Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00499 * 2 1 4 4 H 1.48494 * 109.47155 * 240.00258 * 3 2 1 5 5 H 1.48510 * 109.46942 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47385 * 119.99772 * 3 2 1 7 7 C 1.38819 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99832 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.47870 * 126.94760 * 359.97438 * 9 7 2 11 11 C 1.58428 * 104.83442 * 182.30217 * 10 9 7 12 12 H 1.09006 * 116.62648 * 159.51472 * 11 10 9 13 13 C 1.57437 * 99.62099 * 32.32947 * 11 10 9 14 14 C 1.49292 * 126.94536 * 180.02562 * 9 7 2 15 15 H 1.08999 * 116.14860 * 15.83855 * 14 9 7 16 16 C 1.56016 * 104.09269 * 246.69804 * 14 9 7 17 17 N 1.47868 * 105.10367 * 287.92041 * 16 14 9 18 18 C 1.34780 * 126.94323 * 181.98096 * 17 16 14 19 19 O 1.21591 * 120.00131 * 184.69979 * 18 17 16 20 20 C 1.47593 * 120.00311 * 4.69698 * 18 17 16 21 21 C 1.39775 * 120.08216 * 352.11590 * 20 18 17 22 22 C 1.37639 * 119.94150 * 179.97438 * 21 20 18 23 23 C 1.39164 * 120.09482 * 0.03842 * 22 21 20 24 24 C 1.39145 * 120.09155 * 359.97438 * 23 22 21 25 25 C 1.37658 * 120.11628 * 359.97438 * 24 23 22 26 26 C 1.50691 * 119.82068 * 180.02562 * 24 23 22 27 27 C 1.52912 * 109.49153 * 326.07206 * 26 24 23 28 28 C 1.50494 * 109.87087 * 48.52661 * 27 26 24 29 29 O 1.21281 * 119.59907 * 144.83002 * 28 27 26 30 30 N 1.34523 * 120.80813 * 324.83882 * 28 27 26 31 31 H 0.97004 * 120.00070 * 359.97438 * 1 2 3 32 32 H 1.09002 * 110.32021 * 300.91251 * 10 9 7 33 33 H 1.09004 * 110.31521 * 62.99299 * 10 9 7 34 34 H 1.09000 * 112.53183 * 192.40480 * 13 11 10 35 35 H 1.08997 * 112.31858 * 64.87062 * 13 11 10 36 36 H 1.08996 * 110.32069 * 169.01363 * 16 14 9 37 37 H 1.09011 * 110.31847 * 46.82368 * 16 14 9 38 38 H 1.08004 * 120.02494 * 0.05361 * 21 20 18 39 39 H 1.07997 * 119.95222 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.04046 * 179.97438 * 25 24 23 41 41 H 1.09001 * 109.46767 * 86.07803 * 26 24 23 42 42 H 1.09003 * 109.47011 * 206.06473 * 26 24 23 43 43 H 1.09002 * 109.40357 * 168.64628 * 27 26 24 44 44 H 1.08991 * 109.40730 * 288.48914 * 27 26 24 45 45 H 0.96996 * 119.72784 * 181.02373 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1039 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1424 -2.5668 0.0005 11 6 -0.3601 -4.1349 0.0615 12 1 -1.3327 -4.4798 0.4124 13 6 0.8996 -4.5424 0.9135 14 6 1.9100 -3.7618 -0.0005 15 1 2.9642 -3.8352 0.2665 16 6 1.5079 -4.3457 -1.3903 17 7 0.0549 -4.6029 -1.2944 18 6 -0.7360 -5.1450 -2.2416 19 8 -1.9359 -5.2219 -2.0608 20 6 -0.1457 -5.6453 -3.4984 21 6 1.2031 -5.4113 -3.7808 22 6 1.7508 -5.8797 -4.9535 23 6 0.9633 -6.5851 -5.8585 24 6 -0.3797 -6.8193 -5.5802 25 6 -0.9336 -6.3546 -4.4088 26 6 -1.2266 -7.5843 -6.5643 27 6 -0.7640 -7.2705 -7.9876 28 6 0.7322 -7.4033 -8.0802 29 8 1.2341 -7.8263 -9.1001 30 7 1.5198 -7.0589 -7.0455 31 1 -0.4850 0.8401 0.0004 32 1 -0.5810 -2.0917 0.8781 33 1 -0.5749 -2.1513 -0.9097 34 1 1.0787 -5.6176 0.9062 35 1 0.8618 -4.1411 1.9262 36 1 2.0449 -5.2750 -1.5802 37 1 1.7127 -3.6214 -2.1788 38 1 1.8153 -4.8646 -3.0788 39 1 2.7930 -5.6994 -5.1716 40 1 -1.9763 -6.5368 -4.1942 41 1 -1.1253 -8.6533 -6.3767 42 1 -2.2705 -7.2927 -6.4489 43 1 -1.2331 -7.9670 -8.6826 44 1 -1.0525 -6.2517 -8.2458 45 1 2.4831 -7.1368 -7.1275 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032509337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = 32.658386 kcal Electronic energy + Delta-G solvation = -29591.862803 eV Core-core repulsion = 25576.366632 eV Total energy + Delta-G solvation = -4015.496171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.31989 -40.27375 -38.85107 -37.64206 -35.42460 -34.37439 -33.70047 -31.76741 -30.40321 -30.01954 -28.73624 -28.57643 -25.53627 -24.85739 -24.43382 -23.09210 -22.94990 -20.84282 -20.15670 -19.44469 -18.96563 -18.04549 -17.34275 -17.24088 -16.41466 -16.28923 -15.78530 -15.33632 -14.99538 -14.66166 -14.60943 -14.24287 -13.97642 -13.94190 -13.62133 -13.54957 -13.32663 -13.10888 -12.80313 -12.24863 -12.07134 -11.86042 -11.80026 -11.70115 -11.40665 -11.20835 -11.07373 -10.92148 -10.82763 -10.66919 -10.61586 -10.38227 -10.20833 -10.11482 -9.70012 -9.59343 -9.06842 -8.75466 -8.32011 -8.02665 -6.98971 -5.82260 -3.17387 0.65156 1.14444 2.12290 2.69569 3.02231 3.28126 3.33974 3.38290 3.40609 3.83554 4.01901 4.31399 4.36719 4.39871 4.59433 4.70860 4.79597 4.92119 5.03396 5.07533 5.13518 5.22892 5.30274 5.37602 5.44559 5.48813 5.52288 5.61576 5.64147 5.75260 5.76847 5.88432 5.94072 6.05116 6.19798 6.25366 6.32080 6.36101 6.41683 6.50470 6.55099 6.63213 6.85794 7.36411 7.43602 7.62195 7.66918 7.99086 8.04589 8.50796 9.04339 9.65255 10.33840 11.29561 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.002812 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.448048 B = 9956.611891 C =10701.696710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.235 4.235 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.176 3.824 11 C 0.096 3.904 12 H 0.116 0.884 13 C -0.151 4.151 14 C 0.140 3.860 15 H 0.107 0.893 16 C 0.073 3.927 17 N -0.599 5.599 18 C 0.571 3.429 19 O -0.553 6.553 20 C -0.141 4.141 21 C -0.085 4.085 22 C -0.159 4.159 23 C 0.174 3.826 24 C -0.138 4.138 25 C -0.026 4.026 26 C -0.075 4.075 27 C -0.139 4.139 28 C 0.522 3.478 29 O -0.531 6.531 30 N -0.661 5.661 31 H 0.255 0.745 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.168 0.832 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.638 -15.486 -8.710 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.051 3.949 11 C -0.006 4.006 12 H 0.134 0.866 13 C -0.191 4.191 14 C 0.031 3.969 15 H 0.125 0.875 16 C -0.052 4.052 17 N -0.331 5.331 18 C 0.361 3.639 19 O -0.433 6.433 20 C -0.145 4.145 21 C -0.103 4.103 22 C -0.179 4.179 23 C 0.078 3.922 24 C -0.141 4.141 25 C -0.045 4.045 26 C -0.112 4.112 27 C -0.179 4.179 28 C 0.311 3.689 29 O -0.407 6.407 30 N -0.305 5.305 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.185 0.815 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.964 -15.495 -9.313 18.104 hybrid contribution 0.944 1.041 -0.125 1.411 sum 1.908 -14.455 -9.439 17.369 Atomic orbital electron populations 1.69890 1.04962 1.25560 1.56033 1.24828 0.95685 0.97767 1.01849 0.86191 0.78456 0.83112 0.77898 1.21129 1.21608 1.21081 1.18989 0.90372 0.81996 1.44923 0.90141 1.45211 1.01415 0.99215 1.86219 1.22391 0.84563 0.86610 1.01382 1.24928 0.97692 0.97803 0.80170 0.86646 1.24187 0.96639 0.98950 0.99303 1.23199 0.96709 0.86358 0.90682 0.87539 1.23712 0.80610 0.98697 1.02217 1.49065 1.09481 1.59139 1.15436 1.17739 0.85741 0.77860 0.82599 1.90744 1.14151 1.58789 1.79631 1.19952 0.94484 1.03607 0.96445 1.22643 0.94918 0.96049 0.96733 1.20768 1.00380 1.01575 0.95219 1.17834 0.92702 0.95286 0.86412 1.19383 0.92789 1.04436 0.97499 1.20924 1.00090 0.92909 0.90613 1.20417 0.99844 1.00225 0.90694 1.21717 0.90960 1.05844 0.99341 1.20822 0.90487 0.75582 0.81993 1.90779 1.76448 1.44143 1.29291 1.43557 1.10916 1.63367 1.12634 0.93435 0.92601 0.93229 0.91452 0.89675 0.91884 0.90118 0.81504 0.84906 0.84101 0.89873 0.88711 0.87209 0.87633 0.75061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.08 10.56 55.49 0.59 -25.49 16 2 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 3 Si 0.91 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.24 -5.99 10.38 -15.06 -0.16 -6.15 16 8 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.60 -13.60 3.02 -154.80 -0.47 -14.07 16 10 C 0.18 4.05 4.89 -0.29 0.00 4.05 16 11 C 0.10 1.77 5.34 -60.95 -0.33 1.44 16 12 H 0.12 2.06 8.07 -51.93 -0.42 1.64 16 13 C -0.15 -2.37 6.85 -22.13 -0.15 -2.52 16 14 C 0.14 2.38 5.47 -62.59 -0.34 2.04 16 15 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 16 C 0.07 1.11 4.22 -1.68 -0.01 1.11 16 17 N -0.60 -10.43 2.95 -156.84 -0.46 -10.89 16 18 C 0.57 10.15 7.84 -12.44 -0.10 10.06 16 19 O -0.55 -11.41 16.73 5.29 0.09 -11.32 16 20 C -0.14 -2.02 5.88 -104.95 -0.62 -2.63 16 21 C -0.09 -1.04 8.72 -39.23 -0.34 -1.38 16 22 C -0.16 -1.61 9.89 -39.46 -0.39 -2.00 16 23 C 0.17 1.76 6.51 -83.74 -0.55 1.21 16 24 C -0.14 -1.42 5.65 -104.50 -0.59 -2.01 16 25 C -0.03 -0.32 9.22 -39.23 -0.36 -0.68 16 26 C -0.07 -0.56 6.00 -27.93 -0.17 -0.72 16 27 C -0.14 -1.05 6.08 -28.03 -0.17 -1.22 16 28 C 0.52 5.41 7.71 -11.20 -0.09 5.32 16 29 O -0.53 -7.26 17.91 5.56 0.10 -7.16 16 30 N -0.66 -6.08 5.34 -9.98 -0.05 -6.14 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.43 7.46 -51.93 -0.39 1.04 16 33 H 0.05 1.33 7.67 -51.93 -0.40 0.93 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 0.76 6.78 -51.93 -0.35 0.41 16 37 H 0.08 1.35 6.93 -51.92 -0.36 0.99 16 38 H 0.17 2.00 2.86 -53.32 -0.15 1.85 16 39 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 1.69 7.66 -52.49 -0.40 1.29 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 43 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.41 3.13 8.82 -40.82 -0.36 2.77 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -33.15 360.89 -10.00 -43.15 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.76 Total: 4.68 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -4.45 Total: 5.70 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.40 Total: -56.59 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.19 Total: -18.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.15 -10.00 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032509337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.807 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds