Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00377 * 2 1 4 4 H 1.48504 * 109.46943 * 268.92363 * 3 2 1 5 5 H 1.48500 * 109.46897 * 28.92027 * 3 2 1 6 6 H 1.48495 * 109.46987 * 148.92502 * 3 2 1 7 7 C 1.38816 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99610 * 343.23528 * 7 2 1 9 9 N 1.36935 * 120.00047 * 163.22636 * 7 2 1 10 10 C 1.47162 * 120.99295 * 329.48252 * 9 7 2 11 11 C 1.53295 * 108.41443 * 230.54196 * 10 9 7 12 12 O 1.42962 * 109.22214 * 307.72247 * 11 10 9 13 13 C 1.42959 * 114.16964 * 62.58061 * 12 11 10 14 14 C 1.47157 * 120.97654 * 149.55851 * 9 7 2 15 15 H 1.09000 * 109.68286 * 249.19654 * 14 9 7 16 16 C 1.53002 * 109.68598 * 9.71443 * 14 9 7 17 17 N 1.46497 * 109.46702 * 298.58037 * 16 14 9 18 18 C 1.34779 * 119.99525 * 180.02562 * 17 16 14 19 19 O 1.21565 * 120.00115 * 359.97438 * 18 17 16 20 20 C 1.47768 * 119.99857 * 179.97438 * 18 17 16 21 21 C 1.40639 * 119.80715 * 0.02562 * 20 18 17 22 22 C 1.35704 * 120.92446 * 180.02562 * 21 20 18 23 23 C 1.40752 * 120.11185 * 0.02562 * 22 21 20 24 24 N 1.33647 * 120.83646 * 179.97438 * 23 22 21 25 25 C 1.31115 * 121.39610 * 180.02562 * 24 23 22 26 26 C 1.39316 * 121.77172 * 0.02562 * 25 24 23 27 27 C 1.36577 * 119.90152 * 359.97438 * 26 25 24 28 28 C 1.40888 * 118.16136 * 359.97438 * 27 26 25 29 29 C 1.38549 * 119.80591 * 180.02562 * 20 18 17 30 30 H 0.97004 * 119.99961 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.64990 * 110.82077 * 10 9 7 32 32 H 1.08994 * 109.68165 * 350.28757 * 10 9 7 33 33 H 1.08996 * 109.51490 * 187.79342 * 11 10 9 34 34 H 1.09000 * 109.51089 * 67.64246 * 11 10 9 35 35 H 1.08996 * 109.51727 * 177.49760 * 13 12 11 36 36 H 1.09001 * 109.56016 * 57.36606 * 13 12 11 37 37 H 1.08997 * 109.46881 * 178.57863 * 16 14 9 38 38 H 1.09002 * 109.47046 * 58.57722 * 16 14 9 39 39 H 0.97002 * 120.00568 * 359.97438 * 17 16 14 40 40 H 1.07995 * 119.53257 * 0.02562 * 21 20 18 41 41 H 1.08000 * 119.93832 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.11628 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.04750 * 179.70430 * 26 25 24 44 44 H 1.07998 * 120.91947 * 180.02562 * 27 26 25 45 45 H 1.07993 * 120.30138 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5206 2.0331 -1.3999 5 1 1.4365 2.6591 0.6771 6 1 3.5362 1.4467 0.7226 7 6 2.0102 -1.2022 -0.0005 8 1 1.5045 -2.1177 0.2689 9 7 3.3359 -1.2273 -0.3428 10 6 3.8894 -0.2581 -1.3019 11 6 4.6752 -1.0280 -2.3694 12 8 5.6146 -1.8946 -1.7288 13 6 5.0172 -2.8996 -0.9060 14 6 4.2489 -2.2255 0.2365 15 1 4.9502 -1.7340 0.9107 16 6 3.4441 -3.2749 1.0059 17 7 2.7191 -2.6273 2.1018 18 6 1.9391 -3.3611 2.9201 19 8 1.8367 -4.5602 2.7485 20 6 1.2083 -2.7080 4.0260 21 6 1.3292 -1.3204 4.2205 22 6 0.6687 -0.6974 5.2291 23 6 -0.1517 -1.4388 6.1000 24 7 -0.8083 -0.8402 7.0983 25 6 -1.5749 -1.5202 7.9162 26 6 -1.7443 -2.8971 7.7886 27 6 -1.1023 -3.5724 6.7900 28 6 -0.2803 -2.8382 5.9124 29 6 0.4079 -3.4662 4.8651 30 1 -0.4850 0.8401 0.0004 31 1 4.5545 0.4322 -0.7829 32 1 3.0780 0.2971 -1.7724 33 1 5.2071 -0.3235 -3.0088 34 1 3.9865 -1.6198 -2.9724 35 1 5.7951 -3.5415 -0.4926 36 1 4.3299 -3.4989 -1.5031 37 1 4.1214 -4.0262 1.4121 38 1 2.7329 -3.7531 0.3323 39 1 2.8011 -1.6705 2.2391 40 1 1.9565 -0.7426 3.5580 41 1 0.7727 0.3691 5.3636 42 1 -2.0889 -0.9989 8.7102 43 1 -2.3788 -3.4304 8.4810 44 1 -1.2222 -4.6396 6.6757 45 1 0.3157 -4.5315 4.7142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051091194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = 14.947678 kcal Electronic energy + Delta-G solvation = -29771.149551 eV Core-core repulsion = 25754.885387 eV Total energy + Delta-G solvation = -4016.264164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.84028 -39.48883 -38.62270 -36.58648 -35.51547 -33.81557 -33.47004 -31.91718 -31.26149 -30.37795 -29.98364 -27.59625 -26.04378 -24.26876 -23.79163 -23.46817 -22.36876 -21.90447 -20.55520 -19.95012 -18.19470 -17.73204 -16.92287 -16.75747 -16.12581 -15.87501 -15.69310 -15.14699 -15.07618 -14.55439 -14.46424 -14.42544 -14.08037 -13.97676 -13.88026 -13.73973 -13.31875 -13.20283 -12.99879 -12.61329 -12.26177 -12.00712 -11.93352 -11.70727 -11.43519 -11.38315 -11.16921 -10.82273 -10.61601 -10.59479 -10.38469 -9.87582 -9.68491 -9.64658 -9.54906 -9.31618 -8.81634 -8.73373 -8.41933 -8.18009 -7.08118 -6.08824 -3.53071 0.27491 0.71013 1.94766 2.58863 3.18036 3.35051 3.37353 3.53566 3.68731 4.19489 4.24222 4.25317 4.36500 4.56224 4.60111 4.65780 4.80528 4.95448 5.07689 5.15829 5.21389 5.25164 5.38077 5.45201 5.49771 5.60644 5.74495 5.75468 5.84546 5.86538 5.87674 5.96116 5.98327 6.05681 6.07630 6.17573 6.30854 6.35218 6.41042 6.46676 6.48296 6.66761 6.79461 6.98165 7.55510 7.75323 7.85094 8.08140 8.19577 8.69266 8.73724 9.52877 9.89926 11.04810 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015462 B = 0.003428 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.489512 B = 8165.946396 C = 9405.308406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.033 3.967 3 Si 0.878 3.122 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.272 4.272 8 H 0.097 0.903 9 N -0.607 5.607 10 C 0.090 3.910 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.127 3.873 15 H 0.047 0.953 16 C 0.136 3.864 17 N -0.687 5.687 18 C 0.555 3.445 19 O -0.557 6.557 20 C -0.115 4.115 21 C -0.060 4.060 22 C -0.101 4.101 23 C 0.142 3.858 24 N -0.477 5.477 25 C 0.133 3.867 26 C -0.186 4.186 27 C -0.046 4.046 28 C -0.113 4.113 29 C -0.035 4.035 30 H 0.265 0.735 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.158 0.842 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 -4.445 10.733 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.168 4.168 3 Si 0.708 3.292 4 H -0.214 1.214 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.400 4.400 8 H 0.114 0.886 9 N -0.333 5.333 10 C -0.035 4.035 11 C -0.032 4.032 12 O -0.306 6.306 13 C -0.025 4.025 14 C 0.021 3.979 15 H 0.064 0.936 16 C 0.012 3.988 17 N -0.337 5.337 18 C 0.342 3.658 19 O -0.438 6.438 20 C -0.118 4.118 21 C -0.080 4.080 22 C -0.119 4.119 23 C 0.021 3.979 24 N -0.185 5.185 25 C -0.040 4.040 26 C -0.206 4.206 27 C -0.072 4.072 28 C -0.115 4.115 29 C -0.055 4.055 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.250 0.750 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.175 0.825 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.516 -4.229 10.578 11.667 hybrid contribution -0.162 0.751 -0.193 0.793 sum 2.354 -3.478 10.385 11.202 Atomic orbital electron populations 1.69796 1.05616 1.26713 1.51748 1.25331 0.95124 0.97375 0.98988 0.87078 0.79683 0.84847 0.77624 1.21412 1.22975 1.19529 1.19012 0.82755 0.94800 1.43426 0.88561 1.44434 1.06396 1.35313 1.47202 1.22067 0.97310 0.92793 0.91310 1.23068 0.92133 0.93138 0.94884 1.87829 1.33428 1.45543 1.63825 1.22903 0.97210 0.89960 0.92383 1.21461 0.92072 0.90787 0.93603 0.93565 1.21182 0.94946 0.94304 0.88385 1.45848 1.46134 1.12472 1.29280 1.18051 0.79388 0.86426 0.81930 1.90714 1.64978 1.14586 1.73555 1.20029 1.00407 0.93990 0.97345 1.21081 0.97539 0.93377 0.96021 1.20658 0.96470 1.00461 0.94320 1.18984 0.95424 0.89995 0.93512 1.68050 1.07381 1.39334 1.03724 1.22973 0.93428 0.91506 0.96111 1.21839 1.02424 0.96078 1.00267 1.21535 0.92831 1.00326 0.92523 1.18781 1.00320 0.94454 0.97947 1.21378 0.92354 1.00402 0.91357 0.92527 0.94792 0.90007 0.89744 0.92988 0.89333 0.92869 0.91808 0.90845 0.74998 0.84477 0.84304 0.82526 0.84574 0.84216 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 13.97 55.49 0.78 -24.70 16 2 C 0.03 0.85 5.29 -17.43 -0.09 0.75 16 3 Si 0.88 20.44 24.28 -169.99 -4.13 16.31 16 4 H -0.29 -6.57 6.54 56.52 0.37 -6.20 16 5 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.12 6.65 56.52 0.38 -5.74 16 7 C -0.27 -6.67 7.59 -15.06 -0.11 -6.79 16 8 H 0.10 2.60 5.98 -52.48 -0.31 2.28 16 9 N -0.61 -12.87 2.78 -164.29 -0.46 -13.33 16 10 C 0.09 1.82 4.38 -3.53 -0.02 1.81 16 11 C 0.05 0.79 6.99 37.31 0.26 1.05 16 12 O -0.39 -6.75 10.74 -35.23 -0.38 -7.13 16 13 C 0.05 0.86 6.29 37.31 0.23 1.10 16 14 C 0.13 2.26 3.20 -67.42 -0.22 2.04 16 15 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.38 4.44 -4.04 -0.02 2.36 16 17 N -0.69 -12.62 3.74 -61.28 -0.23 -12.85 16 18 C 0.56 10.52 7.77 -12.36 -0.10 10.42 16 19 O -0.56 -11.71 16.31 5.31 0.09 -11.63 16 20 C -0.11 -1.96 5.87 -104.98 -0.62 -2.57 16 21 C -0.06 -0.97 9.44 -39.58 -0.37 -1.35 16 22 C -0.10 -1.56 9.95 -39.54 -0.39 -1.95 16 23 C 0.14 2.19 6.61 -84.78 -0.56 1.63 16 24 N -0.48 -6.87 10.33 -10.92 -0.11 -6.98 16 25 C 0.13 1.44 11.15 -17.46 -0.19 1.24 16 26 C -0.19 -1.76 10.03 -39.78 -0.40 -2.16 16 27 C -0.05 -0.51 9.89 -39.18 -0.39 -0.89 16 28 C -0.11 -1.62 5.74 -106.82 -0.61 -2.23 16 29 C -0.04 -0.54 9.35 -38.74 -0.36 -0.90 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.03 0.69 6.82 -51.93 -0.35 0.34 16 32 H 0.08 1.78 4.88 -51.93 -0.25 1.53 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 39 H 0.41 7.63 5.38 -40.82 -0.22 7.41 16 40 H 0.14 2.18 6.35 -52.49 -0.33 1.85 16 41 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.14 2.04 7.62 -52.49 -0.40 1.64 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -31.65 360.33 -8.65 -40.30 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.69 Total: 10.99 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -3.96 Total: 3.58 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.02 Total: -57.86 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.29 Total: -18.75 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.13 Total: 16.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.65 -8.65 -40.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051091194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.252 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds