Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00268 * 2 1 4 4 H 1.48503 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47360 * 299.99968 * 3 2 1 6 6 H 1.48504 * 109.47057 * 59.99873 * 3 2 1 7 7 C 1.38816 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00042 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.46661 * 125.28451 * 179.97438 * 9 7 2 11 11 C 1.53515 * 107.04621 * 197.41630 * 10 9 7 12 12 H 1.09005 * 112.80250 * 211.54001 * 11 10 9 13 13 C 1.54789 * 109.68480 * 84.09230 * 11 10 9 14 14 C 1.54952 * 101.45155 * 212.91855 * 13 11 10 15 15 N 1.47351 * 104.89935 * 37.25425 * 14 13 11 16 16 C 1.34779 * 125.51895 * 156.77730 * 15 14 13 17 17 O 1.21555 * 119.99443 * 176.21004 * 16 15 14 18 18 C 1.47860 * 120.00239 * 356.20504 * 16 15 14 19 19 C 1.39611 * 119.96889 * 27.48291 * 18 16 15 20 20 C 1.38087 * 119.68404 * 179.97438 * 19 18 16 21 21 C 1.37854 * 120.10900 * 0.02873 * 20 19 18 22 22 C 1.39025 * 121.04342 * 359.96982 * 21 20 19 23 23 C 1.39129 * 119.08882 * 359.75169 * 22 21 20 24 24 N 1.39586 * 110.21049 * 180.02562 * 22 21 20 25 25 C 1.34354 * 112.25134 * 0.02562 * 24 22 21 26 26 O 1.21286 * 126.42567 * 179.97438 * 25 24 22 27 27 C 1.51191 * 132.65293 * 179.97438 * 21 20 19 28 28 C 1.47255 * 108.95334 * 336.73750 * 15 14 13 29 29 H 1.09004 * 111.94393 * 235.60850 * 28 15 14 30 30 C 1.46484 * 125.29223 * 0.02562 * 9 7 2 31 31 H 0.96998 * 119.99551 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.91473 * 316.76624 * 10 9 7 33 33 H 1.08995 * 109.91623 * 78.06118 * 10 9 7 34 34 H 1.08996 * 111.03005 * 94.87955 * 13 11 10 35 35 H 1.08994 * 111.02590 * 330.96007 * 13 11 10 36 36 H 1.09001 * 110.35438 * 278.40195 * 14 13 11 37 37 H 1.08998 * 110.35249 * 156.11048 * 14 13 11 38 38 H 1.07995 * 120.16051 * 0.02562 * 19 18 16 39 39 H 1.07998 * 119.95079 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.99290 * 180.27019 * 23 22 21 41 41 H 0.97003 * 123.87589 * 179.97438 * 24 22 21 42 42 H 1.08993 * 110.50576 * 298.64757 * 27 21 20 43 43 H 1.09005 * 110.50412 * 61.34899 * 27 21 20 44 44 H 1.08993 * 109.71571 * 58.27992 * 30 9 7 45 45 H 1.09003 * 109.67400 * 297.70676 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 1.9385 -3.7204 0.0005 11 6 0.8544 -4.7146 -0.4388 12 1 0.9730 -5.6976 0.0170 13 6 0.7823 -4.7581 -1.9844 14 6 -0.7267 -5.0244 -2.2146 15 7 -1.4126 -4.2473 -1.1673 16 6 -2.6878 -3.8143 -1.2221 17 8 -3.1755 -3.2384 -0.2692 18 6 -3.4934 -4.0397 -2.4413 19 6 -3.2134 -5.1270 -3.2711 20 6 -3.9698 -5.3322 -4.4080 21 6 -4.9959 -4.4666 -4.7215 22 6 -5.2898 -3.3785 -3.9076 23 6 -4.5347 -3.1703 -2.7578 24 7 -6.3635 -2.6585 -4.4343 25 6 -6.8271 -3.1974 -5.5743 26 8 -7.7492 -2.7825 -6.2442 27 6 -5.9823 -4.4190 -5.8663 28 6 -0.4795 -4.0213 -0.0508 29 1 -0.8832 -4.3791 0.8963 30 6 -0.1332 -2.5230 -0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 2.7719 -3.7456 -0.7014 33 1 2.2863 -3.9691 1.0031 34 1 1.3882 -5.5726 -2.3814 35 1 1.0814 -3.8034 -2.4169 36 1 -0.9456 -6.0864 -2.1033 37 1 -1.0266 -4.6762 -3.2029 38 1 -2.4096 -5.8048 -3.0246 39 1 -3.7573 -6.1722 -5.0527 40 1 -4.7532 -2.3321 -2.1128 41 1 -6.7330 -1.8610 -4.0238 42 1 -5.4597 -4.3048 -6.8160 43 1 -6.6007 -5.3167 -5.8751 44 1 -0.5483 -2.0201 -0.8738 45 1 -0.5433 -2.0812 0.9077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075823551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 18.970758 kcal Electronic energy + Delta-G solvation = -29706.818017 eV Core-core repulsion = 25690.728306 eV Total energy + Delta-G solvation = -4016.089711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.70991 -40.31977 -38.69606 -37.66082 -35.84199 -34.93503 -32.61821 -32.25945 -30.70796 -30.02069 -29.21036 -28.09199 -26.71506 -24.58392 -23.60833 -22.94328 -21.87244 -21.62864 -20.55702 -19.73466 -19.02185 -18.14636 -17.31993 -16.82994 -16.33015 -16.14820 -15.90964 -15.59568 -15.04194 -14.63092 -14.59515 -14.36145 -14.06673 -13.95170 -13.62251 -13.42912 -13.35388 -12.90417 -12.86110 -12.64082 -12.23046 -12.21675 -11.76607 -11.45597 -11.36551 -11.18990 -11.10712 -11.00113 -10.80543 -10.56042 -10.41779 -10.20647 -10.06989 -9.87903 -9.72938 -9.61890 -9.11041 -8.59640 -8.32610 -8.25132 -6.81852 -5.68417 -3.04832 0.64529 0.98295 2.11482 2.64718 2.96437 3.20564 3.40041 3.45100 3.48180 3.71841 3.79468 4.04351 4.46641 4.49864 4.53692 4.72391 4.88141 4.94305 4.99417 5.01159 5.13908 5.18034 5.38604 5.41705 5.48383 5.52584 5.55882 5.67937 5.76047 5.78179 5.89749 6.00853 6.02050 6.12184 6.15237 6.24753 6.34109 6.45238 6.56263 6.56921 6.59836 6.68451 6.83197 7.55367 7.62036 7.64686 7.86875 7.89690 8.29001 8.45723 9.23104 9.84046 10.46476 11.41101 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.003120 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.703811 B = 8972.581160 C =10288.530488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.144 3.856 11 C -0.110 4.110 12 H 0.089 0.911 13 C -0.122 4.122 14 C 0.093 3.907 15 N -0.598 5.598 16 C 0.569 3.431 17 O -0.523 6.523 18 C -0.081 4.081 19 C -0.120 4.120 20 C -0.074 4.074 21 C -0.127 4.127 22 C 0.132 3.868 23 C -0.078 4.078 24 N -0.657 5.657 25 C 0.529 3.471 26 O -0.508 6.508 27 C -0.115 4.115 28 C 0.114 3.886 29 H 0.083 0.917 30 C 0.178 3.822 31 H 0.252 0.748 32 H 0.039 0.961 33 H 0.017 0.983 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.416 0.584 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.056 0.944 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.819 -15.806 -10.434 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.130 4.130 12 H 0.107 0.893 13 C -0.160 4.160 14 C -0.029 4.029 15 N -0.332 5.332 16 C 0.357 3.643 17 O -0.399 6.399 18 C -0.085 4.085 19 C -0.139 4.139 20 C -0.093 4.093 21 C -0.131 4.131 22 C 0.035 3.965 23 C -0.100 4.100 24 N -0.300 5.300 25 C 0.317 3.683 26 O -0.383 6.383 27 C -0.154 4.154 28 C 0.011 3.989 29 H 0.101 0.899 30 C 0.052 3.948 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.165 0.835 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.254 0.746 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.074 0.926 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.748 -15.065 -10.384 19.870 hybrid contribution 0.264 1.401 0.294 1.455 sum -7.484 -13.664 -10.089 18.561 Atomic orbital electron populations 1.70013 1.04765 1.24930 1.56424 1.24845 0.95689 0.97722 1.02047 0.86071 0.78683 0.83905 0.77240 1.20493 1.21822 1.21732 1.19048 0.90389 0.82230 1.44430 0.90304 1.44137 1.01407 1.00001 1.87363 1.21075 0.93870 0.85706 0.97558 1.22958 0.95482 0.98873 0.95689 0.89262 1.22793 0.94153 1.03225 0.95848 1.22683 0.93302 0.94863 0.92099 1.48421 1.10746 1.53963 1.20026 1.17736 0.80509 0.79119 0.86979 1.90830 1.70397 1.41304 1.37363 1.19655 0.96455 0.96523 0.95878 1.21810 1.00171 0.97900 0.94009 1.20187 0.93582 0.98490 0.97027 1.19976 0.99045 0.96843 0.97200 1.17935 0.90250 0.93099 0.95230 1.20408 0.94038 1.00678 0.94861 1.43735 1.31683 1.29426 1.25204 1.20585 0.83130 0.85078 0.79533 1.90824 1.28816 1.66872 1.51828 1.21091 0.96587 0.98528 0.99197 1.22932 0.87276 1.00111 0.88576 0.89904 1.21283 0.84237 0.87211 1.02023 0.93754 0.94287 0.96518 0.90366 0.89405 0.91378 0.90164 0.83458 0.84706 0.84201 0.74595 0.85680 0.85749 0.92600 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.44 10.23 55.49 0.57 -26.87 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.23 -6.41 10.25 -15.06 -0.15 -6.56 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.03 3.37 -172.28 -0.58 -15.61 16 10 C 0.14 2.79 6.50 -3.69 -0.02 2.76 16 11 C -0.11 -1.70 3.97 -88.22 -0.35 -2.05 16 12 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 13 C -0.12 -1.60 6.32 -24.76 -0.16 -1.76 16 14 C 0.09 1.10 5.00 -2.55 -0.01 1.09 16 15 N -0.60 -9.84 2.83 -162.90 -0.46 -10.30 16 16 C 0.57 10.06 7.33 -12.32 -0.09 9.97 16 17 O -0.52 -11.44 16.81 5.32 0.09 -11.35 16 18 C -0.08 -1.11 5.69 -105.06 -0.60 -1.71 16 19 C -0.12 -1.19 7.94 -39.12 -0.31 -1.50 16 20 C -0.07 -0.60 10.02 -39.78 -0.40 -0.99 16 21 C -0.13 -1.15 6.35 -104.23 -0.66 -1.81 16 22 C 0.13 1.44 7.10 -83.71 -0.59 0.84 16 23 C -0.08 -1.02 9.61 -38.86 -0.37 -1.40 16 24 N -0.66 -6.62 5.88 -9.72 -0.06 -6.68 16 25 C 0.53 5.61 8.71 -10.84 -0.09 5.51 16 26 O -0.51 -7.07 18.03 5.55 0.10 -6.97 16 27 C -0.12 -0.84 6.88 -28.46 -0.20 -1.04 16 28 C 0.11 2.14 3.79 -65.88 -0.25 1.89 16 29 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 30 C 0.18 4.39 4.70 -3.60 -0.02 4.37 16 31 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 36 H 0.07 0.60 7.22 -51.93 -0.37 0.22 16 37 H 0.08 0.86 6.22 -51.93 -0.32 0.54 16 38 H 0.15 1.20 4.54 -52.49 -0.24 0.96 16 39 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.14 1.95 7.86 -52.49 -0.41 1.53 16 41 H 0.42 3.62 8.96 -40.82 -0.37 3.26 16 42 H 0.13 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 1.57 6.88 -51.93 -0.36 1.21 16 45 H 0.04 1.30 7.51 -51.93 -0.39 0.91 16 LS Contribution 361.82 15.07 5.45 5.45 Total: -1.00 -35.84 361.82 -10.08 -45.92 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.79 Total: 1.87 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -4.38 Total: 7.36 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.53 Total: -59.46 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.19 Total: -18.32 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.84 -10.08 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075823551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.892 kcal (2) G-P(sol) polarization free energy of solvation -35.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds