Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36351 * 125.84582 * 129.43593 * 3 2 1 5 5 C 1.41427 * 107.01696 * 179.97438 * 4 3 2 6 6 C 1.47370 * 126.46815 * 179.97438 * 5 4 3 7 7 O 1.21611 * 120.00395 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00169 * 179.97438 * 6 5 4 9 9 C 1.47022 * 125.64528 * 0.02753 * 8 6 5 10 10 C 1.54327 * 107.27336 * 178.90269 * 9 8 6 11 11 H 1.08993 * 110.72079 * 96.16743 * 10 9 8 12 12 N 1.46496 * 110.72108 * 219.44674 * 10 9 8 13 13 C 1.36943 * 119.99804 * 273.54304 * 12 10 9 14 14 H 1.07998 * 119.99804 * 359.97438 * 13 12 10 15 15 C 1.38807 * 119.99940 * 180.02562 * 13 12 10 16 16 N 1.31627 * 119.99848 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00122 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47118 * 90.00579 * 17 15 13 19 19 H 1.48503 * 109.47267 * 210.00293 * 17 15 13 20 20 H 1.48491 * 109.47267 * 330.00445 * 17 15 13 21 21 C 1.55165 * 102.94078 * 337.80587 * 10 9 8 22 22 H 1.08995 * 111.00547 * 153.57467 * 21 10 9 23 23 N 1.46503 * 111.00460 * 277.42885 * 21 10 9 24 24 C 1.35307 * 125.86658 * 84.71322 * 23 21 10 25 25 C 1.35355 * 106.17551 * 179.90508 * 24 23 21 26 26 N 1.33773 * 106.49169 * 0.35314 * 25 24 23 27 27 N 1.28630 * 108.88887 * 359.77248 * 26 25 24 28 28 C 1.47425 * 125.65136 * 179.97438 * 8 6 5 29 29 C 1.38127 * 107.06232 * 0.23539 * 5 4 3 30 30 N 1.34429 * 108.38454 * 359.60514 * 29 5 4 31 31 H 0.97003 * 125.38482 * 180.15010 * 30 29 5 32 32 H 1.08008 * 126.49043 * 359.93628 * 4 3 2 33 33 H 1.08997 * 109.88723 * 59.48678 * 9 8 6 34 34 H 1.08998 * 109.88661 * 298.31659 * 9 8 6 35 35 H 0.96996 * 120.00232 * 93.54399 * 12 10 9 36 36 H 0.96999 * 119.99494 * 179.97438 * 16 15 13 37 37 H 1.08004 * 126.91503 * 0.02562 * 24 23 21 38 38 H 1.07996 * 126.75810 * 180.12098 * 25 24 23 39 39 H 1.08997 * 110.36855 * 323.00479 * 28 8 6 40 40 H 1.08999 * 110.36490 * 85.21794 * 28 8 6 41 41 H 1.07999 * 125.80606 * 179.76369 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3661 0.7031 -0.8536 5 6 4.7049 0.4142 -0.5007 6 6 5.9162 0.9475 -1.1489 7 8 5.8162 1.7163 -2.0858 8 7 7.1349 0.5831 -0.7034 9 6 7.3994 -0.3347 0.4143 10 6 8.9313 -0.4731 0.5409 11 1 9.3189 0.2090 1.2974 12 7 9.3030 -1.8563 0.8486 13 6 9.3319 -2.2843 2.1491 14 1 9.0810 -1.6021 2.9478 15 6 9.6847 -3.5948 2.4407 16 7 9.7130 -4.0060 3.6908 17 14 10.1194 -4.7746 1.0592 18 1 11.5779 -4.7044 0.7889 19 1 9.7558 -6.1583 1.4572 20 1 9.3701 -4.3991 -0.1666 21 6 9.4343 -0.0706 -0.8707 22 1 10.4491 0.3245 -0.8259 23 7 9.3537 -1.2011 -1.7991 24 6 8.2596 -1.5720 -2.5034 25 6 8.6270 -2.6542 -3.2285 26 7 9.9088 -2.8940 -2.9301 27 7 10.3099 -2.0154 -2.0805 28 6 8.4234 1.0379 -1.2568 29 6 4.6627 -0.4667 0.5623 30 7 3.3747 -0.7075 0.8626 31 1 3.0629 -1.2909 1.5721 32 1 3.0381 1.3559 -1.6491 33 1 6.9551 -1.3083 0.2077 34 1 6.9870 0.0752 1.3362 35 1 9.5287 -2.4689 0.1312 36 1 9.9591 -4.9219 3.8945 37 1 7.2889 -1.0985 -2.4912 38 1 8.0063 -3.2162 -3.9107 39 1 8.3589 1.1316 -2.3408 40 1 8.7129 1.9896 -0.8110 41 1 5.5189 -0.8882 1.0681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070179818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = 168.409797 kcal Electronic energy + Delta-G solvation = -29751.772234 eV Core-core repulsion = 25670.915094 eV Total energy + Delta-G solvation = -4080.857140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.29474 -42.57120 -40.82349 -38.86463 -37.61080 -36.04936 -34.95327 -33.37598 -32.60507 -31.95043 -31.51161 -30.32486 -29.27833 -26.20404 -25.20948 -23.78657 -23.62892 -23.52402 -22.32527 -21.56290 -21.07920 -20.11824 -19.57355 -18.70814 -17.85306 -17.26540 -16.86304 -16.54240 -16.46981 -16.19468 -15.94419 -15.85365 -15.67324 -15.23899 -14.94123 -14.82867 -14.58349 -14.23731 -14.19134 -14.03699 -13.88144 -13.80124 -13.65038 -13.28703 -13.09264 -13.02128 -12.79280 -12.66176 -12.38037 -12.13432 -11.90639 -11.82712 -11.29329 -11.02864 -10.95430 -10.31863 -10.24225 -9.68286 -9.43750 -9.42261 -8.07259 -5.40234 0.34810 0.66056 0.74563 1.20082 1.30444 1.36872 1.40825 1.43324 1.63744 1.88379 2.12460 2.25682 2.41251 2.54087 2.93499 3.06495 3.20431 3.42822 3.49755 3.67231 3.77317 3.93819 4.05349 4.12612 4.15309 4.23499 4.31899 4.34595 4.46903 4.61379 4.69562 4.79947 4.86979 4.92058 5.01602 5.16089 5.25416 5.45058 5.57348 5.68759 5.76799 6.17277 6.20049 6.36489 6.45314 7.01393 7.20520 7.54422 7.76432 7.89799 9.12388 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.004136 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.768064 B = 6768.900515 C = 8051.173730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.304 3.696 3 C 0.041 3.959 4 C -0.049 4.049 5 C -0.246 4.246 6 C 0.611 3.389 7 O -0.575 6.575 8 N -0.611 5.611 9 C 0.069 3.931 10 C 0.162 3.838 11 H 0.120 0.880 12 N -0.744 5.744 13 C -0.219 4.219 14 H 0.092 0.908 15 C -0.036 4.036 16 N -0.967 5.967 17 Si 0.923 3.077 18 H -0.295 1.295 19 H -0.299 1.299 20 H -0.274 1.274 21 C 0.106 3.894 22 H 0.154 0.846 23 N -0.267 5.267 24 C -0.028 4.028 25 C -0.065 4.065 26 N -0.312 5.312 27 N -0.118 5.118 28 C 0.114 3.886 29 C 0.102 3.898 30 N -0.504 5.504 31 H 0.442 0.558 32 H 0.162 0.838 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.364 0.636 36 H 0.257 0.743 37 H 0.202 0.798 38 H 0.214 0.786 39 H 0.091 0.909 40 H 0.133 0.867 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.500 11.627 -7.835 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.011 4.011 3 C -0.070 4.070 4 C -0.077 4.077 5 C -0.255 4.255 6 C 0.403 3.597 7 O -0.456 6.456 8 N -0.345 5.345 9 C -0.056 4.056 10 C 0.051 3.949 11 H 0.138 0.862 12 N -0.387 5.387 13 C -0.350 4.350 14 H 0.109 0.891 15 C -0.229 4.229 16 N -0.617 5.617 17 Si 0.755 3.245 18 H -0.222 1.222 19 H -0.226 1.226 20 H -0.200 1.200 21 C 0.004 3.996 22 H 0.171 0.829 23 N -0.061 5.061 24 C -0.180 4.180 25 C -0.223 4.223 26 N -0.177 5.177 27 N -0.096 5.096 28 C -0.009 4.009 29 C -0.042 4.042 30 N -0.098 5.098 31 H 0.284 0.716 32 H 0.180 0.820 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.199 0.801 36 H 0.066 0.934 37 H 0.219 0.781 38 H 0.230 0.770 39 H 0.109 0.891 40 H 0.151 0.849 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -9.997 11.569 -7.709 17.123 hybrid contribution -0.353 -1.398 -0.431 1.505 sum -10.350 10.171 -8.140 16.638 Atomic orbital electron populations 1.81354 1.12416 1.09817 1.08775 1.24317 0.90801 0.92826 0.93155 1.15010 0.82620 1.07983 1.01399 1.21123 0.90188 0.98231 0.98185 1.19345 0.93051 1.09134 1.03994 1.17085 0.81348 0.79586 0.81693 1.90792 1.86603 1.37747 1.30410 1.48276 1.04899 1.47068 1.34211 1.23407 0.98733 0.93436 0.90045 1.21922 0.92366 0.87261 0.93354 0.86234 1.42843 1.82285 1.08863 1.04709 1.19080 1.36810 0.94945 0.84177 0.89074 1.25058 1.02746 0.98773 0.96370 1.69777 1.56594 1.17529 1.17758 0.85939 0.78086 0.79891 0.80585 1.22181 1.22570 1.20012 1.23655 1.04611 0.83341 0.88020 0.82856 1.47478 1.07867 1.21783 1.28975 1.23866 0.95393 1.00487 0.98287 1.24136 0.93398 0.99484 1.05277 1.75044 1.13322 1.18621 1.10761 1.78298 1.15952 1.00865 1.14520 1.22584 0.80626 0.96219 1.01471 1.23654 0.87077 0.96852 0.96629 1.41707 1.05222 1.35789 1.27094 0.71616 0.82031 0.90703 0.87793 0.80123 0.93393 0.78105 0.76953 0.89083 0.84905 0.77219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.11 18.54 19.00 0.35 -9.75 16 2 C 0.30 5.38 15.88 88.33 1.40 6.78 16 3 C 0.04 0.59 6.90 39.03 0.27 0.86 16 4 C -0.05 -0.79 10.59 22.62 0.24 -0.55 16 5 C -0.25 -4.13 6.11 -20.12 -0.12 -4.26 16 6 C 0.61 12.34 7.60 86.65 0.66 13.00 16 7 O -0.57 -15.34 17.18 -4.06 -0.07 -15.41 16 8 N -0.61 -10.40 2.17 -815.73 -1.77 -12.17 16 9 C 0.07 1.28 4.35 86.73 0.38 1.66 16 10 C 0.16 3.91 3.46 46.18 0.16 4.07 16 11 H 0.12 2.54 8.12 -2.39 -0.02 2.52 16 12 N -0.74 -27.78 4.93 -317.33 -1.56 -29.34 16 13 C -0.22 -10.22 10.46 84.03 0.88 -9.34 16 14 H 0.09 4.35 8.06 -2.91 -0.02 4.33 16 15 C -0.04 -1.92 5.50 84.86 0.47 -1.46 16 16 N -0.97 -56.09 13.97 21.65 0.30 -55.79 16 17 Si 0.92 45.40 27.74 68.60 1.90 47.30 16 18 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 19 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 20 H -0.27 -13.14 6.52 99.48 0.65 -12.49 16 21 C 0.11 2.18 4.06 46.39 0.19 2.37 16 22 H 0.15 2.67 8.14 -2.39 -0.02 2.65 16 23 N -0.27 -7.32 2.46 -320.57 -0.79 -8.10 16 24 C -0.03 -0.71 10.01 83.49 0.84 0.13 16 25 C -0.07 -1.80 12.06 83.73 1.01 -0.79 16 26 N -0.31 -11.21 12.41 -58.26 -0.72 -11.94 16 27 N -0.12 -4.17 12.18 37.02 0.45 -3.72 16 28 C 0.11 1.73 5.89 86.86 0.51 2.25 16 29 C 0.10 1.30 10.42 84.27 0.88 2.17 16 30 N -0.50 -5.31 6.02 -186.47 -1.12 -6.44 16 31 H 0.44 2.42 8.96 -92.71 -0.83 1.58 16 32 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.07 1.57 6.71 -2.39 -0.02 1.55 16 34 H 0.10 1.53 7.03 -2.39 -0.02 1.51 16 35 H 0.36 14.94 3.77 -92.71 -0.35 14.59 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.20 4.09 6.78 -2.91 -0.02 4.07 16 38 H 0.21 4.25 8.06 -2.91 -0.02 4.23 16 39 H 0.09 1.51 7.77 -2.39 -0.02 1.49 16 40 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.21 2.39 4.38 -2.91 -0.01 2.37 16 Total: -1.00 -75.71 353.90 4.62 -71.09 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.10 Total: 17.38 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 7.75 Total: 16.88 kcal Atomic # 7 Polarization: -132.39 SS G_CDS: -4.86 Total: -137.25 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.07 Total: -15.41 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Total: -75.71 4.62 -71.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070179818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.501 kcal (2) G-P(sol) polarization free energy of solvation -75.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds