Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48500 * 109.47212 * 269.99874 * 3 2 1 5 5 H 1.48503 * 109.47039 * 30.00072 * 3 2 1 6 6 H 1.48506 * 109.47190 * 149.99716 * 3 2 1 7 7 C 1.38817 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.47873 * 126.94538 * 0.02562 * 9 7 2 11 11 C 1.55481 * 105.17317 * 181.92363 * 10 9 7 12 12 H 1.08997 * 116.04115 * 159.75174 * 11 10 9 13 13 C 1.57437 * 99.68621 * 32.85113 * 11 10 9 14 14 C 1.49291 * 126.94478 * 179.97438 * 9 7 2 15 15 H 1.08996 * 116.14834 * 15.84229 * 14 9 7 16 16 C 1.56012 * 104.09113 * 246.69996 * 14 9 7 17 17 N 1.47875 * 105.10746 * 288.76618 * 16 14 9 18 18 C 1.34773 * 126.94583 * 181.98306 * 17 16 14 19 19 O 1.21280 * 120.00109 * 180.02562 * 18 17 16 20 20 C 1.50696 * 120.00186 * 0.02562 * 18 17 16 21 21 C 1.50703 * 109.47407 * 180.02562 * 20 18 17 22 22 C 1.38299 * 119.81296 * 269.97936 * 21 20 18 23 23 C 1.38391 * 119.82706 * 180.02562 * 22 21 20 24 24 C 1.37668 * 119.91601 * 359.97438 * 23 22 21 25 25 C 1.38902 * 120.80530 * 0.02562 * 24 23 22 26 26 C 1.37939 * 119.81308 * 89.99901 * 21 20 18 27 27 N 1.39540 * 110.22949 * 180.02562 * 25 24 23 28 28 C 1.34370 * 112.24311 * 0.26548 * 27 25 24 29 29 O 1.21293 * 126.43794 * 179.73046 * 28 27 25 30 30 C 1.51141 * 132.85611 * 180.02562 * 24 23 22 31 31 H 0.96998 * 120.00380 * 0.02562 * 1 2 3 32 32 H 1.09007 * 110.31077 * 300.90279 * 10 9 7 33 33 H 1.08997 * 110.31407 * 62.98487 * 10 9 7 34 34 H 1.08998 * 112.53644 * 191.71098 * 13 11 10 35 35 H 1.09008 * 112.31184 * 64.17592 * 13 11 10 36 36 H 1.09005 * 110.31391 * 169.85856 * 16 14 9 37 37 H 1.09001 * 110.31712 * 47.67368 * 16 14 9 38 38 H 1.08997 * 109.47135 * 59.99723 * 20 18 17 39 39 H 1.09002 * 109.47446 * 300.00301 * 20 18 17 40 40 H 1.08004 * 120.08421 * 0.04405 * 22 21 20 41 41 H 1.08004 * 120.03942 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.92954 * 359.95857 * 26 21 20 43 43 H 0.97001 * 123.87437 * 179.97438 * 27 25 24 44 44 H 1.09001 * 110.50587 * 298.62528 * 30 24 23 45 45 H 1.09002 * 110.50498 * 61.32605 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1422 -2.5669 -0.0005 11 6 -0.3648 -4.1049 0.0504 12 1 -1.3443 -4.4354 0.3959 13 6 0.8835 -4.5248 0.9129 14 6 1.9103 -3.7618 0.0005 15 1 2.9645 -3.8351 0.2676 16 6 1.5084 -4.3457 -1.3892 17 7 0.0516 -4.5836 -1.3006 18 6 -0.7411 -5.1189 -2.2501 19 8 -1.9279 -5.2570 -2.0422 20 6 -0.1527 -5.5459 -3.5701 21 6 -1.2418 -6.1070 -4.4476 22 6 -1.5335 -7.4581 -4.4027 23 6 -2.5332 -7.9737 -5.2088 24 6 -3.2338 -7.1405 -6.0516 25 6 -2.9504 -5.7818 -6.1059 26 6 -1.9420 -5.2700 -5.2914 27 7 -3.7873 -5.1508 -7.0270 28 6 -4.6416 -6.0091 -7.6093 29 8 -5.4813 -5.7368 -8.4412 30 6 -4.3563 -7.3804 -7.0349 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5820 -2.0911 0.8761 33 1 -0.5733 -2.1522 -0.9117 34 1 1.0486 -5.6022 0.9119 35 1 0.8438 -4.1183 1.9236 36 1 2.0344 -5.2826 -1.5725 37 1 1.7271 -3.6272 -2.1792 38 1 0.6064 -6.3093 -3.3995 39 1 0.3016 -4.6852 -4.0609 40 1 -0.9826 -8.1091 -3.7399 41 1 -2.7641 -9.0283 -5.1762 42 1 -1.7085 -4.2160 -5.3205 43 1 -3.7587 -4.2009 -7.2213 44 1 -4.0373 -8.0679 -7.8183 45 1 -5.2372 -7.7665 -6.5220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032451697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = 4.065673 kcal Electronic energy + Delta-G solvation = -29055.312330 eV Core-core repulsion = 25038.576286 eV Total energy + Delta-G solvation = -4016.736044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.43333 -41.54584 -39.93205 -39.01993 -36.89591 -35.42579 -33.93658 -33.25471 -31.47123 -30.59462 -30.44194 -30.16879 -27.17354 -26.94121 -25.07179 -23.75749 -22.72255 -22.35423 -21.43025 -21.32773 -19.95168 -18.87643 -18.69922 -17.90962 -17.66211 -17.35863 -17.06047 -16.63077 -16.53231 -16.15173 -15.76035 -15.61581 -15.17259 -14.89812 -14.78812 -14.54666 -14.15541 -13.88388 -13.65287 -13.55672 -13.38342 -13.27662 -13.06678 -12.99288 -12.83735 -12.71448 -12.65781 -12.29082 -12.12899 -12.04152 -11.91665 -11.83343 -11.78795 -11.50951 -11.35727 -10.92602 -10.68658 -9.68784 -9.47188 -9.01701 -8.89084 -7.84053 -5.19427 0.16558 0.34095 1.38307 1.46711 1.47593 1.56339 1.72246 1.95304 2.10397 2.48781 2.80281 3.10425 3.34376 3.41745 3.43046 3.69728 3.75178 3.87709 3.95168 3.97027 4.09120 4.17345 4.26011 4.34083 4.48578 4.50141 4.53773 4.61922 4.67503 4.75831 4.86835 4.88332 4.97868 4.99712 5.06779 5.12502 5.18805 5.29538 5.41092 5.47276 5.52284 5.56967 5.66744 5.67334 5.72196 6.04870 6.11090 6.75400 6.85588 7.03737 7.25550 7.72438 8.42769 9.26847 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.002563 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.117023 B =10920.339216 C =12100.589296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.291 1.291 5 H -0.304 1.304 6 H -0.261 1.261 7 C -0.226 4.226 8 H 0.097 0.903 9 N -0.618 5.618 10 C 0.187 3.813 11 C 0.101 3.899 12 H 0.109 0.891 13 C -0.127 4.127 14 C 0.133 3.867 15 H 0.136 0.864 16 C 0.090 3.910 17 N -0.611 5.611 18 C 0.523 3.477 19 O -0.589 6.589 20 C -0.088 4.088 21 C -0.041 4.041 22 C -0.123 4.123 23 C -0.062 4.062 24 C -0.146 4.146 25 C 0.118 3.882 26 C -0.138 4.138 27 N -0.658 5.658 28 C 0.521 3.479 29 O -0.552 6.552 30 C -0.103 4.103 31 H 0.242 0.758 32 H 0.013 0.987 33 H -0.006 1.006 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.141 0.859 39 H 0.107 0.893 40 H 0.151 0.849 41 H 0.164 0.836 42 H 0.116 0.884 43 H 0.415 0.585 44 H 0.150 0.850 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -20.891 -9.129 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.218 1.218 5 H -0.231 1.231 6 H -0.186 1.186 7 C -0.355 4.355 8 H 0.115 0.885 9 N -0.342 5.342 10 C 0.060 3.940 11 C -0.003 4.003 12 H 0.127 0.873 13 C -0.166 4.166 14 C 0.027 3.973 15 H 0.153 0.847 16 C -0.034 4.034 17 N -0.344 5.344 18 C 0.314 3.686 19 O -0.470 6.470 20 C -0.128 4.128 21 C -0.042 4.042 22 C -0.142 4.142 23 C -0.080 4.080 24 C -0.149 4.149 25 C 0.022 3.978 26 C -0.159 4.159 27 N -0.300 5.300 28 C 0.311 3.689 29 O -0.430 6.430 30 C -0.141 4.141 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.012 0.988 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.072 0.928 38 H 0.159 0.841 39 H 0.125 0.875 40 H 0.169 0.831 41 H 0.181 0.819 42 H 0.134 0.866 43 H 0.253 0.747 44 H 0.168 0.832 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.291 -20.689 -9.580 22.836 hybrid contribution -0.254 2.769 -0.040 2.781 sum 1.037 -17.920 -9.620 20.365 Atomic orbital electron populations 1.70169 1.06619 1.24985 1.58997 1.25653 0.96355 1.01177 1.03403 0.85119 0.77868 0.79413 0.77194 1.21791 1.23138 1.18564 1.19548 0.91295 0.83134 1.41536 0.88521 1.45523 1.01411 1.01229 1.86080 1.21409 0.85056 0.90601 0.96888 1.24053 0.99171 0.93882 0.83164 0.87324 1.24104 0.93713 1.00954 0.97836 1.23650 0.98196 0.83034 0.92452 0.84653 1.23244 0.79088 1.00999 1.00025 1.49318 1.10344 1.59738 1.14999 1.20767 0.85667 0.76686 0.85499 1.90674 1.17138 1.58011 1.81158 1.20675 0.97756 1.04120 0.90219 1.19157 0.96244 0.94139 0.94704 1.21247 0.98893 0.94182 0.99841 1.20555 0.93553 1.00778 0.93148 1.20050 1.00553 0.92572 1.01726 1.18171 0.93585 0.93092 0.92960 1.20302 0.97096 1.00085 0.98434 1.43819 1.34358 1.12591 1.39279 1.21164 0.78761 0.89304 0.79641 1.90789 1.35133 1.83309 1.33795 1.21088 0.99100 0.94773 0.99135 0.94893 0.96910 0.98770 0.87520 0.90607 0.87185 0.92768 0.84119 0.87505 0.83092 0.81868 0.86583 0.74702 0.83233 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.05 10.56 21.65 0.23 -57.82 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 3 Si 0.97 44.68 29.55 68.60 2.03 46.71 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.23 -11.66 10.38 84.03 0.87 -10.79 16 8 H 0.10 4.56 7.83 -2.91 -0.02 4.54 16 9 N -0.62 -28.54 3.02 -649.51 -1.96 -30.50 16 10 C 0.19 9.11 4.75 86.97 0.41 9.52 16 11 C 0.10 3.72 5.22 46.88 0.24 3.96 16 12 H 0.11 4.07 8.05 -2.39 -0.02 4.05 16 13 C -0.13 -3.68 6.83 33.62 0.23 -3.45 16 14 C 0.13 4.19 5.53 46.95 0.26 4.45 16 15 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 16 C 0.09 2.47 6.01 87.16 0.52 2.99 16 17 N -0.61 -19.75 2.95 -768.75 -2.27 -22.01 16 18 C 0.52 16.65 7.89 87.66 0.69 17.34 16 19 O -0.59 -23.57 16.37 -3.03 -0.05 -23.62 16 20 C -0.09 -1.89 5.10 29.10 0.15 -1.74 16 21 C -0.04 -0.91 4.36 -19.92 -0.09 -1.00 16 22 C -0.12 -2.14 9.71 22.32 0.22 -1.93 16 23 C -0.06 -0.93 10.03 22.17 0.22 -0.71 16 24 C -0.15 -2.61 6.35 -19.70 -0.13 -2.73 16 25 C 0.12 2.64 7.11 38.34 0.27 2.91 16 26 C -0.14 -3.34 9.71 22.47 0.22 -3.12 16 27 N -0.66 -14.28 5.88 -303.21 -1.78 -16.07 16 28 C 0.52 11.73 8.71 87.94 0.77 12.50 16 29 O -0.55 -16.36 18.03 -3.07 -0.06 -16.41 16 30 C -0.10 -1.49 6.88 29.46 0.20 -1.28 16 31 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.01 0.71 7.46 -2.38 -0.02 0.70 16 33 H -0.01 -0.34 7.67 -2.39 -0.02 -0.36 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 36 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.14 1.89 8.08 -2.39 -0.02 1.88 16 39 H 0.11 2.20 8.08 -2.39 -0.02 2.18 16 40 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.41 8.15 8.96 -92.71 -0.83 7.32 16 44 H 0.15 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -80.21 373.37 1.87 -78.34 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.20 Total: 18.07 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 5.54 Total: 23.32 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -5.78 Total: -126.40 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -0.10 Total: -40.03 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -80.21 1.87 -78.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032451697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.409 kcal (2) G-P(sol) polarization free energy of solvation -80.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds