 5.371 18 C 0.342 3.658 19 O -0.411 6.411 20 C -0.118 4.118 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.090 4.090 24 C -0.086 4.086 25 C -0.189 4.189 26 C -0.045 4.045 27 N -0.174 5.174 28 C -0.004 4.004 29 C -0.044 4.044 30 C 0.018 3.982 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.224 0.776 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.057 0.943 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 21.672 -14.873 5.020 26.759 hybrid contribution -0.007 1.945 1.253 2.314 sum 21.665 -12.927 6.273 25.997 Atomic orbital electron populations 1.69853 1.05522 1.26554 1.53184 1.24999 0.95164 0.97347 1.00300 0.86968 0.79173 0.84882 0.77563 1.21423 1.22973 1.20347 1.18638 0.84430 0.95439 1.38154 0.89064 1.44597 1.09939 1.21839 1.56410 1.22667 0.94562 0.92881 0.94221 1.22822 0.94805 0.92284 0.86225 0.91867 1.86463 1.84277 1.36973 1.27853 1.22560 0.97960 0.95463 0.96879 0.89127 1.21254 0.99026 0.89290 0.88776 1.45989 1.60193 1.20019 1.10942 1.18131 0.78081 0.81271 0.88321 1.90796 1.55979 1.74057 1.20259 1.19966 1.02252 0.96011 0.93599 1.21023 0.98305 1.00030 0.91421 1.20891 0.98071 0.92894 0.99959 1.18974 0.99803 0.96243 0.93989 1.21538 0.94628 0.93199 0.99267 1.21978 1.00732 0.98090 0.98147 1.23030 0.94638 0.98175 0.88632 1.68042 1.09434 1.03059 1.36828 1.18769 0.97734 0.92615 0.91327 1.21249 0.92599 0.90716 0.99788 1.21389 0.87358 0.93223 0.96231 0.92697 0.91838 0.95064 0.77583 0.89635 0.91395 0.76444 0.84805 0.84465 0.84076 0.84287 0.82149 0.83111 0.94272 0.95299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.82 13.97 55.49 0.78 -27.05 16 2 C 0.02 0.58 5.43 -17.43 -0.09 0.49 16 3 Si 0.88 22.01 24.27 -169.99 -4.13 17.89 16 4 H -0.29 -6.81 6.49 56.52 0.37 -6.45 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.28 -6.74 6.66 56.52 0.38 -6.36 16 7 C -0.24 -6.74 10.57 -15.06 -0.16 -6.90 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.60 -14.18 3.21 -170.08 -0.55 -14.73 16 10 C 0.08 1.70 4.43 -2.53 -0.01 1.68 16 11 C 0.10 1.58 4.16 -24.59 -0.10 1.48 16 12 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 13 O -0.55 -8.87 12.22 -35.23 -0.43 -9.30 16 14 C -0.11 -1.63 2.95 -88.79 -0.26 -1.89 16 15 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 16 C 0.14 1.99 4.59 -4.04 -0.02 1.97 16 17 N -0.72 -8.97 5.35 -61.23 -0.33 -9.30 16 18 C 0.56 7.75 7.77 -12.31 -0.10 7.66 16 19 O -0.53 -9.35 16.30 5.32 0.09 -9.26 16 20 C -0.11 -1.32 5.87 -105.00 -0.62 -1.94 16 21 C -0.09 -0.81 9.44 -39.57 -0.37 -1.18 16 22 C -0.10 -0.80 9.74 -39.58 -0.39 -1.18 16 23 C -0.09 -0.81 5.75 -106.73 -0.61 -1.42 16 24 C -0.06 -0.40 9.88 -39.21 -0.39 -0.79 16 25 C -0.17 -0.99 10.03 -39.75 -0.40 -1.39 16 26 C 0.13 0.97 11.15 -17.46 -0.19 0.78 16 27 N -0.47 -5.15 10.34 -10.98 -0.11 -5.26 16 28 C 0.12 1.32 6.60 -84.87 -0.56 0.76 16 29 C -0.02 -0.29 9.56 -38.68 -0.37 -0.66 16 30 C 0.14 2.71 6.52 -3.07 -0.02 2.69 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.06 1.40 6.63 -51.93 -0.34 1.06 16 33 H 0.03 0.66 5.57 -51.93 -0.29 0.37 16 34 H 0.38 4.65 9.12 45.56 0.42 5.06 16 35 H 0.09 1.45 7.44 -51.93 -0.39 1.07 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.40 4.01 6.31 -40.82 -0.26 3.75 16 38 H 0.13 0.92 6.34 -52.49 -0.33 0.59 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 40 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 42 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.15 1.95 7.60 -52.49 -0.40 1.55 16 44 H 0.04 0.79 7.77 -51.93 -0.40 0.38 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -36.75 368.28 -8.79 -45.54 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.00 Total: 5.76 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -4.66 Total: 0.15 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.21 Total: -56.33 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.34 Total: -18.56 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.13 Total: 17.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.75 -8.79 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958503866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.968 kcal (2) G-P(sol) polarization free energy of solvation -36.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds