Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00055 * 2 1 4 4 H 1.48496 * 109.47207 * 264.53780 * 3 2 1 5 5 H 1.48495 * 109.46917 * 24.54019 * 3 2 1 6 6 H 1.48502 * 109.46709 * 144.53664 * 3 2 1 7 7 C 1.38814 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00209 * 337.61630 * 7 2 1 9 9 N 1.36931 * 120.00300 * 157.61656 * 7 2 1 10 10 C 1.47427 * 125.64601 * 341.47281 * 9 7 2 11 11 C 1.54906 * 104.83202 * 204.16213 * 10 9 7 12 12 H 1.09012 * 111.00508 * 204.91371 * 11 10 9 13 13 O 1.42896 * 111.00359 * 81.06943 * 11 10 9 14 14 C 1.55150 * 101.58390 * 322.99055 * 11 10 9 15 15 H 1.09003 * 110.87257 * 277.06625 * 14 11 10 16 16 C 1.53003 * 110.72050 * 153.86449 * 14 11 10 17 17 N 1.46504 * 109.47223 * 180.02562 * 16 14 11 18 18 C 1.34770 * 119.99904 * 179.97438 * 17 16 14 19 19 O 1.21549 * 120.00394 * 359.97438 * 18 17 16 20 20 C 1.47887 * 119.99972 * 179.97438 * 18 17 16 21 21 C 1.40581 * 119.70527 * 0.02562 * 20 18 17 22 22 C 1.35807 * 120.73502 * 179.97438 * 21 20 18 23 23 C 1.40549 * 119.98536 * 359.97438 * 22 21 20 24 24 C 1.40817 * 121.13608 * 180.02562 * 23 22 21 25 25 C 1.36556 * 118.19926 * 179.97438 * 24 23 22 26 26 C 1.39417 * 119.93750 * 0.03726 * 25 24 23 27 27 N 1.31021 * 121.71449 * 359.97438 * 26 25 24 28 28 C 1.33750 * 121.34999 * 359.97438 * 27 26 25 29 29 C 1.38409 * 119.70811 * 179.72293 * 20 18 17 30 30 C 1.47019 * 125.65485 * 161.51275 * 9 7 2 31 31 H 0.97001 * 119.99732 * 359.97438 * 1 2 3 32 32 H 1.08996 * 110.36932 * 323.00224 * 10 9 7 33 33 H 1.09004 * 110.36648 * 85.21360 * 10 9 7 34 34 H 0.96706 * 114.00559 * 67.80271 * 13 11 10 35 35 H 1.09002 * 109.47091 * 300.02304 * 16 14 11 36 36 H 1.09002 * 109.47318 * 60.02587 * 16 14 11 37 37 H 0.97000 * 119.99489 * 0.02562 * 17 16 14 38 38 H 1.07995 * 119.62970 * 359.97438 * 21 20 18 39 39 H 1.07999 * 120.01030 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.90585 * 359.97438 * 24 23 22 41 41 H 1.07997 * 120.02996 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.14609 * 179.97438 * 26 25 24 43 43 H 1.07994 * 120.23151 * 0.02562 * 29 20 18 44 44 H 1.09005 * 109.88022 * 59.48540 * 30 9 7 45 45 H 1.08998 * 109.88259 * 298.32785 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6131 1.9798 -1.3937 5 1 1.3947 2.6831 0.5815 6 1 3.4853 1.4761 0.8123 7 6 2.0103 -1.2022 -0.0005 8 1 1.5313 -2.1025 0.3552 9 7 3.3022 -1.2467 -0.4521 10 6 3.9503 -0.2324 -1.3033 11 6 5.0948 -0.9899 -2.0214 12 1 5.8894 -0.3057 -2.3198 13 8 4.5998 -1.7183 -3.1468 14 6 5.5797 -1.9525 -0.9054 15 1 6.2743 -1.4489 -0.2330 16 6 6.2241 -3.2015 -1.5100 17 7 6.6707 -4.0901 -0.4342 18 6 7.2712 -5.2594 -0.7317 19 8 7.4419 -5.5770 -1.8925 20 6 7.7225 -6.1561 0.3542 21 6 7.5215 -5.7830 1.6946 22 6 7.9271 -6.5906 2.7083 23 6 8.5552 -7.8151 2.4224 24 6 8.9849 -8.6714 3.4544 25 6 9.5878 -9.8468 3.1085 26 6 9.7633 -10.1693 1.7636 27 7 9.3625 -9.3703 0.8057 28 6 8.7643 -8.2050 1.0762 29 6 8.3334 -7.3582 0.0419 30 6 4.2726 -2.3144 -0.1692 31 1 -0.4850 0.8401 0.0004 32 1 3.2409 0.1615 -2.0311 33 1 4.3528 0.5751 -0.6916 34 1 4.2854 -1.1589 -3.8702 35 1 5.4954 -3.7216 -2.1318 36 1 7.0797 -2.9103 -2.1194 37 1 6.5334 -3.8371 0.4921 38 1 7.0391 -4.8436 1.9207 39 1 7.7664 -6.2926 3.7338 40 1 8.8416 -8.4058 4.4914 41 1 9.9292 -10.5255 3.8761 42 1 10.2421 -11.1021 1.5045 43 1 8.4809 -7.6412 -0.9898 44 1 3.8922 -3.2677 -0.5361 45 1 4.4556 -2.3741 0.9036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958503866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -23.243560 kcal Electronic energy + Delta-G solvation = -28437.572703 eV Core-core repulsion = 24419.652442 eV Total energy + Delta-G solvation = -4017.920261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -41.95354 -40.92014 -39.99367 -37.76722 -36.46925 -36.22942 -34.48385 -34.18089 -32.45124 -31.34454 -31.05292 -29.65537 -27.73152 -26.02983 -24.88703 -24.55947 -23.12531 -22.81602 -21.95659 -21.18893 -19.61241 -19.17773 -18.59206 -18.10192 -17.85464 -17.37668 -17.10123 -16.73075 -16.47335 -16.04259 -15.63445 -15.50023 -15.38751 -15.23168 -15.04391 -14.90026 -14.58209 -14.50156 -14.25286 -13.92495 -13.80825 -13.49077 -13.20046 -12.96059 -12.81429 -12.73219 -12.54334 -12.32052 -12.20064 -12.10790 -11.85038 -11.57055 -11.50501 -11.13566 -10.98001 -10.67586 -10.50399 -10.23116 -9.82633 -9.34683 -9.03558 -8.17761 -5.44358 -0.79503 -0.37665 0.85218 1.29771 1.39666 1.43167 1.49345 1.99134 2.24365 2.41718 3.01189 3.07627 3.15835 3.27082 3.36547 3.51503 3.60899 3.71656 3.77270 3.83463 3.87247 3.95439 4.03922 4.06377 4.25631 4.33583 4.37796 4.55682 4.56973 4.67889 4.72576 4.77288 4.84992 4.87243 4.94531 4.99041 5.03613 5.08194 5.15458 5.26487 5.31198 5.35148 5.51183 5.66160 5.76598 6.09383 6.42396 6.74537 6.89887 6.91996 7.08595 7.53432 8.09143 9.02411 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019970 B = 0.002222 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.740654 B =12595.404575 C =13458.321424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.042 4.042 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.311 1.311 6 H -0.260 1.260 7 C -0.236 4.236 8 H 0.050 0.950 9 N -0.622 5.622 10 C 0.072 3.928 11 C 0.108 3.892 12 H 0.111 0.889 13 O -0.568 6.568 14 C -0.094 4.094 15 H 0.129 0.871 16 C 0.151 3.849 17 N -0.707 5.707 18 C 0.554 3.446 19 O -0.579 6.579 20 C -0.121 4.121 21 C -0.100 4.100 22 C -0.084 4.084 23 C -0.102 4.102 24 C -0.059 4.059 25 C -0.162 4.162 26 C 0.126 3.874 27 N -0.512 5.512 28 C 0.092 3.908 29 C -0.049 4.049 30 C 0.139 3.861 31 H 0.262 0.738 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.392 0.608 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.414 0.586 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.179 0.821 42 H 0.188 0.812 43 H 0.125 0.875 44 H 0.017 0.983 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.835 -13.541 8.976 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.236 4.236 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.240 1.240 6 H -0.185 1.185 7 C -0.364 4.364 8 H 0.068 0.932 9 N -0.348 5.348 10 C -0.053 4.053 11 C 0.047 3.953 12 H 0.128 0.872 13 O -0.376 6.376 14 C -0.113 4.113 15 H 0.146 0.854 16 C 0.027 3.973 17 N -0.359 5.359 18 C 0.342 3.658 19 O -0.460 6.460 20 C -0.126 4.126 21 C -0.118 4.118 22 C -0.103 4.103 23 C -0.104 4.104 24 C -0.084 4.084 25 C -0.182 4.182 26 C -0.046 4.046 27 N -0.221 5.221 28 C -0.027 4.027 29 C -0.069 4.069 30 C 0.014 3.986 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.242 0.758 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.252 0.748 38 H 0.175 0.825 39 H 0.193 0.807 40 H 0.196 0.804 41 H 0.196 0.804 42 H 0.205 0.795 43 H 0.143 0.857 44 H 0.035 0.965 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 24.958 -14.291 7.621 29.752 hybrid contribution -1.005 1.507 0.493 1.877 sum 23.953 -12.784 8.114 28.338 Atomic orbital electron populations 1.70004 1.07492 1.27337 1.55844 1.25721 0.95855 1.01178 1.00887 0.85834 0.77929 0.79378 0.78649 1.19307 1.23952 1.18511 1.18535 0.86612 0.94132 1.37154 0.93176 1.44689 1.09318 1.23692 1.57144 1.22881 0.95576 0.92979 0.93824 1.22911 0.93904 0.92519 0.85947 0.87184 1.86457 1.84481 1.38158 1.28506 1.22553 0.96296 0.95674 0.96743 0.85356 1.21005 0.98451 0.88898 0.88918 1.45840 1.59348 1.19363 1.11397 1.18535 0.77410 0.81567 0.88288 1.90763 1.57932 1.75066 1.22259 1.19838 1.03054 0.95452 0.94246 1.21223 0.99040 1.01359 0.90167 1.21325 0.95849 0.91712 1.01369 1.19297 1.00088 0.97373 0.93632 1.22009 0.93474 0.92681 1.00258 1.22416 0.99301 0.98367 0.98071 1.23680 0.93286 0.98359 0.89321 1.68016 1.11349 1.03904 1.38797 1.18863 0.98674 0.92972 0.92226 1.21160 0.94529 0.91971 0.99238 1.21526 0.88365 0.91023 0.97666 0.92909 0.93809 0.94105 0.75807 0.92905 0.90381 0.74766 0.82533 0.80685 0.80405 0.80376 0.79541 0.85685 0.96519 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.95 13.97 21.65 0.30 -60.64 16 2 C -0.04 -2.49 5.43 84.86 0.46 -2.02 16 3 Si 0.95 45.32 24.27 68.60 1.66 46.98 16 4 H -0.27 -11.73 6.49 99.48 0.65 -11.08 16 5 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 6 H -0.26 -11.51 6.66 99.48 0.66 -10.85 16 7 C -0.24 -13.61 10.57 84.03 0.89 -12.72 16 8 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 9 N -0.62 -29.00 3.21 -692.00 -2.22 -31.22 16 10 C 0.07 2.80 4.43 86.85 0.38 3.18 16 11 C 0.11 3.07 4.16 31.98 0.13 3.20 16 12 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 13 O -0.57 -17.42 12.22 -148.98 -1.82 -19.24 16 14 C -0.09 -2.51 2.95 -9.61 -0.03 -2.54 16 15 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 16 C 0.15 4.10 4.59 86.38 0.40 4.50 16 17 N -0.71 -16.94 5.35 -465.92 -2.49 -19.43 16 18 C 0.55 15.90 7.77 86.80 0.67 16.57 16 19 O -0.58 -21.54 16.30 -3.87 -0.06 -21.60 16 20 C -0.12 -2.91 5.87 -20.11 -0.12 -3.03 16 21 C -0.10 -1.63 9.44 22.28 0.21 -1.42 16 22 C -0.08 -1.11 9.74 22.27 0.22 -0.89 16 23 C -0.10 -1.68 5.75 -21.23 -0.12 -1.80 16 24 C -0.06 -0.55 9.88 22.51 0.22 -0.33 16 25 C -0.16 -1.31 10.03 22.16 0.22 -1.09 16 26 C 0.13 1.70 11.15 85.10 0.95 2.65 16 27 N -0.51 -11.54 10.34 -188.66 -1.95 -13.49 16 28 C 0.09 2.15 6.60 40.25 0.27 2.42 16 29 C -0.05 -1.30 9.56 22.85 0.22 -1.09 16 30 C 0.14 5.09 6.52 86.73 0.57 5.65 16 31 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 32 H 0.04 1.86 6.63 -2.39 -0.02 1.84 16 33 H 0.04 1.54 5.57 -2.39 -0.01 1.53 16 34 H 0.39 9.03 9.12 -74.05 -0.68 8.35 16 35 H 0.05 1.81 7.44 -2.39 -0.02 1.80 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.41 7.41 6.31 -92.71 -0.58 6.82 16 38 H 0.16 1.70 6.34 -2.91 -0.02 1.68 16 39 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 40 H 0.18 0.33 8.06 -2.91 -0.02 0.30 16 41 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 42 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.13 3.77 7.60 -2.91 -0.02 3.75 16 44 H 0.02 0.68 7.77 -2.38 -0.02 0.66 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -87.11 368.28 -1.35 -88.46 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.32 Total: 18.94 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 5.54 Total: 11.25 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -6.36 Total: -124.79 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.88 Total: -40.84 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.66 Total: 46.98 kcal Total: -87.11 -1.35 -88.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958503866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.217 kcal (2) G-P(sol) polarization free energy of solvation -87.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds