Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.38185 * 126.45405 * 139.74292 * 3 2 1 5 5 N 1.34421 * 108.38567 * 179.97438 * 4 3 2 6 6 H 0.97005 * 125.40567 * 179.97438 * 5 4 3 7 7 C 1.37749 * 109.19176 * 359.97438 * 5 4 3 8 8 C 1.46796 * 125.85242 * 179.97438 * 7 5 4 9 9 O 1.21677 * 119.99685 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99845 * 0.03210 * 8 7 5 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.64647 * 36.68371 * 11 10 8 13 13 C 1.54325 * 110.71819 * 273.53997 * 11 10 8 14 14 N 1.47024 * 107.26995 * 219.44740 * 13 11 10 15 15 C 1.36935 * 125.64654 * 178.91099 * 14 13 11 16 16 H 1.08000 * 120.00177 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99951 * 0.02562 * 15 14 13 18 18 N 1.31609 * 120.00264 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99899 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47347 * 90.00165 * 19 17 15 21 21 H 1.48503 * 109.46984 * 210.00310 * 19 17 15 22 22 H 1.48502 * 109.47204 * 329.99965 * 19 17 15 23 23 C 1.47426 * 108.70427 * 358.94016 * 14 13 11 24 24 C 1.54905 * 104.83156 * 24.13096 * 23 14 13 25 25 H 1.09001 * 111.00199 * 204.91526 * 24 23 14 26 26 N 1.46499 * 111.00769 * 81.06240 * 24 23 14 27 27 C 1.35312 * 125.86226 * 332.52118 * 26 24 23 28 28 C 1.35356 * 106.17175 * 179.90062 * 27 26 24 29 29 N 1.33775 * 106.49568 * 0.35444 * 28 27 26 30 30 N 1.28632 * 108.88472 * 359.76946 * 29 28 27 31 31 C 1.36410 * 108.29735 * 0.23264 * 7 5 4 32 32 H 1.07997 * 125.80622 * 359.93189 * 4 3 2 33 33 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 34 34 H 1.08995 * 109.88293 * 338.86571 * 13 11 10 35 35 H 1.09007 * 109.88258 * 99.87722 * 13 11 10 36 36 H 0.96998 * 120.00585 * 179.97438 * 18 17 15 37 37 H 1.08998 * 110.36587 * 142.97154 * 23 14 13 38 38 H 1.09004 * 110.36483 * 265.29109 * 23 14 13 39 39 H 1.07999 * 126.91736 * 0.02562 * 27 26 24 40 40 H 1.07996 * 126.75347 * 180.12162 * 28 27 26 41 41 H 1.08002 * 126.47833 * 179.77352 * 31 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3886 0.8492 -0.7182 5 7 4.6667 0.5320 -0.4484 6 1 5.4460 0.9728 -0.8217 7 6 4.6941 -0.5184 0.4423 8 6 5.9009 -1.1559 0.9830 9 8 5.8009 -2.0811 1.7669 10 7 7.1195 -0.7162 0.6111 11 6 8.3237 -1.3528 1.1503 12 1 8.1739 -2.4268 1.2610 13 6 8.7215 -0.7151 2.4982 14 7 10.1881 -0.6136 2.5171 15 6 10.9382 -0.0818 3.5318 16 1 12.0146 -0.0527 3.4496 17 6 10.3150 0.4200 4.6661 18 7 9.0032 0.3842 4.7666 19 14 11.3382 1.1462 6.0500 20 1 11.5288 2.5999 5.8146 21 1 10.6377 0.9419 7.3434 22 1 12.6617 0.4740 6.0924 23 6 10.7173 -1.1786 1.2624 24 6 9.5517 -1.0558 0.2496 25 1 9.6433 -1.7982 -0.5433 26 7 9.4798 0.2975 -0.3068 27 6 9.8956 1.4298 0.3063 28 6 9.6460 2.4404 -0.5588 29 7 9.0897 1.8851 -1.6413 30 7 9.0053 0.6144 -1.4605 31 6 3.4078 -0.8685 0.7314 32 1 3.0592 1.6334 -1.3838 33 1 7.1990 0.0211 -0.0140 34 1 8.2800 0.2778 2.5831 35 1 8.3804 -1.3439 3.3207 36 1 8.5677 0.7345 5.5594 37 1 11.5785 -0.6042 0.9213 38 1 10.9895 -2.2248 1.4026 39 1 10.3395 1.5107 1.2876 40 1 9.8516 3.4892 -0.4039 41 1 3.0914 -1.6593 1.3955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069907878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = 185.056483 kcal Electronic energy + Delta-G solvation = -29562.871018 eV Core-core repulsion = 25482.735733 eV Total energy + Delta-G solvation = -4080.135285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.11862 -41.74415 -39.45866 -37.83842 -36.48054 -34.39579 -33.62894 -31.93434 -31.64103 -30.71455 -30.11962 -28.82789 -27.67545 -25.08905 -23.44305 -23.02064 -22.52180 -22.33054 -20.67378 -20.38441 -20.17410 -19.36138 -17.72837 -17.15094 -16.68740 -16.35953 -15.78248 -15.48167 -15.40865 -14.85760 -14.58782 -14.33695 -14.11381 -14.02797 -13.88224 -13.62306 -13.47396 -13.19522 -13.16100 -12.88313 -12.59684 -12.44959 -12.08915 -11.92823 -11.54747 -11.44226 -11.19735 -10.93593 -10.76147 -10.69611 -10.31453 -10.14420 -10.06052 -9.90405 -9.36381 -9.12317 -9.01485 -8.88402 -8.58343 -7.23429 -5.98985 -3.38945 1.23029 1.60557 1.83061 2.46854 2.55807 2.73413 2.76169 3.06722 3.24238 3.25704 3.30620 3.33430 3.54827 4.03354 4.22859 4.37110 4.58640 4.63325 4.70071 4.84030 4.94763 4.98145 5.23335 5.32015 5.38561 5.46867 5.59128 5.65039 5.68845 5.70327 5.94483 6.01138 6.08262 6.16954 6.27855 6.38996 6.40041 6.86886 6.89750 7.16869 7.23377 7.45643 7.52065 7.54039 7.89063 8.16495 8.68703 8.87832 9.47956 10.06365 11.10755 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.003655 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.587240 B = 7659.113547 C = 8905.606980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.295 3.705 3 C -0.138 4.138 4 C 0.096 3.904 5 N -0.521 5.521 6 H 0.427 0.573 7 C -0.041 4.041 8 C 0.590 3.410 9 O -0.515 6.515 10 N -0.716 5.716 11 C 0.112 3.888 12 H 0.115 0.885 13 C 0.168 3.832 14 N -0.601 5.601 15 C -0.248 4.248 16 H 0.083 0.917 17 C 0.004 3.996 18 N -0.911 5.911 19 Si 0.914 3.086 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.128 3.872 24 C 0.113 3.887 25 H 0.121 0.879 26 N -0.277 5.277 27 C -0.002 4.002 28 C -0.075 4.075 29 N -0.278 5.278 30 N -0.116 5.116 31 C -0.057 4.057 32 H 0.188 0.812 33 H 0.392 0.608 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.257 0.743 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.205 0.795 40 H 0.185 0.815 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 1.090 -11.488 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.020 4.020 3 C -0.148 4.148 4 C -0.049 4.049 5 N -0.115 5.115 6 H 0.265 0.735 7 C -0.153 4.153 8 C 0.376 3.624 9 O -0.389 6.389 10 N -0.367 5.367 11 C 0.006 3.994 12 H 0.133 0.867 13 C 0.042 3.958 14 N -0.329 5.329 15 C -0.375 4.375 16 H 0.101 0.899 17 C -0.194 4.194 18 N -0.556 5.556 19 Si 0.744 3.256 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.000 4.000 24 C 0.009 3.991 25 H 0.139 0.861 26 N -0.070 5.070 27 C -0.154 4.154 28 C -0.232 4.232 29 N -0.145 5.145 30 N -0.095 5.095 31 C -0.084 4.084 32 H 0.205 0.795 33 H 0.227 0.773 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.222 0.778 40 H 0.202 0.798 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.346 -0.028 -11.993 12.756 hybrid contribution 1.903 1.365 1.406 2.731 sum -2.444 1.336 -10.587 10.947 Atomic orbital electron populations 1.81262 1.11814 1.08981 1.09637 1.24619 0.91396 0.93092 0.92905 1.15363 0.85017 1.05001 1.09440 1.22264 0.82251 0.99981 1.00402 1.41855 1.08382 1.26793 1.34456 0.73463 1.20164 0.95650 0.96762 1.02728 1.16922 0.81503 0.82940 0.80995 1.90886 1.85976 1.28418 1.33663 1.45727 1.05491 1.37506 1.48013 1.22923 0.81298 0.99667 0.95526 0.86739 1.21656 0.83984 0.99973 0.90181 1.44474 1.01578 1.71148 1.15683 1.18979 0.89988 1.33823 0.94757 0.89880 1.24850 0.95854 1.00487 0.98208 1.69920 1.06925 1.49749 1.28995 0.86105 0.79029 0.78913 0.81561 1.21341 1.21501 1.20533 1.21946 0.92790 0.99223 0.86039 1.23385 0.99865 0.78698 0.97152 0.86098 1.47296 1.39118 1.08961 1.11622 1.24257 1.03658 0.84739 1.02699 1.23576 1.06596 1.01186 0.91878 1.75011 1.16993 0.99321 1.23147 1.78205 1.19721 1.09824 1.01715 1.21039 0.89134 0.99156 0.99072 0.79514 0.77340 0.92372 0.91964 0.93209 0.92195 0.92674 0.77802 0.79767 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.11 18.54 41.84 0.78 -5.34 16 2 C 0.29 3.45 15.83 -22.48 -0.36 3.10 16 3 C -0.14 -1.40 5.97 -106.84 -0.64 -2.03 16 4 C 0.10 0.73 11.90 -16.44 -0.20 0.53 16 5 N -0.52 -4.62 5.92 -9.27 -0.05 -4.68 16 6 H 0.43 3.21 8.14 -40.82 -0.33 2.88 16 7 C -0.04 -0.51 6.99 -82.41 -0.58 -1.08 16 8 C 0.59 9.05 7.79 -12.80 -0.10 8.95 16 9 O -0.51 -9.64 16.58 5.21 0.09 -9.56 16 10 N -0.72 -10.32 5.08 -53.30 -0.27 -10.59 16 11 C 0.11 1.76 3.11 -66.09 -0.21 1.56 16 12 H 0.11 1.79 7.69 -51.93 -0.40 1.39 16 13 C 0.17 3.42 4.74 -3.06 -0.01 3.41 16 14 N -0.60 -12.15 2.23 -170.07 -0.38 -12.53 16 15 C -0.25 -5.75 10.06 -15.06 -0.15 -5.90 16 16 H 0.08 1.86 7.83 -52.49 -0.41 1.45 16 17 C 0.00 0.11 5.49 -17.43 -0.10 0.01 16 18 N -0.91 -23.88 10.31 55.49 0.57 -23.31 16 19 Si 0.91 19.82 29.55 -169.99 -5.02 14.80 16 20 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 23 C 0.13 1.97 6.22 -2.53 -0.02 1.96 16 24 C 0.11 1.54 4.06 -65.78 -0.27 1.27 16 25 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 26 N -0.28 -3.94 2.46 -52.68 -0.13 -4.07 16 27 C 0.00 -0.03 10.01 -17.04 -0.17 -0.20 16 28 C -0.08 -1.03 12.05 -17.73 -0.21 -1.24 16 29 N -0.28 -4.09 12.41 30.24 0.38 -3.71 16 30 N -0.12 -1.68 12.18 60.35 0.74 -0.94 16 31 C -0.06 -0.67 10.54 -39.09 -0.41 -1.08 16 32 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.39 5.21 5.79 -40.82 -0.24 4.97 16 34 H 0.06 1.35 7.27 -51.93 -0.38 0.97 16 35 H 0.06 1.53 7.51 -51.93 -0.39 1.14 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 37 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.21 3.43 6.80 -52.49 -0.36 3.08 16 40 H 0.19 1.98 8.06 -52.49 -0.42 1.55 16 41 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -29.92 358.97 -5.47 -35.40 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -4.16 Total: 9.88 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -3.41 Total: 9.24 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: 1.62 Total: -65.16 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.92 -5.47 -35.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069907878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.453 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds