Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47166 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47240 * 299.99955 * 3 2 1 6 6 H 1.48503 * 109.47207 * 60.00147 * 3 2 1 7 7 C 1.38813 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99616 * 196.91980 * 7 2 1 9 9 N 1.36934 * 120.00013 * 16.91941 * 7 2 1 10 10 C 1.47154 * 120.97812 * 206.24574 * 9 7 2 11 11 C 1.53300 * 108.38109 * 230.50945 * 10 9 7 12 12 O 1.42955 * 109.26731 * 307.72348 * 11 10 9 13 13 C 1.42967 * 114.17117 * 62.49651 * 12 11 10 14 14 H 1.09004 * 109.51130 * 57.45268 * 13 12 11 15 15 C 1.52993 * 109.51683 * 177.55498 * 13 12 11 16 16 N 1.46500 * 109.46914 * 299.89883 * 15 13 12 17 17 C 1.34781 * 119.99969 * 179.97438 * 16 15 13 18 18 O 1.21564 * 120.00011 * 359.97438 * 17 16 15 19 19 C 1.47768 * 120.00089 * 180.02562 * 17 16 15 20 20 C 1.40628 * 119.80344 * 359.97438 * 19 17 16 21 21 C 1.35701 * 120.92440 * 180.02562 * 20 19 17 22 22 C 1.40762 * 120.10948 * 0.02562 * 21 20 19 23 23 N 1.33655 * 120.83398 * 179.97438 * 22 21 20 24 24 C 1.31114 * 121.39379 * 180.02562 * 23 22 21 25 25 C 1.39317 * 121.77392 * 359.97438 * 24 23 22 26 26 C 1.36582 * 119.89837 * 0.02562 * 25 24 23 27 27 C 1.40896 * 118.16490 * 359.74967 * 26 25 24 28 28 C 1.38546 * 119.80687 * 179.97438 * 19 17 16 29 29 C 1.47147 * 120.98406 * 26.21944 * 9 7 2 30 30 H 0.97007 * 119.99880 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.68636 * 350.23105 * 10 9 7 32 32 H 1.08995 * 109.68280 * 110.75514 * 10 9 7 33 33 H 1.09006 * 109.51066 * 67.62309 * 11 10 9 34 34 H 1.08994 * 109.51098 * 187.77435 * 11 10 9 35 35 H 1.08996 * 109.47618 * 179.90300 * 15 13 12 36 36 H 1.09007 * 109.47079 * 59.89625 * 15 13 12 37 37 H 0.96999 * 120.00354 * 0.02562 * 16 15 13 38 38 H 1.08004 * 119.54153 * 359.97438 * 20 19 17 39 39 H 1.07998 * 119.95127 * 180.02562 * 21 20 19 40 40 H 1.07993 * 119.11692 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.05216 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.91754 * 180.02562 * 26 25 24 43 43 H 1.07999 * 120.29526 * 0.02562 * 28 19 17 44 44 H 1.09001 * 109.68004 * 9.76027 * 29 9 7 45 45 H 1.08998 * 109.71362 * 249.23135 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0552 -1.2225 0.2717 9 7 1.3700 -2.3622 -0.3462 10 6 1.8340 -3.6634 0.1608 11 6 1.9812 -4.6206 -1.0276 12 8 0.7656 -4.6292 -1.7797 13 6 0.4243 -3.3658 -2.3553 14 1 1.2371 -3.0270 -2.9978 15 6 -0.8547 -3.5097 -3.1824 16 7 -0.6375 -4.4878 -4.2513 17 6 -1.6339 -4.7790 -5.1109 18 8 -2.7130 -4.2305 -4.9990 19 6 -1.4151 -5.7660 -6.1887 20 6 -0.1654 -6.3985 -6.3140 21 6 0.0606 -7.3079 -7.2955 22 6 -0.9615 -7.6311 -8.2077 23 7 -0.7546 -8.5243 -9.1803 24 6 -1.6986 -8.8332 -10.0361 25 6 -2.9622 -8.2495 -9.9768 26 6 -3.2419 -7.3284 -9.0078 27 6 -2.2265 -7.0026 -8.0870 28 6 -2.4423 -6.0627 -7.0697 29 6 0.1974 -2.3444 -1.2350 30 1 -0.4850 0.8401 -0.0004 31 1 2.7974 -3.5422 0.6560 32 1 1.1061 -4.0631 0.8667 33 1 2.8003 -4.2868 -1.6647 34 1 2.1900 -5.6258 -0.6616 35 1 -1.1152 -2.5458 -3.6195 36 1 -1.6670 -3.8486 -2.5394 37 1 0.2231 -4.9264 -4.3400 38 1 0.6259 -6.1565 -5.6199 39 1 1.0263 -7.7845 -7.3770 40 1 -1.4915 -9.5602 -10.8073 41 1 -3.7195 -8.5248 -10.6959 42 1 -4.2160 -6.8660 -8.9463 43 1 -3.4014 -5.5757 -6.9723 44 1 0.0770 -1.3496 -1.6639 45 1 -0.6960 -2.6112 -0.6704 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035493325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = -19.411997 kcal Electronic energy + Delta-G solvation = -28387.548728 eV Core-core repulsion = 24369.794617 eV Total energy + Delta-G solvation = -4017.754112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.95163 -40.86781 -39.98644 -37.74711 -36.50612 -35.93034 -34.50907 -33.27933 -32.81402 -31.51588 -31.10406 -29.10336 -27.52102 -25.59372 -25.00908 -24.85889 -23.44023 -22.99447 -22.13649 -21.39071 -19.47960 -19.00640 -18.77583 -17.95138 -17.50984 -17.15264 -16.90106 -16.74694 -16.16690 -16.06529 -15.57750 -15.51510 -15.42845 -15.30541 -15.06734 -14.94912 -14.59897 -14.51117 -14.40714 -13.98422 -13.82828 -13.19584 -13.10987 -13.02586 -12.71773 -12.68642 -12.51805 -12.46575 -12.18476 -12.07155 -11.88570 -11.61068 -11.35069 -11.16915 -10.80637 -10.56384 -10.52276 -10.26737 -9.83593 -9.35181 -8.76458 -7.92230 -5.39585 -0.82501 -0.35641 0.85823 1.37657 1.45113 1.47338 1.57673 1.99318 2.25926 2.47076 2.77448 3.07249 3.22362 3.26514 3.47620 3.54250 3.59885 3.72584 3.95118 3.99549 4.02539 4.04106 4.06207 4.25892 4.29604 4.44971 4.51096 4.51656 4.59290 4.66714 4.75692 4.81341 4.87386 4.94864 4.97450 5.01817 5.06912 5.17364 5.22631 5.25322 5.28289 5.48707 5.52279 5.59790 5.74471 6.25410 6.31789 6.43936 6.87615 7.04595 7.08564 7.73629 8.27126 9.13722 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.002078 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.721163 B =13470.959728 C =13991.912204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.264 4.264 8 H 0.075 0.925 9 N -0.614 5.614 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.389 6.389 13 C 0.076 3.924 14 H 0.067 0.933 15 C 0.143 3.857 16 N -0.701 5.701 17 C 0.555 3.445 18 O -0.580 6.580 19 C -0.146 4.146 20 C -0.072 4.072 21 C -0.102 4.102 22 C 0.124 3.876 23 N -0.508 5.508 24 C 0.140 3.860 25 C -0.171 4.171 26 C -0.053 4.053 27 C -0.130 4.130 28 C -0.027 4.027 29 C 0.159 3.841 30 H 0.251 0.749 31 H 0.073 0.927 32 H 0.015 0.985 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.415 0.585 38 H 0.154 0.846 39 H 0.156 0.844 40 H 0.193 0.807 41 H 0.177 0.823 42 H 0.165 0.835 43 H 0.144 0.856 44 H 0.067 0.933 45 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -18.888 -20.874 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.020 4.020 12 O -0.309 6.309 13 C 0.016 3.984 14 H 0.085 0.915 15 C 0.018 3.982 16 N -0.353 5.353 17 C 0.343 3.657 18 O -0.462 6.462 19 C -0.149 4.149 20 C -0.092 4.092 21 C -0.120 4.120 22 C 0.003 3.997 23 N -0.217 5.217 24 C -0.032 4.032 25 C -0.190 4.190 26 C -0.079 4.079 27 C -0.132 4.132 28 C -0.047 4.047 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.253 0.747 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.210 0.790 41 H 0.195 0.805 42 H 0.182 0.818 43 H 0.162 0.838 44 H 0.086 0.914 45 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -1.856 -18.860 -20.718 28.078 hybrid contribution -0.247 1.752 0.771 1.930 sum -2.103 -17.108 -19.947 26.363 Atomic orbital electron populations 1.70189 1.06740 1.26014 1.55213 1.25851 0.96092 1.01702 1.01106 0.85172 0.78709 0.79590 0.76750 1.18750 1.21594 1.22113 1.19586 0.93061 0.85519 1.41203 0.90764 1.44349 1.33690 1.02413 1.53371 1.21838 0.98556 0.86483 0.95566 1.23090 0.85828 1.00710 0.92421 1.87793 1.43127 1.30526 1.69416 1.22760 0.95843 0.85519 0.94237 0.91518 1.21156 0.96516 0.92738 0.87778 1.45700 1.16116 1.43436 1.30047 1.18572 0.83530 0.81775 0.81781 1.90758 1.26451 1.54437 1.74517 1.19844 0.96611 1.00496 0.97947 1.21099 0.95577 0.94581 0.97911 1.20887 0.99473 0.98067 0.93596 1.19293 0.92638 0.93402 0.94349 1.68131 1.35010 1.14245 1.04303 1.23751 0.88723 0.95798 0.94928 1.22334 0.99205 0.97352 1.00149 1.21952 0.98911 0.95177 0.91872 1.18980 0.96098 0.99652 0.98499 1.21545 0.98866 0.93314 0.90987 1.21086 0.88295 0.97550 0.89869 0.93955 0.90907 0.96726 0.92589 0.86064 0.90341 0.92069 0.74726 0.82878 0.82625 0.78976 0.80514 0.81795 0.83780 0.91427 0.98191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.09 11.14 21.65 0.24 -54.85 16 2 C -0.05 -2.87 4.95 84.86 0.42 -2.45 16 3 Si 0.97 44.16 29.59 68.60 2.03 46.19 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 7 C -0.26 -14.19 9.65 84.03 0.81 -13.38 16 8 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 9 N -0.61 -30.37 3.05 -697.55 -2.13 -32.49 16 10 C 0.10 4.02 6.74 86.36 0.58 4.60 16 11 C 0.06 1.77 6.98 72.08 0.50 2.27 16 12 O -0.39 -13.36 10.14 -148.98 -1.51 -14.87 16 13 C 0.08 2.79 2.86 30.69 0.09 2.87 16 14 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 15 C 0.14 4.86 5.37 86.38 0.46 5.32 16 16 N -0.70 -19.66 5.40 -466.05 -2.52 -22.17 16 17 C 0.55 16.63 7.77 86.76 0.67 17.30 16 18 O -0.58 -21.72 16.31 -3.92 -0.06 -21.79 16 19 C -0.15 -3.49 5.87 -20.10 -0.12 -3.61 16 20 C -0.07 -1.36 9.44 22.27 0.21 -1.15 16 21 C -0.10 -1.91 9.95 22.30 0.22 -1.69 16 22 C 0.12 2.57 6.61 40.35 0.27 2.84 16 23 N -0.51 -9.64 10.33 -188.45 -1.95 -11.58 16 24 C 0.14 1.64 11.15 85.06 0.95 2.59 16 25 C -0.17 -1.53 10.03 22.14 0.22 -1.31 16 26 C -0.05 -0.69 9.89 22.53 0.22 -0.47 16 27 C -0.13 -2.53 5.74 -21.29 -0.12 -2.65 16 28 C -0.03 -0.60 9.35 22.81 0.21 -0.39 16 29 C 0.16 7.60 4.73 86.35 0.41 8.01 16 30 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 31 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 32 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.41 9.37 6.34 -92.71 -0.59 8.79 16 38 H 0.15 2.20 6.35 -2.91 -0.02 2.18 16 39 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 41 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 42 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 43 H 0.14 3.12 7.62 -2.91 -0.02 3.09 16 44 H 0.07 3.62 6.14 -2.39 -0.01 3.60 16 45 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 Total: -1.00 -74.48 374.15 0.56 -73.93 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.44 Total: 18.94 kcal Atomic # 6 Polarization: 12.69 SS G_CDS: 6.01 Total: 18.70 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -6.35 Total: -121.10 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.57 Total: -36.66 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -74.48 0.56 -73.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035493325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.516 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds