Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99786 * 2 1 4 4 H 1.48501 * 109.47191 * 240.00167 * 3 2 1 5 5 H 1.48510 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47355 * 119.99626 * 3 2 1 7 7 C 1.38803 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00115 * 0.02562 * 7 2 1 10 10 C 1.47429 * 125.64764 * 0.03620 * 9 7 2 11 11 C 1.55119 * 104.94198 * 203.97190 * 10 9 7 12 12 H 1.09002 * 110.94049 * 81.21965 * 11 10 9 13 13 O 1.42902 * 111.15909 * 205.12992 * 11 10 9 14 14 C 1.55150 * 101.48753 * 323.22149 * 11 10 9 15 15 H 1.09006 * 110.72425 * 276.83357 * 14 11 10 16 16 N 1.46503 * 110.72134 * 153.73705 * 14 11 10 17 17 C 1.34777 * 120.00023 * 157.44560 * 16 14 11 18 18 O 1.21280 * 119.99942 * 359.97438 * 17 16 14 19 19 C 1.50704 * 120.00019 * 180.02562 * 17 16 14 20 20 C 1.50701 * 109.46932 * 179.97438 * 19 17 16 21 21 C 1.39355 * 119.46586 * 90.00215 * 20 19 17 22 22 C 1.36134 * 120.86958 * 179.72080 * 21 20 19 23 23 C 1.40435 * 119.61152 * 359.97438 * 22 21 20 24 24 C 1.40772 * 121.37686 * 179.97438 * 23 22 21 25 25 C 1.36566 * 118.15293 * 180.02562 * 24 23 22 26 26 C 1.39335 * 119.93598 * 359.96210 * 25 24 23 27 27 N 1.31083 * 121.74594 * 0.03591 * 26 25 24 28 28 C 1.33679 * 121.32399 * 359.97438 * 27 26 25 29 29 C 1.36082 * 119.46311 * 269.72423 * 20 19 17 30 30 C 1.47024 * 125.65045 * 180.02562 * 9 7 2 31 31 H 0.97000 * 120.00200 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.36679 * 322.93409 * 10 9 7 33 33 H 1.09001 * 110.36726 * 85.14463 * 10 9 7 34 34 H 0.96695 * 114.00348 * 292.16443 * 13 11 10 35 35 H 0.96999 * 119.99974 * 337.44271 * 16 14 11 36 36 H 1.09005 * 109.46854 * 59.99683 * 19 17 16 37 37 H 1.08995 * 109.46541 * 299.99565 * 19 17 16 38 38 H 1.07997 * 119.56506 * 359.73491 * 21 20 19 39 39 H 1.07992 * 120.19875 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.92218 * 0.02562 * 24 23 22 41 41 H 1.08003 * 120.03676 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.12780 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.12853 * 0.26192 * 29 20 19 44 44 H 1.09000 * 109.88321 * 59.55823 * 30 9 7 45 45 H 1.08994 * 110.00879 * 298.45889 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7466 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1414 -2.5332 -0.0008 11 6 -0.4052 -3.9351 0.6087 12 1 -0.3595 -3.9015 1.6972 13 8 -1.6577 -4.4623 0.1667 14 6 0.7785 -4.7524 0.0273 15 1 0.5491 -5.1005 -0.9799 16 7 1.1079 -5.8811 0.9013 17 6 1.7584 -6.9514 0.4035 18 8 2.0706 -6.9804 -0.7680 19 6 2.0966 -8.1127 1.3025 20 6 2.8165 -9.1708 0.5067 21 6 4.2066 -9.1329 0.4157 22 6 4.8863 -10.0774 -0.2909 23 6 4.1783 -11.1042 -0.9364 24 6 4.8434 -12.0995 -1.6772 25 6 4.0898 -13.0668 -2.2786 26 6 2.7027 -13.0491 -2.1480 27 7 2.0868 -12.1207 -1.4573 28 6 2.7651 -11.1455 -0.8442 29 6 2.0990 -10.1511 -0.1066 30 6 1.9320 -3.7274 0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5998 -1.7588 0.6143 33 1 -0.5265 -2.4850 -1.0193 34 1 -2.4271 -3.9839 0.5046 35 1 0.8578 -5.8581 1.8382 36 1 1.1791 -8.5311 1.7163 37 1 2.7377 -7.7690 2.1142 38 1 4.7518 -8.3440 0.9123 39 1 5.9636 -10.0379 -0.3539 40 1 5.9196 -12.0982 -1.7675 41 1 4.5686 -13.8448 -2.8547 42 1 2.1196 -13.8206 -2.6287 43 1 1.0221 -10.1660 -0.0257 44 1 2.5573 -3.8506 0.8859 45 1 2.5311 -3.8663 -0.8983 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077213119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = -25.663574 kcal Electronic energy + Delta-G solvation = -28385.397514 eV Core-core repulsion = 24367.372313 eV Total energy + Delta-G solvation = -4018.025201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.82679 -41.00386 -39.49090 -38.10405 -36.69968 -35.54709 -34.61519 -33.70941 -32.91477 -31.07952 -30.39628 -29.22592 -28.22162 -26.31476 -25.01412 -23.97961 -23.07694 -22.50803 -21.90097 -21.37589 -19.15263 -18.80682 -18.52533 -18.04809 -17.85245 -17.75814 -17.25324 -16.53005 -16.23602 -15.67000 -15.50874 -15.42041 -15.32744 -15.15139 -14.85513 -14.81232 -14.59324 -14.02920 -13.90160 -13.85525 -13.73737 -13.22295 -13.18340 -12.99577 -12.77843 -12.70232 -12.59757 -12.42229 -12.27322 -12.10989 -11.93223 -11.49839 -11.43742 -11.18263 -10.82585 -10.76109 -10.44425 -10.16112 -9.63346 -9.19466 -8.98617 -7.82716 -5.29409 -0.52087 -0.14965 1.05015 1.46750 1.50141 1.56357 1.64393 1.85442 2.25680 2.47292 3.07651 3.15005 3.28700 3.31781 3.61099 3.63389 3.69267 3.79498 3.91688 3.98816 4.04872 4.07758 4.12349 4.19962 4.23430 4.33761 4.42611 4.56967 4.59677 4.61588 4.63660 4.83485 4.87299 4.95730 5.04664 5.07748 5.15867 5.36172 5.40996 5.42815 5.47159 5.51347 5.63666 5.66917 5.92320 6.20165 6.56742 6.86215 6.97544 7.03631 7.27881 7.67992 8.30304 9.18825 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020810 B = 0.002120 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.161922 B =13206.568531 C =13927.148845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.984 3.016 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.619 5.619 10 C 0.133 3.867 11 C 0.092 3.908 12 H 0.092 0.908 13 O -0.569 6.569 14 C 0.156 3.844 15 H 0.069 0.931 16 N -0.702 5.702 17 C 0.512 3.488 18 O -0.582 6.582 19 C -0.094 4.094 20 C -0.049 4.049 21 C -0.113 4.113 22 C -0.097 4.097 23 C -0.125 4.125 24 C -0.060 4.060 25 C -0.176 4.176 26 C 0.120 3.880 27 N -0.514 5.514 28 C 0.099 3.901 29 C -0.106 4.106 30 C 0.133 3.867 31 H 0.251 0.749 32 H 0.092 0.908 33 H -0.013 1.013 34 H 0.397 0.603 35 H 0.419 0.581 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.174 0.826 42 H 0.184 0.816 43 H 0.127 0.873 44 H 0.046 0.954 45 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -25.593 5.409 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.255 4.255 3 Si 0.812 3.188 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.347 5.347 10 C 0.007 3.993 11 C 0.031 3.969 12 H 0.109 0.891 13 O -0.377 6.377 14 C 0.049 3.951 15 H 0.087 0.913 16 N -0.355 5.355 17 C 0.300 3.700 18 O -0.461 6.461 19 C -0.133 4.133 20 C -0.051 4.051 21 C -0.131 4.131 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.086 4.086 25 C -0.196 4.196 26 C -0.052 4.052 27 N -0.223 5.223 28 C -0.021 4.021 29 C -0.125 4.125 30 C 0.006 3.994 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.005 0.995 34 H 0.247 0.753 35 H 0.256 0.744 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.177 0.823 40 H 0.187 0.813 41 H 0.191 0.809 42 H 0.201 0.799 43 H 0.145 0.855 44 H 0.064 0.936 45 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 6.879 -25.742 4.427 27.010 hybrid contribution 0.446 1.639 -0.043 1.699 sum 7.325 -24.103 4.384 25.570 Atomic orbital electron populations 1.69954 1.06137 1.25478 1.58057 1.25656 0.96749 1.01012 1.02124 0.85073 0.77144 0.78384 0.78224 1.20905 1.21671 1.19734 1.19407 0.91066 0.83371 1.43451 0.90069 1.44550 1.02395 1.00650 1.87109 1.22414 0.84653 0.94856 0.97426 1.23292 0.83280 0.92422 0.97896 0.89054 1.86393 1.15802 1.58748 1.76715 1.21483 0.93126 0.85734 0.94717 0.91279 1.45765 1.58917 1.16903 1.13872 1.21228 0.76428 0.83765 0.88550 1.90735 1.54328 1.81375 1.19695 1.20817 1.04293 0.90738 0.97493 1.19265 0.94198 0.94424 0.97228 1.21112 0.93426 0.99191 0.99396 1.21298 1.01211 0.93174 0.95892 1.19188 0.93873 0.98599 1.01020 1.21915 1.02072 0.91759 0.92841 1.22273 0.94798 1.00978 1.01511 1.23582 0.93719 0.95085 0.92823 1.68014 1.41090 1.03611 1.09614 1.19089 0.90855 0.94751 0.97432 1.20724 1.00153 0.94161 0.97468 1.21669 0.94670 0.84636 0.98421 0.93966 0.89041 0.99504 0.75260 0.74358 0.84930 0.83909 0.83596 0.82307 0.81283 0.80882 0.79866 0.85518 0.93635 0.97179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.97 10.09 21.65 0.22 -54.75 16 2 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 3 Si 0.98 44.94 29.55 68.60 2.03 46.96 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.24 -13.69 10.27 84.03 0.86 -12.83 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.62 -32.22 3.40 -691.57 -2.35 -34.57 16 10 C 0.13 6.45 5.63 86.93 0.49 6.94 16 11 C 0.09 3.33 4.06 32.06 0.13 3.46 16 12 H 0.09 2.84 8.00 -2.39 -0.02 2.82 16 13 O -0.57 -18.80 13.48 -148.98 -2.01 -20.81 16 14 C 0.16 5.86 3.00 46.18 0.14 6.00 16 15 H 0.07 3.06 7.62 -2.38 -0.02 3.04 16 16 N -0.70 -19.25 5.12 -436.91 -2.23 -21.48 16 17 C 0.51 14.58 7.82 87.66 0.69 15.27 16 18 O -0.58 -22.96 15.72 -3.03 -0.05 -23.01 16 19 C -0.09 -1.68 5.80 29.10 0.17 -1.51 16 20 C -0.05 -1.11 4.34 -20.10 -0.09 -1.20 16 21 C -0.11 -2.31 9.59 22.05 0.21 -2.10 16 22 C -0.10 -1.85 9.78 22.32 0.22 -1.63 16 23 C -0.12 -2.74 5.74 -21.27 -0.12 -2.86 16 24 C -0.06 -0.91 9.90 22.50 0.22 -0.69 16 25 C -0.18 -2.33 10.03 22.14 0.22 -2.11 16 26 C 0.12 2.14 11.15 85.07 0.95 3.09 16 27 N -0.51 -13.43 10.34 -188.63 -1.95 -15.39 16 28 C 0.10 2.66 6.60 40.29 0.27 2.93 16 29 C -0.11 -2.80 9.58 22.34 0.21 -2.59 16 30 C 0.13 5.81 7.00 86.73 0.61 6.42 16 31 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.09 4.85 5.87 -2.39 -0.01 4.83 16 33 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.40 9.63 9.12 -74.06 -0.68 8.96 16 35 H 0.42 8.12 8.54 -92.71 -0.79 7.33 16 36 H 0.13 1.68 8.06 -2.38 -0.02 1.66 16 37 H 0.14 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.17 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.18 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 44 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -83.04 378.88 -1.13 -84.17 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.43 Total: 25.32 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.64 Total: 13.55 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -6.32 Total: -126.19 kcal Atomic # 8 Polarization: -41.76 SS G_CDS: -2.06 Total: -43.81 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -83.04 -1.13 -84.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077213119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.506 kcal (2) G-P(sol) polarization free energy of solvation -83.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds