Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 O 1.45202 * 109.46885 * 179.72354 * 15 13 3 17 17 C 1.34231 * 116.99541 * 179.97438 * 16 15 13 18 18 O 1.20819 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99478 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46885 * 179.97438 * 19 17 16 21 21 C 1.53000 * 109.47177 * 179.97438 * 20 19 17 22 22 H 1.09009 * 110.53077 * 57.83095 * 21 20 19 23 23 N 1.47312 * 110.60142 * 295.00337 * 21 20 19 24 24 C 1.34520 * 106.61843 * 241.47174 * 23 21 20 25 25 O 1.21537 * 123.77289 * 179.97438 * 24 23 21 26 26 N 1.33793 * 112.45923 * 359.97438 * 24 23 21 27 27 C 1.34770 * 111.64503 * 359.97438 * 26 24 23 28 28 O 1.21227 * 127.15955 * 180.02562 * 27 26 24 29 29 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 30 30 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 32 32 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 33 33 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 34 34 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 35 35 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 36 36 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 37 37 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 38 38 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 39 39 H 1.08993 * 109.47533 * 299.99525 * 19 17 16 40 40 H 1.08998 * 109.47062 * 60.00389 * 19 17 16 41 41 H 1.08998 * 109.46953 * 300.00547 * 20 19 17 42 42 H 1.09004 * 109.47027 * 59.99985 * 20 19 17 43 43 H 0.97006 * 126.68789 * 61.43203 * 23 21 20 44 44 H 0.97002 * 124.17724 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 8 2.3171 2.1922 3.5759 17 6 2.1512 1.7067 4.8162 18 8 1.7518 0.5775 4.9746 19 6 2.4631 2.5702 6.0113 20 6 2.1897 1.7831 7.2945 21 6 2.5070 2.6595 8.5078 22 1 1.9148 3.5744 8.4839 23 7 3.9452 2.9743 8.5581 24 6 4.4126 2.4556 9.7079 25 8 5.5720 2.5362 10.0634 26 7 3.4585 1.8410 10.4165 27 6 2.2637 1.8979 9.7956 28 8 1.2131 1.4356 10.1856 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0285 35 1 2.0956 3.1410 -1.1385 36 1 3.6759 3.5175 -4.4431 37 1 0.9499 1.0100 2.5343 38 1 2.6281 0.4167 2.5258 39 1 3.5118 2.8657 5.9823 40 1 1.8341 3.4602 5.9905 41 1 1.1409 1.4879 7.3232 42 1 2.8184 0.8928 7.3155 43 1 4.4557 3.4602 7.8916 44 1 3.6081 1.4086 11.2718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323932312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -198.010813 kcal Electronic energy + Delta-G solvation = -28984.088020 eV Core-core repulsion = 24515.447268 eV Total energy + Delta-G solvation = -4468.640752 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.151 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.38073 -41.73468 -40.55026 -39.72842 -37.88179 -37.42326 -36.95560 -35.67528 -34.93396 -33.35287 -31.74687 -30.77259 -29.23358 -28.16665 -25.25450 -24.67653 -24.09697 -23.68593 -22.44066 -21.61760 -20.24857 -19.41785 -18.96189 -18.63431 -18.12648 -18.03890 -17.75507 -17.58872 -17.38871 -16.98404 -16.70934 -16.53610 -16.26469 -16.02644 -15.50645 -15.29943 -14.92363 -14.77509 -14.52425 -14.23255 -13.99365 -13.76370 -13.65840 -13.54185 -13.27670 -13.06929 -13.00725 -12.69074 -12.50824 -12.23897 -12.22155 -12.09781 -12.03051 -11.76405 -11.68251 -11.67381 -11.49277 -11.35712 -10.71122 -10.64951 -10.53617 -9.53393 -8.23251 -6.37478 0.51859 1.13741 1.27750 1.37356 1.39587 1.47399 1.51488 1.64175 1.95465 2.16111 2.33813 2.47021 2.92179 3.06975 3.41216 3.47297 3.74870 3.82855 3.89841 3.99814 4.13245 4.17216 4.25919 4.37733 4.38680 4.58731 4.59451 4.85681 4.89595 4.95372 5.03651 5.05899 5.07690 5.20046 5.35911 5.37418 5.54911 5.80221 5.80836 5.87930 6.04423 6.37735 6.56552 6.68758 6.72558 7.11693 7.22496 7.37458 8.84284 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.002003 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.716578 B =13977.756500 C =15156.861984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.498 3.502 14 O -0.577 6.577 15 C 0.063 3.937 16 O -0.349 6.349 17 C 0.459 3.541 18 O -0.532 6.532 19 C -0.106 4.106 20 C -0.103 4.103 21 C 0.105 3.895 22 H 0.175 0.825 23 N -0.706 5.706 24 C 0.704 3.296 25 O -0.586 6.586 26 N -0.674 5.674 27 C 0.534 3.466 28 O -0.493 6.493 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.028 0.972 35 H 0.001 0.999 36 H 0.267 0.733 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.147 0.853 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.453 0.547 44 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.368 -4.248 24.908 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.329 5.329 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.195 1.195 12 H -0.208 1.208 13 C 0.285 3.715 14 O -0.457 6.457 15 C -0.014 4.014 16 O -0.265 6.265 17 C 0.304 3.696 18 O -0.421 6.421 19 C -0.143 4.143 20 C -0.142 4.142 21 C -0.003 4.003 22 H 0.192 0.808 23 N -0.372 5.372 24 C 0.404 3.596 25 O -0.463 6.463 26 N -0.345 5.345 27 C 0.321 3.679 28 O -0.363 6.363 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.046 0.954 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.120 0.880 42 H 0.092 0.908 43 H 0.300 0.700 44 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -5.302 -4.084 25.054 25.933 hybrid contribution 1.110 -0.122 -0.736 1.337 sum -4.192 -4.206 24.318 25.033 Atomic orbital electron populations 1.22172 0.94309 1.03737 1.01888 1.21852 0.95559 0.81048 1.04319 1.48215 1.63639 1.15206 1.05794 1.18786 0.95519 0.91720 0.79833 1.21722 0.97813 1.31999 1.06566 0.92774 1.25844 1.02327 0.94489 0.96464 1.70048 1.37670 1.34131 1.14836 0.85372 0.79082 0.78004 0.78371 1.19134 1.19526 1.20769 1.20603 0.78279 0.86687 0.85886 1.90677 1.47086 1.20130 1.87769 1.22768 1.04579 0.92000 0.82065 1.86573 1.78962 1.45564 1.15401 1.24515 0.73348 0.87207 0.84546 1.90680 1.43557 1.21180 1.86720 1.21495 1.07482 0.99076 0.86288 1.21547 1.05167 0.97630 0.89818 1.22220 0.83735 1.01714 0.92662 0.80787 1.45621 1.10173 1.59393 1.22047 1.15956 0.83787 0.78149 0.81756 1.91065 1.17189 1.64220 1.73797 1.44287 1.10586 1.54236 1.25347 1.20956 0.82551 0.78097 0.86331 1.90876 1.27910 1.46644 1.70878 0.93742 0.88514 0.92257 0.90182 0.88414 0.95363 0.98116 0.92369 0.86111 0.86802 0.85321 0.83518 0.87994 0.90766 0.69957 0.71780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.09 2.70 5.94 86.38 0.51 3.21 16 3 N -0.60 -24.25 2.46 -826.15 -2.03 -26.28 16 4 C 0.26 13.74 5.16 85.63 0.44 14.18 16 5 C -0.54 -30.57 9.39 25.60 0.24 -30.33 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.45 5.46 84.66 0.46 0.91 16 8 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 9 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.50 20.13 7.75 87.66 0.68 20.81 16 14 O -0.58 -29.38 16.08 15.76 0.25 -29.13 16 15 C 0.06 1.76 4.50 71.24 0.32 2.08 16 16 O -0.35 -9.50 9.76 -45.07 -0.44 -9.94 16 17 C 0.46 9.05 7.96 71.24 0.57 9.61 16 18 O -0.53 -12.68 15.73 21.98 0.35 -12.33 16 19 C -0.11 -0.86 5.71 29.85 0.17 -0.69 16 20 C -0.10 -0.76 4.28 30.60 0.13 -0.63 16 21 C 0.10 0.44 3.70 44.37 0.16 0.60 16 22 H 0.18 -0.42 8.14 -2.38 -0.02 -0.44 16 23 N -0.71 -4.17 5.94 -459.61 -2.73 -6.90 16 24 C 0.70 9.06 8.99 179.44 1.61 10.68 16 25 O -0.59 -12.90 18.04 -3.83 -0.07 -12.97 16 26 N -0.67 -6.46 5.70 -441.13 -2.52 -8.98 16 27 C 0.53 5.36 8.15 87.94 0.72 6.08 16 28 O -0.49 -8.26 18.02 -2.87 -0.05 -8.31 16 29 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.27 7.24 -2.39 -0.02 1.25 16 32 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 33 H 0.10 2.16 6.43 -2.39 -0.02 2.14 16 34 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 35 H 0.00 0.04 7.42 -2.38 -0.02 0.03 16 36 H 0.27 14.86 8.31 -92.72 -0.77 14.09 16 37 H 0.12 2.77 7.21 -2.38 -0.02 2.75 16 38 H 0.11 2.79 7.39 -2.39 -0.02 2.77 16 39 H 0.13 0.61 7.36 -2.39 -0.02 0.59 16 40 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.10 0.89 8.10 -2.39 -0.02 0.87 16 42 H 0.07 0.79 8.10 -2.38 -0.02 0.77 16 43 H 0.45 1.18 8.37 -92.70 -0.78 0.40 16 44 H 0.44 3.10 8.96 -92.71 -0.83 2.27 16 Total: -1.00 -87.90 384.50 1.29 -86.60 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -0.54 Total: 3.35 kcal Atomic # 6 Polarization: 26.74 SS G_CDS: 6.76 Total: 33.50 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -6.99 Total: -96.98 kcal Atomic # 8 Polarization: -72.71 SS G_CDS: 0.04 Total: -72.68 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -87.90 1.29 -86.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323932312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.408 kcal (2) G-P(sol) polarization free energy of solvation -87.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds