Wall clock time and date at job start Sat Apr 11 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48496 * 109.46963 * 274.24503 * 3 2 1 5 5 H 1.48502 * 109.46941 * 34.24826 * 3 2 1 6 6 H 1.48502 * 109.46975 * 154.24623 * 3 2 1 7 7 C 1.38818 * 119.99804 * 179.72570 * 2 1 3 8 8 H 1.08003 * 119.99869 * 339.44788 * 7 2 1 9 9 N 1.36937 * 120.00012 * 159.44782 * 7 2 1 10 10 C 1.47149 * 120.98022 * 334.14685 * 9 7 2 11 11 C 1.53298 * 108.38351 * 230.51289 * 10 9 7 12 12 O 1.42956 * 109.22418 * 307.70003 * 11 10 9 13 13 C 1.42963 * 114.16834 * 62.57866 * 12 11 10 14 14 H 1.09005 * 109.50804 * 57.34624 * 13 12 11 15 15 C 1.52997 * 109.51543 * 177.44256 * 13 12 11 16 16 N 1.46504 * 109.47126 * 300.00591 * 15 13 12 17 17 C 1.34774 * 119.99658 * 179.97438 * 16 15 13 18 18 O 1.21549 * 120.00512 * 359.97438 * 17 16 15 19 19 C 1.47881 * 120.00078 * 179.97438 * 17 16 15 20 20 C 1.40578 * 119.70233 * 359.97438 * 19 17 16 21 21 C 1.35815 * 120.73413 * 179.97438 * 20 19 17 22 22 C 1.40551 * 119.98552 * 0.02562 * 21 20 19 23 23 C 1.40815 * 121.13796 * 180.02562 * 22 21 20 24 24 C 1.36552 * 118.20145 * 179.97438 * 23 22 21 25 25 C 1.39419 * 119.93800 * 0.03350 * 24 23 22 26 26 N 1.31018 * 121.71529 * 359.97438 * 25 24 23 27 27 C 1.33749 * 121.34887 * 359.97438 * 26 25 24 28 28 C 1.38410 * 119.71328 * 179.72682 * 19 17 16 29 29 C 1.47146 * 120.97935 * 153.87103 * 9 7 2 30 30 H 0.97004 * 119.99619 * 0.27263 * 1 2 3 31 31 H 1.09003 * 109.68718 * 350.23811 * 10 9 7 32 32 H 1.09000 * 109.68352 * 110.75375 * 10 9 7 33 33 H 1.09002 * 109.50955 * 67.62852 * 11 10 9 34 34 H 1.09000 * 109.50991 * 187.72749 * 11 10 9 35 35 H 1.08999 * 109.46624 * 60.00443 * 15 13 12 36 36 H 1.08995 * 109.47135 * 179.97438 * 15 13 12 37 37 H 0.96995 * 120.00227 * 359.97438 * 16 15 13 38 38 H 1.07993 * 119.63576 * 0.02562 * 20 19 17 39 39 H 1.07998 * 120.00647 * 180.02562 * 21 20 19 40 40 H 1.08001 * 120.90130 * 359.94211 * 23 22 21 41 41 H 1.07996 * 120.03473 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.14741 * 179.97438 * 25 24 23 43 43 H 1.08003 * 120.22628 * 0.02562 * 28 19 17 44 44 H 1.09004 * 109.68000 * 249.20437 * 29 9 7 45 45 H 1.08994 * 109.68581 * 9.76078 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4080 2.0981 -1.3962 5 1 1.4955 2.6250 0.7880 6 1 3.5898 1.4158 0.6083 7 6 2.0102 -1.2022 0.0058 8 1 1.5217 -2.1062 0.3384 9 7 3.3142 -1.2420 -0.4104 10 6 3.8370 -0.2467 -1.3598 11 6 4.5452 -0.9900 -2.4983 12 8 5.4978 -1.9010 -1.9448 13 6 4.9230 -2.9251 -1.1295 14 1 4.1902 -3.4847 -1.7108 15 6 6.0235 -3.8721 -0.6470 16 7 6.6842 -4.4824 -1.8035 17 6 7.6929 -5.3572 -1.6192 18 8 8.0547 -5.6394 -0.4937 19 6 8.3594 -5.9737 -2.7864 20 6 7.9357 -5.6433 -4.0855 21 6 8.5333 -6.1966 -5.1723 22 6 9.5876 -7.1109 -5.0049 23 6 10.2248 -7.6987 -6.1145 24 6 11.2428 -8.5788 -5.8827 25 6 11.6236 -8.8731 -4.5742 26 7 11.0286 -8.3247 -3.5438 27 6 10.0256 -7.4541 -3.7016 28 6 9.3984 -6.8669 -2.5905 29 6 4.2355 -2.2776 0.0833 30 1 -0.4850 0.8401 -0.0040 31 1 3.0142 0.3438 -1.7629 32 1 4.5448 0.4085 -0.8522 33 1 3.8109 -1.5425 -3.0845 34 1 5.0569 -0.2718 -3.1390 35 1 6.7550 -3.3122 -0.0643 36 1 5.5846 -4.6523 -0.0252 37 1 6.3958 -4.2570 -2.7017 38 1 7.1264 -4.9411 -4.2207 39 1 8.1986 -5.9340 -6.1650 40 1 9.9164 -7.4602 -7.1218 41 1 11.7524 -9.0465 -6.7120 42 1 12.4301 -9.5714 -4.4055 43 1 9.7217 -7.1139 -1.5900 44 1 4.9834 -1.8238 0.7337 45 1 3.6769 -3.0326 0.6364 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035549471.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:32 Heat of formation + Delta-G solvation = 9.678183 kcal Electronic energy + Delta-G solvation = -28298.736358 eV Core-core repulsion = 24282.243691 eV Total energy + Delta-G solvation = -4016.492667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.28836 -39.87340 -38.77419 -37.06954 -35.19590 -34.51473 -33.89565 -31.95214 -31.52149 -30.72052 -30.41762 -27.88120 -26.28157 -24.71627 -24.27500 -23.21763 -22.60589 -22.00173 -21.17233 -20.14389 -18.72512 -17.93572 -17.31608 -17.00964 -16.47993 -16.28824 -15.93693 -15.57364 -15.15766 -14.89696 -14.64521 -14.56263 -14.37719 -14.21351 -14.08991 -13.96538 -13.64565 -13.52121 -13.40958 -12.73026 -12.44425 -12.26195 -12.05111 -12.00174 -11.89269 -11.75722 -11.29051 -10.98469 -10.92015 -10.49380 -10.33566 -10.13844 -9.93352 -9.87482 -9.59384 -9.48628 -9.29534 -9.07227 -8.70100 -8.65227 -7.10473 -6.04392 -3.41666 -0.14513 0.22628 1.48280 2.13229 2.96674 3.07425 3.23695 3.42571 3.45171 3.73204 3.84898 3.98320 4.11820 4.26202 4.41309 4.43354 4.45818 4.54422 4.68887 4.71645 4.78677 5.03672 5.15231 5.25901 5.30702 5.33526 5.43638 5.47143 5.52367 5.61692 5.68268 5.75088 5.81784 5.83414 5.90422 5.94638 6.05825 6.06651 6.13230 6.29956 6.36396 6.38910 6.44853 6.64478 7.39281 7.46704 7.51232 7.78394 8.07862 8.20918 8.78688 9.59610 9.95023 11.10995 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.030397 B = 0.001977 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.935298 B =14159.895841 C =14608.835154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.264 4.264 8 H 0.089 0.911 9 N -0.607 5.607 10 C 0.090 3.910 11 C 0.050 3.950 12 O -0.386 6.386 13 C 0.062 3.938 14 H 0.066 0.934 15 C 0.130 3.870 16 N -0.712 5.712 17 C 0.555 3.445 18 O -0.536 6.536 19 C -0.113 4.113 20 C -0.089 4.089 21 C -0.100 4.100 22 C -0.088 4.088 23 C -0.061 4.061 24 C -0.169 4.169 25 C 0.129 3.871 26 N -0.466 5.466 27 C 0.116 3.884 28 C -0.024 4.024 29 C 0.125 3.875 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.404 0.596 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.036 0.964 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.720 -15.109 -15.327 29.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.713 3.287 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.106 0.894 9 N -0.331 5.331 10 C -0.036 4.036 11 C -0.028 4.028 12 O -0.305 6.305 13 C 0.002 3.998 14 H 0.084 0.916 15 C 0.006 3.994 16 N -0.364 5.364 17 C 0.341 3.659 18 O -0.413 6.413 19 C -0.118 4.118 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.090 4.090 23 C -0.087 4.087 24 C -0.189 4.189 25 C -0.045 4.045 26 N -0.173 5.173 27 C -0.005 4.005 28 C -0.043 4.043 29 C -0.002 4.002 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.239 0.761 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.054 0.946 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.139 -15.311 -13.575 29.421 hybrid contribution -0.343 1.426 -1.361 2.001 sum 20.796 -13.886 -14.936 29.127 Atomic orbital electron populations 1.69826 1.05677 1.26687 1.52578 1.25245 0.95257 0.97633 0.99395 0.86965 0.80126 0.84553 0.77047 1.21632 1.22927 1.19439 1.18912 0.84347 0.95091 1.40810 0.89350 1.44356 1.08604 1.31469 1.48715 1.22012 0.97744 0.92724 0.91116 1.23064 0.91871 0.92198 0.95691 1.87800 1.34125 1.41939 1.66680 1.22954 0.93823 0.88557 0.94468 0.91645 1.21474 0.94804 0.95184 0.87913 1.45820 1.35380 1.44260 1.10927 1.18151 0.79954 0.79280 0.88481 1.90795 1.64175 1.62003 1.24377 1.19948 0.98386 0.99895 0.93566 1.21026 0.99434 0.98918 0.91332 1.20887 0.95208 0.96253 0.99538 1.18975 0.97598 0.98427 0.94006 1.21533 0.94218 0.94291 0.98620 1.21980 0.98594 0.99477 0.98863 1.23036 0.97229 0.96184 0.88011 1.68043 1.07042 1.07606 1.34656 1.18771 0.94280 0.95614 0.91794 1.21254 0.91974 0.92069 0.99028 1.21556 0.93082 0.92551 0.93001 0.92626 0.90159 0.94670 0.92981 0.89526 0.90379 0.89627 0.76055 0.84813 0.84506 0.84088 0.84274 0.82127 0.83087 0.94624 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.13 13.97 55.49 0.78 -26.35 16 2 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 3 Si 0.88 21.89 24.32 -169.99 -4.13 17.76 16 4 H -0.29 -6.83 6.69 56.52 0.38 -6.45 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 6 H -0.27 -6.64 6.42 56.52 0.36 -6.27 16 7 C -0.26 -7.17 10.09 -15.06 -0.15 -7.32 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 9 N -0.61 -13.99 2.83 -171.57 -0.49 -14.48 16 10 C 0.09 1.89 4.38 -3.53 -0.02 1.87 16 11 C 0.05 0.83 6.98 37.31 0.26 1.09 16 12 O -0.39 -6.31 10.13 -35.23 -0.36 -6.67 16 13 C 0.06 0.96 2.88 -26.36 -0.08 0.88 16 14 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.78 5.37 -4.04 -0.02 1.76 16 16 N -0.71 -8.73 5.40 -61.24 -0.33 -9.06 16 17 C 0.55 7.48 7.77 -12.31 -0.10 7.39 16 18 O -0.54 -9.03 16.30 5.32 0.09 -8.94 16 19 C -0.11 -1.27 5.87 -105.00 -0.62 -1.89 16 20 C -0.09 -0.76 9.44 -39.57 -0.37 -1.14 16 21 C -0.10 -0.75 9.74 -39.58 -0.39 -1.14 16 22 C -0.09 -0.77 5.75 -106.73 -0.61 -1.38 16 23 C -0.06 -0.37 9.88 -39.22 -0.39 -0.76 16 24 C -0.17 -0.92 10.03 -39.75 -0.40 -1.32 16 25 C 0.13 0.92 11.15 -17.46 -0.19 0.73 16 26 N -0.47 -4.96 10.34 -10.98 -0.11 -5.07 16 27 C 0.12 1.27 6.60 -84.87 -0.56 0.71 16 28 C -0.02 -0.28 9.56 -38.68 -0.37 -0.65 16 29 C 0.12 2.36 6.05 -3.32 -0.02 2.34 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.08 1.82 4.68 -51.93 -0.24 1.57 16 32 H 0.04 0.76 6.81 -51.93 -0.35 0.40 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.40 4.14 6.33 -40.82 -0.26 3.88 16 38 H 0.13 0.89 6.34 -52.49 -0.33 0.55 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.16 0.64 8.06 -52.48 -0.42 0.22 16 43 H 0.15 1.88 7.60 -52.48 -0.40 1.48 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.37 7.96 -51.93 -0.41 0.96 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -34.46 367.46 -8.98 -43.44 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.85 Total: 2.06 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -4.11 Total: 1.77 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.15 Total: -54.96 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.27 Total: -15.61 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.13 Total: 17.76 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.46 -8.98 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035549471.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.117 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds