Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00268 * 2 1 4 4 H 1.48503 * 109.47130 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47360 * 299.99968 * 3 2 1 6 6 H 1.48504 * 109.47057 * 59.99873 * 3 2 1 7 7 C 1.38816 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00042 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.46661 * 125.28451 * 179.97438 * 9 7 2 11 11 C 1.53515 * 107.04621 * 197.41630 * 10 9 7 12 12 H 1.09005 * 112.80250 * 211.54001 * 11 10 9 13 13 C 1.54789 * 109.68480 * 84.09230 * 11 10 9 14 14 C 1.54952 * 101.45155 * 212.91855 * 13 11 10 15 15 N 1.47351 * 104.89935 * 37.25425 * 14 13 11 16 16 C 1.34779 * 125.51895 * 156.77730 * 15 14 13 17 17 O 1.21555 * 119.99443 * 176.21004 * 16 15 14 18 18 C 1.47860 * 120.00239 * 356.20504 * 16 15 14 19 19 C 1.39611 * 119.96889 * 27.48291 * 18 16 15 20 20 C 1.38087 * 119.68404 * 179.97438 * 19 18 16 21 21 C 1.37854 * 120.10900 * 0.02873 * 20 19 18 22 22 C 1.39025 * 121.04342 * 359.96982 * 21 20 19 23 23 C 1.39129 * 119.08882 * 359.75169 * 22 21 20 24 24 N 1.39586 * 110.21049 * 180.02562 * 22 21 20 25 25 C 1.34354 * 112.25134 * 0.02562 * 24 22 21 26 26 O 1.21286 * 126.42567 * 179.97438 * 25 24 22 27 27 C 1.51191 * 132.65293 * 179.97438 * 21 20 19 28 28 C 1.47255 * 108.95334 * 336.73750 * 15 14 13 29 29 H 1.09004 * 111.94393 * 235.60850 * 28 15 14 30 30 C 1.46484 * 125.29223 * 0.02562 * 9 7 2 31 31 H 0.96998 * 119.99551 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.91473 * 316.76624 * 10 9 7 33 33 H 1.08995 * 109.91623 * 78.06118 * 10 9 7 34 34 H 1.08996 * 111.03005 * 94.87955 * 13 11 10 35 35 H 1.08994 * 111.02590 * 330.96007 * 13 11 10 36 36 H 1.09001 * 110.35438 * 278.40195 * 14 13 11 37 37 H 1.08998 * 110.35249 * 156.11048 * 14 13 11 38 38 H 1.07995 * 120.16051 * 0.02562 * 19 18 16 39 39 H 1.07998 * 119.95079 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.99290 * 180.27019 * 23 22 21 41 41 H 0.97003 * 123.87589 * 179.97438 * 24 22 21 42 42 H 1.08993 * 110.50576 * 298.64757 * 27 21 20 43 43 H 1.09005 * 110.50412 * 61.34899 * 27 21 20 44 44 H 1.08993 * 109.71571 * 58.27992 * 30 9 7 45 45 H 1.09003 * 109.67400 * 297.70676 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 1.9385 -3.7204 0.0005 11 6 0.8544 -4.7146 -0.4388 12 1 0.9730 -5.6976 0.0170 13 6 0.7823 -4.7581 -1.9844 14 6 -0.7267 -5.0244 -2.2146 15 7 -1.4126 -4.2473 -1.1673 16 6 -2.6878 -3.8143 -1.2221 17 8 -3.1755 -3.2384 -0.2692 18 6 -3.4934 -4.0397 -2.4413 19 6 -3.2134 -5.1270 -3.2711 20 6 -3.9698 -5.3322 -4.4080 21 6 -4.9959 -4.4666 -4.7215 22 6 -5.2898 -3.3785 -3.9076 23 6 -4.5347 -3.1703 -2.7578 24 7 -6.3635 -2.6585 -4.4343 25 6 -6.8271 -3.1974 -5.5743 26 8 -7.7492 -2.7825 -6.2442 27 6 -5.9823 -4.4190 -5.8663 28 6 -0.4795 -4.0213 -0.0508 29 1 -0.8832 -4.3791 0.8963 30 6 -0.1332 -2.5230 -0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 2.7719 -3.7456 -0.7014 33 1 2.2863 -3.9691 1.0031 34 1 1.3882 -5.5726 -2.3814 35 1 1.0814 -3.8034 -2.4169 36 1 -0.9456 -6.0864 -2.1033 37 1 -1.0266 -4.6762 -3.2029 38 1 -2.4096 -5.8048 -3.0246 39 1 -3.7573 -6.1722 -5.0527 40 1 -4.7532 -2.3321 -2.1128 41 1 -6.7330 -1.8610 -4.0238 42 1 -5.4597 -4.3048 -6.8160 43 1 -6.6007 -5.3167 -5.8751 44 1 -0.5483 -2.0201 -0.8738 45 1 -0.5433 -2.0812 0.9077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075823551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = -7.285203 kcal Electronic energy + Delta-G solvation = -29707.956561 eV Core-core repulsion = 25690.728306 eV Total energy + Delta-G solvation = -4017.228255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.53963 -41.60102 -39.81548 -38.92222 -36.91385 -36.44782 -34.12607 -33.33706 -32.22066 -31.08803 -30.37700 -29.32937 -28.18689 -26.46857 -24.74507 -23.86267 -22.82211 -22.52978 -22.15672 -20.99516 -20.32950 -19.21139 -18.84634 -18.17619 -17.33580 -17.22814 -17.08916 -16.85146 -16.41506 -16.02715 -15.73430 -15.56848 -15.24252 -15.07965 -14.94817 -14.56323 -14.33644 -14.24416 -14.04791 -13.69872 -13.50655 -13.41601 -13.24855 -12.94930 -12.91554 -12.75157 -12.52215 -12.25756 -12.06236 -12.00666 -11.87353 -11.64727 -11.47548 -11.40506 -11.37872 -10.99022 -10.73704 -9.98309 -9.59934 -9.16037 -8.90583 -7.85666 -5.24302 -0.22698 0.14958 1.31916 1.40986 1.42869 1.53449 1.65816 1.91075 2.09253 2.46723 2.75494 3.05681 3.29577 3.31788 3.41995 3.64434 3.70482 3.79300 3.80931 4.03843 4.13856 4.19808 4.26575 4.34630 4.45160 4.53727 4.54658 4.59177 4.72626 4.79743 4.81360 4.88506 4.92886 5.00440 5.14175 5.21055 5.23961 5.25560 5.30186 5.45209 5.49590 5.55050 5.60985 5.65930 5.79227 5.88994 6.17850 6.56704 6.83331 7.05579 7.14324 7.78061 8.38534 9.22378 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013269 B = 0.003120 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.703811 B = 8972.581160 C =10288.530488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.073 4.073 3 Si 0.978 3.022 4 H -0.256 1.256 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.623 5.623 10 C 0.134 3.866 11 C -0.090 4.090 12 H 0.139 0.861 13 C -0.116 4.116 14 C 0.088 3.912 15 N -0.600 5.600 16 C 0.557 3.443 17 O -0.589 6.589 18 C -0.106 4.106 19 C -0.105 4.105 20 C -0.054 4.054 21 C -0.112 4.112 22 C 0.119 3.881 23 C -0.103 4.103 24 N -0.660 5.660 25 C 0.522 3.478 26 O -0.549 6.549 27 C -0.102 4.102 28 C 0.117 3.883 29 H 0.075 0.925 30 C 0.199 3.801 31 H 0.240 0.760 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.131 0.869 35 H 0.047 0.953 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.176 0.824 39 H 0.188 0.812 40 H 0.107 0.893 41 H 0.415 0.585 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.009 0.991 45 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 -20.661 -13.700 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.266 4.266 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.366 4.366 8 H 0.109 0.891 9 N -0.349 5.349 10 C 0.009 3.991 11 C -0.109 4.109 12 H 0.157 0.843 13 C -0.153 4.153 14 C -0.032 4.032 15 N -0.331 5.331 16 C 0.348 3.652 17 O -0.470 6.470 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.072 4.072 21 C -0.115 4.115 22 C 0.022 3.978 23 C -0.125 4.125 24 N -0.302 5.302 25 C 0.312 3.688 26 O -0.427 6.427 27 C -0.140 4.140 28 C 0.012 3.988 29 H 0.093 0.907 30 C 0.073 3.927 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.149 0.851 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.114 0.886 38 H 0.193 0.807 39 H 0.205 0.795 40 H 0.125 0.875 41 H 0.253 0.747 42 H 0.172 0.828 43 H 0.174 0.826 44 H 0.028 0.972 45 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -5.721 -19.990 -13.673 24.885 hybrid contribution -0.315 2.917 1.345 3.228 sum -6.036 -17.072 -12.328 21.906 Atomic orbital electron populations 1.70325 1.06632 1.24739 1.58544 1.25764 0.96432 1.01497 1.02874 0.85001 0.78565 0.79349 0.76404 1.18002 1.22191 1.22479 1.19539 0.91162 0.83486 1.42380 0.89097 1.44449 1.01764 1.01798 1.86927 1.21391 0.95542 0.83834 0.98319 1.23037 0.90661 0.99291 0.97904 0.84318 1.22812 0.95811 1.03227 0.93484 1.23144 0.91808 0.96966 0.91299 1.48514 1.10138 1.53945 1.20511 1.18562 0.81122 0.77910 0.87650 1.90780 1.72021 1.44227 1.39988 1.19419 0.96931 0.99093 0.95552 1.22094 1.00695 0.96191 0.93437 1.20685 0.91492 0.98845 0.96188 1.20375 0.99033 0.95429 0.96681 1.17932 0.90423 0.94362 0.95045 1.20238 0.95561 1.00671 0.96001 1.43883 1.31506 1.29489 1.25352 1.21225 0.82845 0.85895 0.78836 1.90804 1.30722 1.68251 1.52906 1.21198 0.95816 0.97605 0.99358 1.22654 0.90119 0.96049 0.89971 0.90732 1.20797 0.84110 0.91086 0.96726 0.95038 0.92667 0.96005 0.85102 0.93403 0.86054 0.88607 0.80699 0.79465 0.87465 0.74720 0.82787 0.82574 0.97236 1.00258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.01 10.23 21.65 0.22 -61.79 16 2 C -0.07 -4.35 5.48 84.86 0.47 -3.89 16 3 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 7 C -0.24 -13.43 10.25 84.03 0.86 -12.57 16 8 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 9 N -0.62 -32.24 3.37 -698.97 -2.36 -34.60 16 10 C 0.13 4.99 6.50 86.52 0.56 5.55 16 11 C -0.09 -2.49 3.97 -9.24 -0.04 -2.52 16 12 H 0.14 2.63 8.14 -2.38 -0.02 2.61 16 13 C -0.12 -2.54 6.32 31.87 0.20 -2.33 16 14 C 0.09 1.71 5.00 86.88 0.43 2.14 16 15 N -0.60 -19.65 2.83 -787.57 -2.23 -21.88 16 16 C 0.56 20.95 7.33 86.79 0.64 21.58 16 17 O -0.59 -28.85 16.81 -3.89 -0.07 -28.91 16 18 C -0.11 -2.93 5.69 -20.15 -0.11 -3.05 16 19 C -0.11 -1.67 7.94 22.57 0.18 -1.49 16 20 C -0.05 -0.55 10.02 22.14 0.22 -0.33 16 21 C -0.11 -1.58 6.35 -19.61 -0.12 -1.71 16 22 C 0.12 2.57 7.10 38.31 0.27 2.84 16 23 C -0.10 -2.91 9.61 22.74 0.22 -2.69 16 24 N -0.66 -13.58 5.88 -303.30 -1.78 -15.37 16 25 C 0.52 10.42 8.71 87.94 0.77 11.18 16 26 O -0.55 -15.06 18.03 -3.05 -0.05 -15.12 16 27 C -0.10 -1.05 6.88 29.47 0.20 -0.84 16 28 C 0.12 4.47 3.79 45.91 0.17 4.64 16 29 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 30 C 0.20 10.64 4.70 86.67 0.41 11.04 16 31 H 0.24 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.06 1.90 7.95 -2.39 -0.02 1.88 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.13 1.59 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.46 7.93 -2.39 -0.02 1.44 16 36 H 0.12 1.20 7.22 -2.39 -0.02 1.18 16 37 H 0.10 1.62 6.22 -2.39 -0.01 1.60 16 38 H 0.18 1.73 4.54 -2.91 -0.01 1.71 16 39 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 40 H 0.11 3.59 7.86 -2.91 -0.02 3.57 16 41 H 0.41 8.08 8.96 -92.71 -0.83 7.25 16 42 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.16 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.01 0.58 6.88 -2.39 -0.02 0.57 16 45 H -0.02 -1.35 7.51 -2.39 -0.02 -1.37 16 Total: -1.00 -93.18 361.82 1.30 -91.87 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.22 Total: 8.68 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 5.33 Total: 27.56 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -6.15 Total: -133.63 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.12 Total: -44.03 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -93.18 1.30 -91.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075823551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.589 kcal (2) G-P(sol) polarization free energy of solvation -93.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds