Wall clock time and date at job start Sat Apr 11 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 H 1.08995 * 109.47186 * 304.99907 * 5 4 2 7 7 C 1.53000 * 109.47009 * 184.99952 * 5 4 2 8 8 N 1.46500 * 109.47156 * 65.00411 * 5 4 2 9 9 C 1.38991 * 119.99973 * 205.00044 * 8 5 4 10 10 C 1.39068 * 119.69330 * 359.72223 * 9 8 5 11 11 C 1.38375 * 119.16202 * 179.79448 * 10 9 8 12 12 C 1.38760 * 118.53067 * 0.47505 * 11 10 9 13 13 C 1.38372 * 119.30719 * 359.74590 * 12 11 10 14 14 F 1.35100 * 119.60447 * 180.02562 * 13 12 11 15 15 N 1.32135 * 120.79227 * 0.02562 * 13 12 11 16 16 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 17 17 C 1.34777 * 119.99525 * 84.99977 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 33 33 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 34 34 H 1.09000 * 109.47748 * 300.00292 * 7 5 4 35 35 H 1.09001 * 109.46905 * 60.00192 * 7 5 4 36 36 H 1.09004 * 109.47188 * 179.97438 * 7 5 4 37 37 H 0.97004 * 119.99552 * 24.99689 * 8 5 4 38 38 H 1.08004 * 120.41672 * 0.02562 * 10 9 8 39 39 H 1.07999 * 120.73274 * 180.22267 * 11 10 9 40 40 H 1.08004 * 120.34579 * 179.76939 * 12 11 10 41 41 H 0.97000 * 120.00580 * 265.00723 * 16 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 43 43 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 44 44 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 1 3.9954 -0.9923 0.3871 7 6 4.0851 -1.4380 2.4928 8 7 3.9480 0.7895 1.4925 9 6 5.1992 1.2269 1.0741 10 6 6.0845 0.3262 0.4918 11 6 7.3256 0.7744 0.0753 12 6 7.6453 2.1113 0.2647 13 6 6.7186 2.9523 0.8552 14 9 7.0233 4.2552 1.0419 15 7 5.5392 2.4964 1.2386 16 7 2.0185 -0.6908 -1.1960 17 6 2.1472 -0.0185 -2.3570 18 8 1.8591 1.1584 -2.4116 19 6 2.6554 -0.7275 -3.5859 20 16 2.7226 0.4369 -4.9699 21 6 3.3326 -0.6266 -6.2353 22 1 3.5410 -1.6633 -6.0155 23 6 3.5443 -0.1325 -7.5150 24 7 3.2888 1.1306 -7.7834 25 14 4.1903 -1.2601 -8.8567 26 1 3.0483 -1.8974 -9.5601 27 1 4.9895 -0.4687 -9.8263 28 1 5.0467 -2.3109 -8.2503 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 1.6053 -0.2615 2.1370 33 1 1.7516 -1.7714 1.2059 34 1 3.6545 -1.0590 3.4196 35 1 3.8000 -2.4817 2.3598 36 1 5.1715 -1.3615 2.5384 37 1 3.3284 1.4130 1.9028 38 1 5.8054 -0.7091 0.3630 39 1 8.0315 0.0977 -0.3832 40 1 8.6073 2.4917 -0.0460 41 1 2.2491 -1.6319 -1.1524 42 1 3.6539 -1.1197 -3.3923 43 1 1.9842 -1.5494 -3.8349 44 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089250267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:35 Heat of formation + Delta-G solvation = -47.916120 kcal Electronic energy + Delta-G solvation = -27124.608537 eV Core-core repulsion = 23117.602040 eV Total energy + Delta-G solvation = -4007.006497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.01931 -40.43355 -39.47762 -37.61933 -35.16082 -32.96363 -32.43352 -32.02020 -31.03202 -28.95899 -28.56506 -27.08722 -25.48767 -23.83072 -23.36119 -21.93659 -21.00110 -20.30758 -18.43532 -17.88340 -17.65881 -16.51601 -16.34034 -16.13759 -16.10046 -15.73859 -15.48575 -14.88611 -14.80800 -14.30894 -14.25618 -14.04155 -13.62295 -13.45763 -13.22575 -13.19661 -13.00993 -12.76088 -12.66995 -12.49515 -12.40359 -12.15821 -11.95646 -11.60089 -11.24258 -11.07119 -11.03444 -11.01567 -10.76647 -10.45405 -9.82991 -9.82044 -9.75317 -9.38056 -9.07612 -8.92103 -8.23312 -7.94107 -6.50143 -6.21938 -3.92557 0.99064 1.22292 2.66740 3.02824 3.10426 3.21497 3.27310 3.31107 3.62361 3.70175 3.82068 4.19452 4.20136 4.45918 4.52583 4.70114 4.75438 4.97874 5.01820 5.05694 5.08649 5.13148 5.17737 5.20414 5.31104 5.41268 5.44572 5.56265 5.58224 5.60314 5.66985 5.72427 5.80619 5.86960 6.01266 6.07916 6.11428 6.16856 6.36386 6.64611 6.76321 7.25022 7.58650 7.69757 7.80991 8.34434 8.62716 9.23215 10.85461 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009111 B = 0.003251 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3072.589627 B = 8610.976560 C =10390.499960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.134 4.134 5 C 0.149 3.851 6 H 0.088 0.912 7 C -0.170 4.170 8 N -0.712 5.712 9 C 0.445 3.555 10 C -0.249 4.249 11 C -0.005 4.005 12 C -0.256 4.256 13 C 0.356 3.644 14 F -0.115 7.115 15 N -0.577 5.577 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.514 6.514 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.405 0.595 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.395 0.605 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -7.642 22.996 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.044 3.956 6 H 0.106 0.894 7 C -0.229 4.229 8 N -0.344 5.344 9 C 0.208 3.792 10 C -0.274 4.274 11 C -0.031 4.031 12 C -0.280 4.280 13 C 0.202 3.798 14 F -0.094 7.094 15 N -0.301 5.301 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.388 6.388 19 C -0.304 4.304 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.241 0.759 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.229 0.771 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.019 -5.101 23.120 23.762 hybrid contribution 1.152 -2.495 -1.013 2.929 sum 3.171 -7.597 22.107 23.590 Atomic orbital electron populations 1.22186 0.95321 1.02015 1.02730 1.20886 0.93934 0.97960 0.83589 0.89153 1.22225 0.93998 1.02503 0.98552 1.21069 0.94950 0.80479 0.99145 0.89404 1.22317 1.02019 0.99966 0.98562 1.44600 1.13669 1.10218 1.65938 1.17743 0.86351 0.86643 0.88447 1.21439 0.95784 1.01221 1.08913 1.21197 0.95268 0.94419 0.92187 1.21481 1.02156 0.94807 1.09526 1.17634 0.89163 0.79198 0.93832 1.91617 1.91946 1.33071 1.92725 1.66186 1.19848 1.16337 1.27752 1.46083 1.69599 1.13661 1.09574 1.20292 0.76888 0.87231 0.83748 1.90712 1.48079 1.15705 1.84270 1.23528 1.03454 1.04862 0.98548 1.85445 1.86057 1.12810 0.98961 1.22861 1.50876 0.98131 0.96567 0.90986 1.24986 0.95112 0.95501 0.97926 1.70020 1.45488 1.13184 1.21545 0.86181 0.78846 0.79961 0.80589 1.20277 1.20735 1.19695 0.92551 0.91990 0.91594 0.89675 0.89414 0.92060 0.91296 0.92008 0.75885 0.84413 0.83848 0.83925 0.77124 0.89430 0.89353 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.14 1.45 2.52 -67.93 -0.17 1.28 16 3 H 0.09 1.21 7.06 -51.93 -0.37 0.84 16 4 C -0.13 -0.83 4.29 -26.73 -0.11 -0.94 16 5 C 0.15 1.05 2.20 -67.93 -0.15 0.90 16 6 H 0.09 0.69 5.94 -51.93 -0.31 0.38 16 7 C -0.17 -0.93 9.40 37.16 0.35 -0.58 16 8 N -0.71 -6.88 4.62 -53.94 -0.25 -7.13 16 9 C 0.44 5.48 7.63 -155.01 -1.18 4.30 16 10 C -0.25 -2.67 8.82 -39.22 -0.35 -3.02 16 11 C -0.01 -0.05 10.16 -39.34 -0.40 -0.45 16 12 C -0.26 -2.91 10.08 -39.34 -0.40 -3.30 16 13 C 0.36 4.93 8.41 -17.37 -0.15 4.79 16 14 F -0.11 -1.61 17.29 2.25 0.04 -1.57 16 15 N -0.58 -8.40 10.40 -12.78 -0.13 -8.53 16 16 N -0.73 -8.78 4.45 -53.80 -0.24 -9.02 16 17 C 0.53 9.58 7.81 -10.98 -0.09 9.49 16 18 O -0.51 -11.58 15.52 5.55 0.09 -11.49 16 19 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 22 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 25 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.39 7.63 -51.93 -0.40 -0.01 16 37 H 0.41 3.81 8.73 -40.82 -0.36 3.45 16 38 H 0.14 1.18 6.05 -52.48 -0.32 0.87 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 41 H 0.40 3.48 8.60 -40.82 -0.35 3.13 16 42 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 43 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 388.40 15.07 5.85 5.85 Total: -1.00 -36.20 388.40 -9.31 -45.50 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.29 Total: 3.91 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.87 Total: -4.51 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.11 Total: -50.14 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.20 -9.31 -45.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089250267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.414 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds