Wall clock time and date at job start Sat Apr 11 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46492 * 109.47664 * 2 1 4 4 C 1.46500 * 119.99870 * 89.99738 * 3 2 1 5 5 C 1.50696 * 109.47324 * 90.00240 * 4 3 2 6 6 H 1.07999 * 119.99822 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00126 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99707 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99956 * 0.27447 * 7 5 4 10 10 H 1.48503 * 109.47407 * 269.72718 * 9 7 5 11 11 H 1.48505 * 109.47281 * 29.72474 * 9 7 5 12 12 H 1.48501 * 109.47274 * 149.72572 * 9 7 5 13 13 C 1.34779 * 120.00411 * 270.00158 * 3 2 1 14 14 O 1.21276 * 120.00085 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99712 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.47411 * 180.02562 * 15 13 3 17 17 C 1.34230 * 117.00225 * 180.02562 * 16 15 13 18 18 O 1.20825 * 119.99783 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99678 * 179.97438 * 17 16 15 20 20 C 1.53001 * 109.46936 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47172 * 179.97438 * 20 19 17 22 22 H 1.08994 * 110.53622 * 302.17633 * 21 20 19 23 23 N 1.47314 * 110.59599 * 65.00846 * 21 20 19 24 24 C 1.34520 * 106.62155 * 118.52569 * 23 21 20 25 25 O 1.21541 * 123.77210 * 180.02562 * 24 23 21 26 26 N 1.33789 * 112.45839 * 359.97438 * 24 23 21 27 27 C 1.34771 * 111.64494 * 0.02562 * 26 24 23 28 28 O 1.21235 * 127.15424 * 180.02562 * 27 26 24 29 29 H 1.08991 * 109.47133 * 300.00440 * 1 2 3 30 30 H 1.09001 * 109.46880 * 60.00007 * 1 2 3 31 31 H 1.08994 * 109.47297 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47047 * 239.99522 * 2 1 3 33 33 H 1.08998 * 109.47041 * 120.00486 * 2 1 3 34 34 H 1.08996 * 109.47197 * 329.99979 * 4 3 2 35 35 H 1.09004 * 109.46923 * 210.00675 * 4 3 2 36 36 H 0.97005 * 119.99656 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47470 * 300.00238 * 15 13 3 38 38 H 1.09004 * 109.47244 * 60.00025 * 15 13 3 39 39 H 1.08993 * 109.47544 * 299.99573 * 19 17 16 40 40 H 1.09002 * 109.47229 * 59.99871 * 19 17 16 41 41 H 1.08999 * 109.47524 * 300.00270 * 20 19 17 42 42 H 1.09002 * 109.46815 * 60.00170 * 20 19 17 43 43 H 0.97003 * 126.68916 * 298.48337 * 23 21 20 44 44 H 0.97004 * 124.17786 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 1.2687 5 6 3.6858 1.8348 1.7039 6 1 4.3429 1.2307 1.0959 7 6 4.1491 2.3894 2.8782 8 7 5.3913 2.1831 3.2575 9 14 3.0104 3.4280 3.9336 10 1 3.1116 4.8505 3.5193 11 1 1.6115 2.9605 3.7605 12 1 3.4026 3.2988 5.3600 13 6 2.2431 2.0165 -1.1672 14 8 2.6470 3.1600 -1.1671 15 6 1.9924 1.3060 -2.4723 16 8 2.3074 2.1954 -3.5759 17 6 2.1364 1.7117 -4.8163 18 8 1.7370 0.5824 -4.9746 19 6 2.4423 2.5772 -6.0113 20 6 2.1651 1.7914 -7.2946 21 6 2.4752 2.6704 -8.5079 22 1 1.8813 3.5840 -8.4800 23 7 3.9126 2.9880 -8.5640 24 6 4.3760 2.4721 -9.7166 25 8 5.5337 2.5556 -10.0770 26 7 3.4203 1.8558 -10.4214 27 6 2.2282 1.9087 -9.7949 28 8 1.1773 1.4431 -10.1803 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 1.5817 1.6876 2.0283 35 1 2.0956 3.1409 1.1384 36 1 5.7174 2.5735 4.0835 37 1 2.6228 0.4187 -2.5299 38 1 0.9445 1.0115 -2.5302 39 1 1.8129 3.4667 -5.9865 40 1 3.4911 2.8735 -5.9865 41 1 2.7948 0.9021 -7.3193 42 1 1.1165 1.4949 -7.3196 43 1 4.4249 3.4749 -7.8996 44 1 3.5671 1.4248 -11.2780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323932311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:52 Heat of formation + Delta-G solvation = -194.872265 kcal Electronic energy + Delta-G solvation = -29014.483215 eV Core-core repulsion = 24545.978561 eV Total energy + Delta-G solvation = -4468.504654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.38279 -41.75325 -40.60594 -39.72870 -37.89637 -37.43369 -37.00060 -35.67898 -34.87787 -33.35932 -32.05496 -30.84454 -29.40948 -28.36996 -25.14129 -24.45920 -24.05028 -23.66222 -22.44172 -21.62504 -20.21636 -19.42041 -19.13043 -18.95711 -18.13424 -18.07662 -17.77188 -17.60500 -17.41970 -16.96273 -16.69390 -16.54455 -16.30970 -15.99961 -15.44745 -15.29111 -15.03396 -14.77530 -14.60675 -14.30390 -14.09677 -13.81346 -13.76180 -13.62124 -13.38192 -13.16307 -13.02461 -12.56269 -12.41915 -12.24299 -12.13303 -12.08607 -12.01079 -11.76082 -11.73771 -11.68305 -11.49448 -11.35984 -10.82984 -10.77476 -10.53901 -9.52213 -8.33627 -6.39290 0.51627 1.12705 1.25135 1.35021 1.38296 1.45988 1.47462 1.59669 1.95267 2.15901 2.31618 2.37521 2.91873 3.00626 3.38430 3.45531 3.74304 3.82499 3.88922 3.98119 4.12139 4.15804 4.25707 4.36800 4.37550 4.58131 4.58773 4.77165 4.85248 4.87019 4.96228 4.99501 5.05561 5.07286 5.34201 5.36751 5.45159 5.57082 5.80524 5.87787 6.21513 6.37517 6.51389 6.62400 6.65714 7.11401 7.16316 7.29406 8.83127 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.001966 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.974722 B =14241.686668 C =15147.191738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.226 3.774 5 C -0.538 4.538 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.236 1.236 12 H -0.277 1.277 13 C 0.500 3.500 14 O -0.573 6.573 15 C 0.062 3.938 16 O -0.349 6.349 17 C 0.459 3.541 18 O -0.532 6.532 19 C -0.106 4.106 20 C -0.103 4.103 21 C 0.105 3.895 22 H 0.176 0.824 23 N -0.707 5.707 24 C 0.704 3.296 25 O -0.586 6.586 26 N -0.674 5.674 27 C 0.534 3.466 28 O -0.492 6.492 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.268 0.732 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.128 0.872 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.453 0.547 44 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.726 -0.989 -23.732 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.326 5.326 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.585 5.585 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.159 1.159 12 H -0.202 1.202 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.015 4.015 16 O -0.265 6.265 17 C 0.304 3.696 18 O -0.421 6.421 19 C -0.143 4.143 20 C -0.142 4.142 21 C -0.003 4.003 22 H 0.193 0.807 23 N -0.373 5.373 24 C 0.403 3.597 25 O -0.463 6.463 26 N -0.345 5.345 27 C 0.321 3.679 28 O -0.363 6.363 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.146 0.854 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.300 0.700 44 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -12.526 -0.900 -23.907 27.005 hybrid contribution 0.713 0.084 0.744 1.034 sum -11.813 -0.817 -23.163 26.014 Atomic orbital electron populations 1.22175 0.93638 1.03882 1.02329 1.21876 0.95911 0.80821 1.04319 1.47975 1.63902 1.15295 1.05393 1.19371 0.94996 0.93218 0.81988 1.21542 0.97030 1.32255 1.06782 0.95282 1.25869 0.96748 0.97195 0.98990 1.70052 1.17466 1.46450 1.24494 0.85712 0.80512 0.79025 0.77689 1.20077 1.15867 1.20202 1.20580 0.78035 0.86703 0.85894 1.90675 1.46776 1.20085 1.87736 1.22766 1.04721 0.91919 0.82113 1.86568 1.79016 1.45508 1.15396 1.24521 0.73303 0.87243 0.84541 1.90684 1.43557 1.21184 1.86715 1.21497 1.07486 0.99082 0.86268 1.21550 1.05201 0.97599 0.89843 1.22224 0.83737 1.01682 0.92649 0.80698 1.45626 1.10345 1.59413 1.21887 1.15961 0.83770 0.78157 0.81786 1.91067 1.17351 1.64194 1.73681 1.44286 1.10701 1.54219 1.25247 1.20961 0.82543 0.78115 0.86316 1.90877 1.27790 1.46529 1.71102 0.92896 0.92090 0.88666 0.88898 0.90196 0.92755 0.95963 0.92264 0.87242 0.85689 0.83357 0.85438 0.90870 0.87915 0.69973 0.71782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.24 71.98 0.74 -2.54 16 2 C 0.09 2.53 5.93 86.38 0.51 3.04 16 3 N -0.59 -22.83 2.46 -826.19 -2.03 -24.86 16 4 C 0.23 10.58 4.23 85.63 0.36 10.94 16 5 C -0.54 -30.88 9.94 25.60 0.25 -30.63 16 6 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 7 C 0.01 0.58 5.47 84.66 0.46 1.05 16 8 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 9 Si 0.95 43.27 27.47 68.60 1.88 45.15 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.24 -9.52 6.53 99.48 0.65 -8.87 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.50 19.49 7.75 87.66 0.68 20.17 16 14 O -0.57 -28.01 16.08 15.78 0.25 -27.76 16 15 C 0.06 1.70 4.50 71.24 0.32 2.02 16 16 O -0.35 -9.36 9.75 -45.06 -0.44 -9.80 16 17 C 0.46 8.98 7.96 71.23 0.57 9.55 16 18 O -0.53 -12.65 15.73 21.97 0.35 -12.31 16 19 C -0.11 -0.84 5.71 29.85 0.17 -0.67 16 20 C -0.10 -0.76 4.28 30.59 0.13 -0.63 16 21 C 0.11 0.44 3.70 44.37 0.16 0.60 16 22 H 0.18 -0.46 8.14 -2.39 -0.02 -0.48 16 23 N -0.71 -4.32 5.94 -459.62 -2.73 -7.05 16 24 C 0.70 9.24 8.99 179.44 1.61 10.86 16 25 O -0.59 -13.12 18.04 -3.85 -0.07 -13.19 16 26 N -0.67 -6.57 5.70 -441.12 -2.52 -9.08 16 27 C 0.53 5.37 8.14 87.94 0.72 6.09 16 28 O -0.49 -8.22 18.02 -2.89 -0.05 -8.27 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.13 7.22 -2.39 -0.02 1.11 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 2.06 6.44 -2.39 -0.02 2.04 16 33 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 34 H 0.05 2.31 7.11 -2.39 -0.02 2.29 16 35 H 0.02 1.12 6.86 -2.39 -0.02 1.10 16 36 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 37 H 0.11 2.75 7.39 -2.39 -0.02 2.73 16 38 H 0.13 2.70 7.18 -2.38 -0.02 2.68 16 39 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.13 0.63 7.36 -2.39 -0.02 0.61 16 41 H 0.07 0.80 8.10 -2.39 -0.02 0.78 16 42 H 0.10 0.88 8.10 -2.39 -0.02 0.86 16 43 H 0.45 1.31 8.37 -92.71 -0.78 0.53 16 44 H 0.44 3.18 8.96 -92.71 -0.83 2.35 16 Total: -1.00 -90.88 380.85 1.05 -89.83 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -0.59 Total: 6.15 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 6.69 Total: 29.83 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -6.97 Total: -99.63 kcal Atomic # 8 Polarization: -71.37 SS G_CDS: 0.04 Total: -71.33 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.15 kcal Total: -90.88 1.05 -89.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323932311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.042 kcal (2) G-P(sol) polarization free energy of solvation -90.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds