Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 O 1.45202 * 109.46885 * 179.72354 * 15 13 3 17 17 C 1.34231 * 116.99541 * 179.97438 * 16 15 13 18 18 O 1.20819 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99478 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46885 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47177 * 179.97438 * 20 19 17 22 22 H 1.09009 * 110.53077 * 57.83095 * 21 20 19 23 23 N 1.47312 * 110.60142 * 295.00337 * 21 20 19 24 24 C 1.34520 * 106.61843 * 241.47174 * 23 21 20 25 25 O 1.21537 * 123.77289 * 179.97438 * 24 23 21 26 26 N 1.33793 * 112.45923 * 359.97438 * 24 23 21 27 27 C 1.34770 * 111.64503 * 359.97438 * 26 24 23 28 28 O 1.21227 * 127.15955 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 30 30 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 32 32 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 33 33 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 34 34 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 35 35 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 36 36 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 38 38 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 39 39 H 1.08993 * 109.47533 * 299.99525 * 19 17 16 40 40 H 1.08998 * 109.47062 * 60.00389 * 19 17 16 41 41 H 1.08998 * 109.46953 * 300.00547 * 20 19 17 42 42 H 1.09004 * 109.47027 * 59.99985 * 20 19 17 43 43 H 0.97006 * 126.68789 * 61.43203 * 23 21 20 44 44 H 0.97002 * 124.17724 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 8 2.3171 2.1922 3.5759 17 6 2.1512 1.7067 4.8162 18 8 1.7518 0.5775 4.9746 19 6 2.4631 2.5702 6.0113 20 6 2.1897 1.7831 7.2945 21 6 2.5070 2.6595 8.5078 22 1 1.9148 3.5744 8.4839 23 7 3.9452 2.9743 8.5581 24 6 4.4126 2.4556 9.7079 25 8 5.5720 2.5362 10.0634 26 7 3.4585 1.8410 10.4165 27 6 2.2637 1.8979 9.7956 28 8 1.2131 1.4356 10.1856 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 3.6759 3.5175 -4.4431 37 1 0.9499 1.0100 2.5343 38 1 2.6281 0.4167 2.5258 39 1 3.5118 2.8657 5.9823 40 1 1.8341 3.4602 5.9905 41 1 1.1409 1.4879 7.3232 42 1 2.8184 0.8928 7.3155 43 1 4.4557 3.4602 7.8916 44 1 3.6081 1.4086 11.2718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323932312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -168.105588 kcal Electronic energy + Delta-G solvation = -28982.791232 eV Core-core repulsion = 24515.447268 eV Total energy + Delta-G solvation = -4467.343964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.89011 -40.73019 -39.14645 -39.04802 -37.12406 -36.54042 -35.37511 -35.14310 -32.92000 -32.82242 -30.24511 -29.59806 -28.38434 -26.56439 -24.42487 -23.27786 -23.12308 -22.60863 -21.95229 -20.84205 -18.91443 -18.74858 -18.02983 -17.57521 -17.08400 -16.99881 -16.76712 -16.49802 -16.35259 -16.03953 -15.86446 -15.37181 -15.28901 -14.73205 -14.57066 -14.26630 -13.95980 -13.55634 -13.44438 -13.21251 -12.98381 -12.75209 -12.40539 -12.17554 -12.11217 -11.75139 -11.68226 -11.54579 -11.28976 -10.99513 -10.92620 -10.91663 -10.85966 -10.72472 -10.67551 -10.58456 -10.19250 -10.10283 -9.69245 -9.07167 -8.49379 -7.81405 -6.10332 -4.15285 1.02308 1.85385 1.97835 2.29061 2.48557 2.57968 3.17714 3.26459 3.34480 3.36175 3.38459 3.71829 4.04584 4.16963 4.26818 4.39838 4.57114 4.71721 4.78729 4.79364 4.95215 5.10240 5.12844 5.24520 5.26192 5.30509 5.46820 5.48998 5.53034 5.67532 5.94213 6.14052 6.19207 6.24544 6.35436 6.39486 6.81424 6.93769 7.33977 7.40968 7.53640 7.60094 7.85671 8.15387 8.23384 8.78569 8.93677 9.49989 10.97866 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.002003 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.716578 B =13977.756500 C =15156.861984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.520 6.520 15 C 0.050 3.950 16 O -0.328 6.328 17 C 0.461 3.539 18 O -0.510 6.510 19 C -0.113 4.113 20 C -0.110 4.110 21 C 0.093 3.907 22 H 0.137 0.863 23 N -0.722 5.722 24 C 0.705 3.295 25 O -0.541 6.541 26 N -0.680 5.680 27 C 0.531 3.469 28 O -0.461 6.461 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.444 0.556 44 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -3.371 23.778 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.243 6.243 17 C 0.304 3.696 18 O -0.399 6.399 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.016 4.016 22 H 0.154 0.846 23 N -0.388 5.388 24 C 0.404 3.596 25 O -0.414 6.414 26 N -0.351 5.351 27 C 0.316 3.684 28 O -0.329 6.329 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.289 0.711 44 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -5.263 -3.161 23.921 24.696 hybrid contribution 1.171 -0.370 -0.417 1.297 sum -4.092 -3.531 23.504 24.118 Atomic orbital electron populations 1.22231 0.96486 1.01732 1.02419 1.21516 0.93781 0.83926 1.03053 1.48220 1.63723 1.13399 1.07157 1.19344 0.96525 0.93710 0.77540 1.21452 0.96818 1.32034 1.06377 0.92355 1.24941 0.97953 0.94851 0.96362 1.69936 1.35651 1.33323 1.14347 0.86428 0.84483 0.78097 0.78325 1.19796 1.20935 1.20828 1.19705 0.79760 0.87167 0.84301 1.90718 1.44555 1.17518 1.86743 1.22993 1.02743 0.92632 0.84378 1.86555 1.78320 1.45024 1.14366 1.23527 0.74404 0.86846 0.84823 1.90689 1.42440 1.19988 1.86757 1.21298 1.05668 0.99119 0.88939 1.21644 1.05565 0.97960 0.89690 1.22160 0.83962 1.00832 0.94676 0.84570 1.45647 1.09870 1.60419 1.22896 1.15851 0.84333 0.78284 0.81175 1.91089 1.15305 1.62433 1.72611 1.44330 1.10880 1.54767 1.25165 1.20689 0.83173 0.78716 0.85809 1.90882 1.26889 1.45224 1.69912 0.91756 0.91867 0.93148 0.89380 0.91767 0.94604 0.93686 0.92691 0.88658 0.88627 0.87268 0.86544 0.87752 0.89384 0.71061 0.72369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.52 5.94 -4.04 -0.02 1.50 16 3 N -0.59 -11.92 2.46 -175.06 -0.43 -12.35 16 4 C 0.25 6.22 5.16 -5.20 -0.03 6.20 16 5 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 9 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.51 10.19 7.75 -10.98 -0.09 10.10 16 14 O -0.52 -12.81 16.08 -14.11 -0.23 -13.04 16 15 C 0.05 0.74 4.50 36.01 0.16 0.91 16 16 O -0.33 -4.74 9.76 -45.91 -0.45 -5.19 16 17 C 0.46 5.11 7.96 36.01 0.29 5.39 16 18 O -0.51 -6.67 15.73 -18.74 -0.29 -6.97 16 19 C -0.11 -0.64 5.71 -27.88 -0.16 -0.80 16 20 C -0.11 -0.56 4.28 -26.73 -0.11 -0.67 16 21 C 0.09 0.34 3.70 -68.21 -0.25 0.09 16 22 H 0.14 0.16 8.14 -51.92 -0.42 -0.27 16 23 N -0.72 -3.05 5.94 -59.19 -0.35 -3.41 16 24 C 0.70 5.00 8.99 -88.02 -0.79 4.20 16 25 O -0.54 -6.07 18.04 5.33 0.10 -5.98 16 26 N -0.68 -3.66 5.70 -15.79 -0.09 -3.75 16 27 C 0.53 3.14 8.15 -10.55 -0.09 3.05 16 28 O -0.46 -4.15 18.02 5.60 0.10 -4.05 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.60 7.24 -51.93 -0.38 0.23 16 32 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.10 1.23 7.21 -51.93 -0.37 0.85 16 38 H 0.10 1.30 7.39 -51.93 -0.38 0.91 16 39 H 0.11 0.46 7.36 -51.93 -0.38 0.08 16 40 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 42 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.44 1.22 8.37 -40.82 -0.34 0.88 16 44 H 0.43 1.66 8.96 -40.82 -0.37 1.29 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -38.42 384.50 -7.12 -45.55 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.86 Total: -2.74 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: -1.13 Total: 14.94 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.14 Total: -44.75 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.77 Total: -35.22 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.42 -7.12 -45.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323932312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.558 kcal (2) G-P(sol) polarization free energy of solvation -38.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds