Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47212 * 269.99874 * 3 2 1 5 5 H 1.48503 * 109.47039 * 30.00072 * 3 2 1 6 6 H 1.48506 * 109.47190 * 149.99716 * 3 2 1 7 7 C 1.38817 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.47873 * 126.94538 * 0.02562 * 9 7 2 11 11 C 1.55481 * 105.17317 * 181.92363 * 10 9 7 12 12 H 1.08997 * 116.04115 * 159.75174 * 11 10 9 13 13 C 1.57437 * 99.68621 * 32.85113 * 11 10 9 14 14 C 1.49291 * 126.94478 * 179.97438 * 9 7 2 15 15 H 1.08996 * 116.14834 * 15.84229 * 14 9 7 16 16 C 1.56012 * 104.09113 * 246.69996 * 14 9 7 17 17 N 1.47875 * 105.10746 * 288.76618 * 16 14 9 18 18 C 1.34773 * 126.94583 * 181.98306 * 17 16 14 19 19 O 1.21280 * 120.00109 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00186 * 0.02562 * 18 17 16 21 21 C 1.50703 * 109.47407 * 180.02562 * 20 18 17 22 22 C 1.38299 * 119.81296 * 269.97936 * 21 20 18 23 23 C 1.38391 * 119.82706 * 180.02562 * 22 21 20 24 24 C 1.37668 * 119.91601 * 359.97438 * 23 22 21 25 25 C 1.38902 * 120.80530 * 0.02562 * 24 23 22 26 26 C 1.37939 * 119.81308 * 89.99901 * 21 20 18 27 27 N 1.39540 * 110.22949 * 180.02562 * 25 24 23 28 28 C 1.34370 * 112.24311 * 0.26548 * 27 25 24 29 29 O 1.21293 * 126.43794 * 179.73046 * 28 27 25 30 30 C 1.51141 * 132.85611 * 180.02562 * 24 23 22 31 31 H 0.96998 * 120.00380 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.31077 * 300.90279 * 10 9 7 33 33 H 1.08997 * 110.31407 * 62.98487 * 10 9 7 34 34 H 1.08998 * 112.53644 * 191.71098 * 13 11 10 35 35 H 1.09008 * 112.31184 * 64.17592 * 13 11 10 36 36 H 1.09005 * 110.31391 * 169.85856 * 16 14 9 37 37 H 1.09001 * 110.31712 * 47.67368 * 16 14 9 38 38 H 1.08997 * 109.47135 * 59.99723 * 20 18 17 39 39 H 1.09002 * 109.47446 * 300.00301 * 20 18 17 40 40 H 1.08004 * 120.08421 * 0.04405 * 22 21 20 41 41 H 1.08004 * 120.03942 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.92954 * 359.95857 * 26 21 20 43 43 H 0.97001 * 123.87437 * 179.97438 * 27 25 24 44 44 H 1.09001 * 110.50587 * 298.62528 * 30 24 23 45 45 H 1.09002 * 110.50498 * 61.32605 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3648 -4.1049 0.0504 12 1 -1.3443 -4.4354 0.3959 13 6 0.8835 -4.5248 0.9129 14 6 1.9103 -3.7618 0.0005 15 1 2.9645 -3.8351 0.2676 16 6 1.5084 -4.3457 -1.3892 17 7 0.0516 -4.5836 -1.3006 18 6 -0.7411 -5.1189 -2.2501 19 8 -1.9279 -5.2570 -2.0422 20 6 -0.1527 -5.5459 -3.5701 21 6 -1.2418 -6.1070 -4.4476 22 6 -1.5335 -7.4581 -4.4027 23 6 -2.5332 -7.9737 -5.2088 24 6 -3.2338 -7.1405 -6.0516 25 6 -2.9504 -5.7818 -6.1059 26 6 -1.9420 -5.2700 -5.2914 27 7 -3.7873 -5.1508 -7.0270 28 6 -4.6416 -6.0091 -7.6093 29 8 -5.4813 -5.7368 -8.4412 30 6 -4.3563 -7.3804 -7.0349 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5820 -2.0911 0.8761 33 1 -0.5733 -2.1522 -0.9117 34 1 1.0486 -5.6022 0.9119 35 1 0.8438 -4.1183 1.9236 36 1 2.0344 -5.2826 -1.5725 37 1 1.7271 -3.6272 -2.1792 38 1 0.6064 -6.3093 -3.3995 39 1 0.3016 -4.6852 -4.0609 40 1 -0.9826 -8.1091 -3.7399 41 1 -2.7641 -9.0283 -5.1762 42 1 -1.7085 -4.2160 -5.3205 43 1 -3.7587 -4.2009 -7.2213 44 1 -4.0373 -8.0679 -7.8183 45 1 -5.2372 -7.7665 -6.5220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032451697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 26.054975 kcal Electronic energy + Delta-G solvation = -29054.358802 eV Core-core repulsion = 25038.576286 eV Total energy + Delta-G solvation = -4015.782516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.60506 -40.15863 -38.88304 -37.77908 -35.96291 -33.67401 -33.04390 -31.70153 -30.35137 -29.80381 -29.02439 -28.57582 -26.23819 -25.23021 -23.48940 -22.95339 -21.77218 -21.27651 -20.25246 -19.88134 -18.48902 -17.89466 -17.26100 -16.84361 -16.35130 -16.21769 -15.99456 -15.53324 -15.34973 -14.80232 -14.50632 -14.26230 -13.98013 -13.96111 -13.39835 -13.28205 -13.26686 -12.91384 -12.65260 -12.23633 -12.11535 -12.00328 -11.85141 -11.66359 -11.35985 -11.15179 -11.04715 -10.93758 -10.90169 -10.82991 -10.63844 -10.44194 -10.30593 -10.12116 -9.68966 -9.54325 -8.88377 -8.73860 -8.18648 -8.04728 -6.98114 -5.81718 -3.16588 0.98000 1.15356 2.23335 2.78101 2.99787 3.29228 3.33364 3.38267 3.41040 3.68314 3.87574 4.17163 4.37233 4.60407 4.63023 4.82390 4.93456 5.07809 5.12724 5.13744 5.14900 5.21266 5.28313 5.33874 5.46469 5.51354 5.57972 5.62592 5.69224 5.74275 5.86631 5.92795 6.11963 6.17766 6.23910 6.31918 6.36326 6.44139 6.48154 6.54553 6.54880 6.64125 6.83723 7.37617 7.43483 7.67044 7.71320 8.03522 8.06945 8.55015 9.05083 9.66140 10.34857 11.30180 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.002563 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.117023 B =10920.339216 C =12100.589296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.113 0.887 13 C -0.150 4.150 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.082 3.918 17 N -0.607 5.607 18 C 0.529 3.471 19 O -0.547 6.547 20 C -0.100 4.100 21 C -0.022 4.022 22 C -0.122 4.122 23 C -0.066 4.066 24 C -0.148 4.148 25 C 0.139 3.861 26 C -0.119 4.119 27 N -0.658 5.658 28 C 0.528 3.472 29 O -0.511 6.511 30 C -0.113 4.113 31 H 0.254 0.746 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.414 0.586 44 H 0.122 0.878 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -17.124 -8.940 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.131 0.869 13 C -0.190 4.190 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.043 4.043 17 N -0.341 5.341 18 C 0.317 3.683 19 O -0.426 6.426 20 C -0.140 4.140 21 C -0.023 4.023 22 C -0.141 4.141 23 C -0.085 4.085 24 C -0.150 4.150 25 C 0.042 3.958 26 C -0.140 4.140 27 N -0.301 5.301 28 C 0.316 3.684 29 O -0.386 6.386 30 C -0.152 4.152 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.252 0.748 44 H 0.140 0.860 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.324 -16.874 -9.400 19.361 hybrid contribution 0.518 1.636 -0.113 1.719 sum -0.806 -15.238 -9.513 17.982 Atomic orbital electron populations 1.69916 1.04952 1.25349 1.56305 1.24826 0.95681 0.97741 1.01993 0.86123 0.78588 0.83457 0.77566 1.21617 1.21677 1.20614 1.19042 0.90397 0.82069 1.44555 0.90137 1.45255 1.01339 0.99304 1.86280 1.21825 0.84698 0.87353 1.01323 1.24289 0.97716 0.97554 0.80783 0.86936 1.24210 0.96697 0.98858 0.99199 1.23188 0.96545 0.86312 0.90824 0.87571 1.23320 0.79902 0.98889 1.02204 1.49224 1.09422 1.59895 1.15546 1.19903 0.86192 0.77697 0.84503 1.90697 1.15219 1.56352 1.80312 1.20678 0.97160 1.02901 0.93289 1.19024 0.95717 0.93210 0.94370 1.20901 0.98741 0.94684 0.99766 1.20160 0.94640 0.99212 0.94449 1.19738 1.00432 0.93223 1.01654 1.18014 0.93215 0.92069 0.92470 1.20207 0.96173 1.00199 0.97390 1.43738 1.34568 1.12280 1.39547 1.20628 0.79492 0.87988 0.80246 1.90814 1.33462 1.82472 1.31897 1.21024 0.98941 0.96367 0.98834 0.93567 0.92659 0.93543 0.91619 0.89832 0.92733 0.91063 0.87927 0.87916 0.85377 0.85334 0.85559 0.74843 0.86046 0.86054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.56 55.49 0.59 -25.64 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -5.99 10.38 -15.06 -0.16 -6.14 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -13.76 3.02 -156.65 -0.47 -14.24 16 10 C 0.17 4.01 4.75 -1.97 -0.01 4.00 16 11 C 0.10 1.83 5.22 -62.67 -0.33 1.50 16 12 H 0.11 2.06 8.05 -51.93 -0.42 1.64 16 13 C -0.15 -2.39 6.83 -22.07 -0.15 -2.54 16 14 C 0.14 2.42 5.53 -62.52 -0.35 2.08 16 15 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 16 C 0.08 1.26 6.01 -1.68 -0.01 1.25 16 17 N -0.61 -10.29 2.95 -156.91 -0.46 -10.76 16 18 C 0.53 8.74 7.89 -10.99 -0.09 8.65 16 19 O -0.55 -10.95 16.37 5.56 0.09 -10.85 16 20 C -0.10 -1.19 5.10 -29.04 -0.15 -1.34 16 21 C -0.02 -0.26 4.36 -104.71 -0.46 -0.72 16 22 C -0.12 -1.26 9.71 -39.50 -0.38 -1.65 16 23 C -0.07 -0.61 10.03 -39.73 -0.40 -1.01 16 24 C -0.15 -1.48 6.35 -104.37 -0.66 -2.15 16 25 C 0.14 1.58 7.11 -83.69 -0.60 0.98 16 26 C -0.12 -1.43 9.71 -39.27 -0.38 -1.81 16 27 N -0.66 -7.01 5.88 -9.70 -0.06 -7.07 16 28 C 0.53 6.03 8.71 -10.83 -0.09 5.94 16 29 O -0.51 -7.47 18.03 5.55 0.10 -7.37 16 30 C -0.11 -0.95 6.88 -28.48 -0.20 -1.15 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.06 1.43 7.46 -51.93 -0.39 1.04 16 33 H 0.05 1.25 7.67 -51.93 -0.40 0.85 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 40 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 43 H 0.41 3.78 8.96 -40.82 -0.37 3.41 16 44 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -33.85 373.37 -10.29 -44.14 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.18 Total: 4.30 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -4.50 Total: 5.65 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.41 Total: -57.70 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.19 Total: -18.22 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.85 -10.29 -44.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032451697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.198 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds